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Employment (3)

ETH Zurich: Zurich, CH

2017-08-01 to present | Senior Bioinformatician (D-BIOL)
Employment
Source: Self-asserted source
Hans-Joachim Ruscheweyh

ETH Zurich: Zurich, CH

2014-08-01 to 2017-07-31 | PostDoc (D-BSSE)
Employment
Source: Self-asserted source
Hans-Joachim Ruscheweyh

ETH Zurich: Zurich, CH

2014-08-01 to 2017-07-31 | Scientific Software Developer (ID-SIS)
Employment
Source: Self-asserted source
Hans-Joachim Ruscheweyh

Education and qualifications (1)

Eberhard Karls Universitat Tubingen Zentrum fur Bioinformatik Tubingen: Tuebingen, Baden-Württemberg, DE

2010-09-01 to 2014-07-31 | PhD Student (ZBIT)
Qualification
Source: Self-asserted source
Hans-Joachim Ruscheweyh

Works (45)

Assessing environmental gradients in relation to dark CO 2 fixation in estuarine wetland microbiomes

Applied and Environmental Microbiology
2025-01-31 | Journal article
DOI: 10.1128/aem.02177-24
Contributors: Luise Grüterich; Jason Nicholas Woodhouse; Peter Mueller; Amos Tiemann; Hans-Joachim Ruscheweyh; Shinichi Sunagawa; Hans-Peter Grossart; Wolfgang R. Streit; Jennifer B. Glass
Source: check_circle
Crossref

Egoviruses: distant relatives of poxviruses abundant in the gut microbiomes of humans and animals worldwide

2024-03-23 | Preprint
DOI: 10.1101/2024.03.23.586382
Contributors: Morgan Gaïa; Hans-Joachim Ruscheweyh; A. Murat Eren; Eugene V. Koonin; Shinichi Sunagawa; Mart Krupovic; Tom O. Delmont
Source: check_circle
Crossref

Niche availability and competitive loss by facilitation control proliferation of bacterial strains intended for soil microbiome interventions

Nature Communications
2024-03-22 | Journal article
DOI: 10.1038/s41467-024-46933-1
Contributors: Senka Čaušević; Manupriyam Dubey; Marian Morales; Guillem Salazar; Vladimir Sentchilo; Nicolas Carraro; Hans-Joachim Ruscheweyh; Shinichi Sunagawa; Jan Roelof van der Meer
Source: check_circle
Crossref

Functional and evolutionary significance of unknown genes from uncultivated taxa

Nature
2024-02-08 | Journal article
DOI: 10.1038/s41586-023-06955-z
Contributors: Álvaro Rodríguez del Río; Joaquín Giner-Lamia; Carlos P. Cantalapiedra; Jorge Botas; Ziqi Deng; Ana Hernández-Plaza; Martí Munar-Palmer; Saray Santamaría-Hernando; José J. Rodríguez-Herva; Hans-Joachim Ruscheweyh et al.
Source: check_circle
Crossref

Environmental controls of dark CO2 fixation in wetland microbiomes

2024-01-18 | Preprint
DOI: 10.1101/2024.01.18.576062
Contributors: Luise Grüterich; Jason Nicholas Woodhouse; Peter Mueller; Amos Tiemann; Hans-Jo-achim Ruscheweyh; Shinichi Sunagawa; Hans-Peter Grossart; Wolfgang R. Streit
Source: check_circle
Crossref

SPIRE: a Searchable, Planetary-scale mIcrobiome REsource

Nucleic Acids Research
2024-01-05 | Journal article
DOI: 10.1093/nar/gkad943
Contributors: Thomas S B Schmidt; Anthony Fullam; Pamela Ferretti; Askarbek Orakov; Oleksandr M Maistrenko; Hans-Joachim Ruscheweyh; Ivica Letunic; Yiqian Duan; Thea Van Rossum; Shinichi Sunagawa et al.
Source: check_circle
Crossref

mBARq: a versatile and user-friendly framework for the analysis of DNA barcodes from transposon insertion libraries, knockout mutants and isogenic strain populations

2023-11-28 | Preprint
DOI: 10.1101/2023.11.27.568830
Contributors: Anna Sintsova; Hans-Joachim Ruscheweyh; Christopher M. Field; Lilith Feer; Bidong D. Nguyen; Benjamin Daniel; Wolf-Dietrich Hardt; Julia A. Vorholt; Shinichi Sunagawa
Source: check_circle
Crossref

Phenology and ecological role of Aerobic Anoxygenic Phototrophs in fresh waters

2023-11-17 | Preprint
DOI: 10.1101/2023.11.17.567504
Contributors: Cristian Villena-Alemany; Izabela Mujakić; Livia K. Fecskeová; Jason Woodhouse; Adrià Auladell; Jason Dean; Martina Hanusova; Magdalena Socha; Carlota R. Gazulla; Hans-Joachim Ruscheweyh et al.
Source: check_circle
Crossref

Diversity of the Pacific Ocean coral reef microbiome

Nature Communications
2023-06-01 | Journal article
DOI: 10.1038/s41467-023-38500-x
Contributors: Pierre E. Galand; Hans-Joachim Ruscheweyh; Guillem Salazar; Corentin Hochart; Nicolas Henry; Benjamin C. C. Hume; Pedro H. Oliveira; Aude Perdereau; Karine Labadie; Caroline Belser et al.
Source: check_circle
Crossref

Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean

Nature Communications
2023-06-01 | Journal article
DOI: 10.1038/s41467-023-38502-9
Contributors: Corentin Hochart; Lucas Paoli; Hans-Joachim Ruscheweyh; Guillem Salazar; Emilie Boissin; Sarah Romac; Julie Poulain; Guillaume Bourdin; Guillaume Iwankow; Clémentine Moulin et al.
Source: check_circle
Crossref

Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes

Communications Biology
2023-06-01 | Journal article
DOI: 10.1038/s42003-023-04917-9
Contributors: Alex J. Veglia; Kalia S. I. Bistolas; Christian R. Voolstra; Benjamin C. C. Hume; Hans-Joachim Ruscheweyh; Serge Planes; Denis Allemand; Emilie Boissin; Patrick Wincker; Julie Poulain et al.
Source: check_circle
Crossref

Biosynthetic potential of the global ocean microbiome

Nature
2022-07-07 | Journal article
DOI: 10.1038/s41586-022-04862-3
Contributors: Lucas Paoli; Hans-Joachim Ruscheweyh; Clarissa C. Forneris; Florian Hubrich; Satria Kautsar; Agneya Bhushan; Alessandro Lotti; Quentin Clayssen; Guillem Salazar; Alessio Milanese et al.
Source: check_circle
Crossref

Terrestrial and marine influence on atmospheric bacterial diversity over the north Atlantic and Pacific Oceans

Communications Earth & Environment
2022-05-20 | Journal article
DOI: 10.1038/s43247-022-00441-6
Contributors: Naama Lang-Yona; J. Michel Flores; Rotem Haviv; Adriana Alberti; Julie Poulain; Caroline Belser; Miri Trainic; Daniella Gat; Hans-Joachim Ruscheweyh; Patrick Wincker et al.
Source: check_circle
Crossref

Methylation of CpG 5962 in L1 of the human papillomavirus 16 genome as a potential predictive marker for viral persistence: a prospective large cohort study using cervical swab samples

Cancer medicine
2020 | Journal article
Source: Self-asserted source
Hans-Joachim Ruscheweyh

Tara Pacific 16S rRNA data analysis release

2020-10-08 | Dataset
DOI: 10.5281/ZENODO.4073268
Source: Self-asserted source
Hans-Joachim Ruscheweyh

Tara Pacific samples provenance and environmental context - version 1

2020-10-06 | Dataset
DOI: 10.5281/ZENODO.4068292
Source: Self-asserted source
Hans-Joachim Ruscheweyh

Tara Pacific ITS2 Symbiodiniaceae data release version 1

2020-10-01 | Dataset
DOI: 10.5281/ZENODO.4061796
Source: Self-asserted source
Hans-Joachim Ruscheweyh

Methylation of CpG 5962 in L1 of the human papillomavirus 16 genome as a potential predictive marker for viral persistence: A prospective large cohort study using cervical swab samples

Cancer Medicine
2020-02 | Journal article
DOI: 10.1002/cam4.2771
Contributors: Jasmin Fertey; Jörg Hagmann; Hans‐Joachim Ruscheweyh; Christian Munk; Susanne Kjaer; Daniel Huson; Juliane Haedicke‐Jarboui; Frank Stubenrauch; Thomas Iftner
Source: check_circle
Crossref

Bioinformatics for precision oncology

Briefings in bioinformatics
2019 | Journal article
Source: Self-asserted source
Hans-Joachim Ruscheweyh

Gene expression changes and community turnover differentially shape the global ocean metatranscriptome

Cell
2019 | Journal article
Source: Self-asserted source
Hans-Joachim Ruscheweyh

Gut microbial beta-glucuronidase and glycerol/diol dehydratase activity contribute to dietary heterocyclic amine biotransformation

BMC microbiology
2019 | Journal article
Source: Self-asserted source
Hans-Joachim Ruscheweyh

Microbial abundance, activity and population genomic profiling with mOTUs2

Nature communications
2019 | Journal article
Source: Self-asserted source
Hans-Joachim Ruscheweyh

Mucispirillum schaedleri antagonizes salmonella virulence to protect mice against colitis

Cell host & microbe
2019 | Journal article
Source: Self-asserted source
Hans-Joachim Ruscheweyh

NGS-pipe: a flexible, easily extendable and highly configurable framework for NGS analysis

Bioinformatics
2018 | Journal article
Source: Self-asserted source
Hans-Joachim Ruscheweyh

Bioinformatics for precision oncology

Briefings in bioinformatics
2017 | Journal article
Source: Self-asserted source
Hans-Joachim Ruscheweyh

Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium

Nature microbiology
2017 | Journal article
Source: Self-asserted source
Hans-Joachim Ruscheweyh

Intestinal dysbiosis, barrier dysfunction, and bacterial translocation account for CKD--related systemic inflammation

Journal of the American society of nephrology
2017 | Journal article
Source: Self-asserted source
Hans-Joachim Ruscheweyh

Trophic interactions of infant bifidobacteria and Eubacterium hallii during L-fucose and fucosyllactose degradation

Frontiers in Microbiology
2017 | Journal article
Source: Self-asserted source
Hans-Joachim Ruscheweyh

Accurate and predictive antibody repertoire profiling by molecular amplification fingerprinting

Science advances
2016 | Journal article
Source: Self-asserted source
Hans-Joachim Ruscheweyh

Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium

Nature microbiology
2016 | Journal article
Source: Self-asserted source
Hans-Joachim Ruscheweyh

Intestinal dysbiosis, barrier dysfunction, and bacterial translocation account for CKD--related systemic inflammation

Journal of the American Society of Nephrology
2016 | Journal article
Source: Self-asserted source
Hans-Joachim Ruscheweyh

MEGAN community edition-interactive exploration and analysis of large-scale microbiome sequencing data

PLoS computational biology
2016 | Journal article
Source: Self-asserted source
Hans-Joachim Ruscheweyh

MEGAN community edition-interactive exploration and analysis of large-scale microbiome sequencing data

PLoS computational biology
2016 | Journal article
Source: Self-asserted source
Hans-Joachim Ruscheweyh

The common gut microbe Eubacterium hallii also contributes to intestinal propionate formation

Frontiers in microbiology
2016 | Journal article
Source: Self-asserted source
Hans-Joachim Ruscheweyh

User Manual for MeganServer1. 0

2016 | Journal article
Source: Self-asserted source
Hans-Joachim Ruscheweyh

Accurate and predictive antibody repertoire profiling by molecular amplification fingerprinting

Science Advances
2016-03-04 | Journal article
DOI: 10.1126/sciadv.1501371
Contributors: Tarik A. Khan; Simon Friedensohn; Arthur R. Gorter de Vries; Jakub Straszewski; Hans-Joachim Ruscheweyh; Sai T. Reddy
Source: check_circle
Crossref

An Efficient Pipeline for Microbiome Analysis

2015 | Journal article
Source: Self-asserted source
Hans-Joachim Ruscheweyh

Endotoxicity of lipopolysaccharide as a determinant of T-cell- mediated colitis induction in mice

Gastroenterology
2014 | Journal article
Source: Self-asserted source
Hans-Joachim Ruscheweyh

Improved metagenome analysis using MEGAN5

InJoint 21st annual international conference on intelligent systems for molecular biology (ISMB) and 12th European conference on computational biology (ECCB)
2013 | Conference paper
Source: Self-asserted source
Hans-Joachim Ruscheweyh

Influence of the gut microbiota on IBD development

INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY
2013 | Conference paper
Source: Self-asserted source
Hans-Joachim Ruscheweyh

The dichotomic role of LPS: induction or prevention of intestinal inflammation

INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY
2013 | Conference paper
Source: Self-asserted source
Hans-Joachim Ruscheweyh

Impact of the intestinal microbiota on homeostasis

INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY
2012 | Conference paper
Source: Self-asserted source
Hans-Joachim Ruscheweyh

Integrative analysis of environmental sequences using MEGAN4

Genome research
2011 | Journal article
Source: Self-asserted source
Hans-Joachim Ruscheweyh

Datenbankgestützte Analyse von Metagenomikdaten

Journal article
Source: Self-asserted source
Hans-Joachim Ruscheweyh

Methods for large-scale Microbiome Analysis using MEGAN

Journal article
Source: Self-asserted source
Hans-Joachim Ruscheweyh
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