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DDBJ

Keywords

database, bioinformatics

Countries

Japan

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Employment (1)

National Institute of Genetics: Mishima, Shizuoka, JP

2008-01-01 to present | Coordinator (Bioinformation and DDBJ Center)
Employment
Source: Self-asserted source
Yuichi Kodama

Works (23)

DDBJ update in 2024: the DDBJ Group Cloud service for sharing pre-publication data

Nucleic Acids Research
2025-01-06 | Journal article
DOI: 10.1093/nar/gkae882
Contributors: Yuichi Kodama; Takeshi Ara; Asami Fukuda; Toshiaki Tokimatsu; Jun Mashima; Takehide Kosuge; Yasuhiro Tanizawa; Tomoya Tanjo; Osamu Ogasawara; Takatomo Fujisawa et al.
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Crossref

Sapporo: A workflow execution service that encourages the reuse of workflows in various languages in bioinformatics

F1000Research
2024-06-24 | Journal article
DOI: 10.12688/f1000research.122924.2
Contributors: Hirotaka Suetake; Tomoya Tanjo; Manabu Ishii; Bruno P. Kinoshita; Takeshi Fujino; Tsuyoshi Hachiya; Yuichi Kodama; Takatomo Fujisawa; Osamu Ogasawara; Atsushi Shimizu et al.
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Crossref
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DDBJ update in 2023: the MetaboBank for metabolomics data and associated metadata

Nucleic Acids Research
2024-01-05 | Journal article
DOI: 10.1093/nar/gkad1046
Contributors: Takeshi Ara; Yuichi Kodama; Toshiaki Tokimatsu; Asami Fukuda; Takehide Kosuge; Jun Mashima; Yasuhiro Tanizawa; Tomoya Tanjo; Osamu Ogasawara; Takatomo Fujisawa et al.
Source: check_circle
Crossref

DNA Data Bank of Japan (DDBJ) update report 2022

Nucleic Acids Research
2023-01-06 | Journal article
DOI: 10.1093/nar/gkac1083
Contributors: Yasuhiro Tanizawa; Takatomo Fujisawa; Yuichi Kodama; Takehide Kosuge; Jun Mashima; Tomoya Tanjo; Yasukazu Nakamura
Source: check_circle
Crossref

Sapporo: A workflow execution service that encourages the reuse of workflows in various languages in bioinformatics

F1000Research
2022-08-04 | Journal article
DOI: 10.12688/f1000research.122924.1
Contributors: Hirotaka Suetake; Tomoya Tanjo; Manabu Ishii; Bruno P. Kinoshita; Takeshi Fujino; Tsuyoshi Hachiya; Yuichi Kodama; Takatomo Fujisawa; Osamu Ogasawara; Atsushi Shimizu et al.
Source: check_circle
Crossref

DNA Data Bank of Japan (DDBJ) update report 2021

Nucleic Acids Research
2022-01-07 | Journal article
DOI: 10.1093/nar/gkab995
Contributors: Toshihisa Okido; Yuichi Kodama; Jun Mashima; Takehide Kosuge; Takatomo Fujisawa; Osamu Ogasawara
Source: check_circle
Crossref

DDBJ update: streamlining submission and access of human data

Nucleic Acids Research
2021-01-08 | Journal article
DOI: 10.1093/nar/gkaa982
Contributors: Asami Fukuda; Yuichi Kodama; Jun Mashima; Takatomo Fujisawa; Osamu Ogasawara
Source: check_circle
Crossref

DDBJ Database updates and computational infrastructure enhancement

Nucleic Acids Research
2019-11-14 | Journal article
DOI: 10.1093/nar/gkz982
Contributors: Osamu Ogasawara; Yuichi Kodama; Jun Mashima; Takehide Kosuge; Takatomo Fujisawa
Source: check_circle
Crossref

DDBJ update: the Genomic Expression Archive (GEA) for functional genomics data

Nucleic Acids Research
2019-01-08 | Journal article
DOI: 10.1093/nar/gky1002
Contributors: Yuichi Kodama; Jun Mashima; Takehide Kosuge; Osamu Ogasawara
Source: check_circle
Crossref

DNA Data Bank of Japan: 30th anniversary

Nucleic Acids Research
2018-01-04 | Journal article
DOI: 10.1093/nar/gkx926
Contributors: Yuichi Kodama; Jun Mashima; Takehide Kosuge; Eli Kaminuma; Osamu Ogasawara; Kousaku Okubo; Yasukazu Nakamura; Toshihisa Takagi
Source: check_circle
Crossref

DNA Data Bank of Japan

Nucleic Acids Research
2017-01-04 | Journal article
DOI: 10.1093/nar/gkw1001
Contributors: Jun Mashima; Yuichi Kodama; Takatomo Fujisawa; Toshiaki Katayama; Yoshihiro Okuda; Eli Kaminuma; Osamu Ogasawara; Kousaku Okubo; Yasukazu Nakamura; Toshihisa Takagi
Source: check_circle
Crossref

DNA data bank of Japan (DDBJ) progress report

Nucleic Acids Research
2016-01-04 | Journal article
DOI: 10.1093/nar/gkv1105
Source: check_circle
Crossref

The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data

Nucleic Acids Research
2015-01-28 | Journal article
DOI: 10.1093/nar/gku1120
Contributors: Yuichi Kodama; Jun Mashima; Takehide Kosuge; Toshiaki Katayama; Takatomo Fujisawa; Eli Kaminuma; Osamu Ogasawara; Kousaku Okubo; Toshihisa Takagi; Yasukazu Nakamura
Source: check_circle
Crossref

Biological databases at DNA Data Bank of Japan in the era of next-generation sequencing technologies.

Journal article
PMID:

20865494
Source: Self-asserted source
Yuichi Kodama

DDBJ launches a new archive database with analytical tools for next-generation sequence data.

Journal article
PMID:

19850725
Source: Self-asserted source
Yuichi Kodama

DDBJ new system and service refactoring.

Journal article
PMID:

23180790
Source: Self-asserted source
Yuichi Kodama

DDBJ progress report.

Journal article
PMID:

21062814
Source: Self-asserted source
Yuichi Kodama

DDBJ progress report: a new submission system for leading to a correct annotation.

Journal article
PMID:

24194602
Source: Self-asserted source
Yuichi Kodama

DDBJ read annotation pipeline: a cloud computing-based pipeline for high-throughput analysis of next-generation sequencing data.

Journal article
PMID:

23657089
Source: Self-asserted source
Yuichi Kodama

Mapping and characterization of DNase I hypersensitive sites in Arabidopsis chromatin.

Journal article
PMID:

17283013
Source: Self-asserted source
Yuichi Kodama

The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments.

Journal article
PMID:

22110025
Source: Self-asserted source
Yuichi Kodama

The Sequence Read Archive: explosive growth of sequencing data

Journal article
PMID:

22009675
Source: Self-asserted source
Yuichi Kodama

Toward richer metadata for microbial sequences: replacing strain-level NCBI taxonomy taxids with BioProject, BioSample and Assembly records.

Journal article
PMID:

25197497
Source: Self-asserted source
Yuichi Kodama
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