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Employment (1)

Georgia Institute of Technology: Atlanta, GA, US

Assistant Professor (School of Computational Science and Engineering)
Employment
Source: Self-asserted source
Yunan Luo

Education and qualifications (1)

University of Illinois at Urbana-Champaign: Urbana, IL, US

Ph.D. (Department of Computer Science)
Education
Source: Self-asserted source
Yunan Luo

Works (35)

Rewiring protein sequence and structure generative models to enhance protein stability prediction

2025-02-18 | Preprint
Contributors: Ziang Li; Yunan Luo
Source: check_circle
Crossref

Learning maximally spanning representations improves protein function annotation

2025-02-17 | Preprint
Contributors: Jiaqi Luo; Yunan Luo
Source: check_circle
Crossref

BioDolphin as a comprehensive database of lipid–protein binding interactions

Communications Chemistry
2024-12-04 | Journal article
Contributors: Li-Yen Yang; Kaike Ping; Yunan Luo; Andrew C. McShan
Source: check_circle
Crossref

Machine learning-guided co-optimization of fitness and diversity facilitates combinatorial library design in enzyme engineering

Nature Communications
2024-07-29 | Journal article
Contributors: Kerr Ding; Michael Chin; Yunlong Zhao; Wei Huang; Binh Khanh Mai; Huanan Wang; Peng Liu; Yang Yang; Yunan Luo
Source: check_circle
Crossref

Leveraging conformal prediction to annotate enzyme function space with limited false positives

PLOS Computational Biology
2024-05-29 | Journal article
Contributors: Kerr Ding; Cameron Mura; Jiaqi Luo; Yunan Luo
Source: check_circle
Crossref

Contrastive Fitness Learning: Reprogramming Protein Language Models for Low-N Learning of Protein Fitness Landscape

Research in Computational Molecular Biology (RECOMB) 2024
2024-05-17 | Conference paper
Part of ISBN: 9781071639887
Part of ISBN: 9781071639894
Part of ISSN: 0302-9743
Part of ISSN: 1611-3349
Contributors: Junming Zhao; Chao Zhang; Yunan Luo
Source: Self-asserted source
Yunan Luo

Contrastive Fitness Learning: Reprogramming Protein Language Models for Low-NLearning of Protein Fitness Landscape

2024-02-12 | Preprint
Contributors: Junming Zhao; Chao Zhang; Yunan Luo
Source: check_circle
Crossref

Calibrated geometric deep learning improves kinase–drug binding predictions

Nature Machine Intelligence
2023-11-06 | Journal article
Contributors: Yunan Luo; Yang Liu; Jian Peng
Source: check_circle
Crossref

Supervised biological network alignment with graph neural networks

Bioinformatics
2023-06-30 | Journal article
Part of ISSN: 1367-4803
Part of ISSN: 1367-4811
Contributors: Kerr Ding; Sheng Wang; Yunan Luo
Source: Self-asserted source
Yunan Luo

Metabolic activity organizes olfactory representations

eLife
2023-05-02 | Journal article
Contributors: Wesley W Qian; Jennifer N Wei; Benjamin Sanchez-Lengeling; Brian K Lee; Yunan Luo; Marnix Vlot; Koen Dechering; Jian Peng; Richard C Gerkin; Alexander B Wiltschko
Source: check_circle
Crossref

Supervised biological network alignment with graph neural networks

2023-04-28 | Preprint
Contributors: Kerr Ding; Sheng Wang; Yunan Luo
Source: check_circle
Crossref

Enzyme function prediction using contrastive learning

Science
2023-03-31 | Journal article
Contributors: Tianhao Yu; Haiyang Cui; Jianan Canal Li; Yunan Luo; Guangde Jiang; Huimin Zhao
Source: check_circle
Crossref

Sensing the shape of functional proteins with topology

Nature Computational Science
2023-02-20 | Journal article
Contributors: Yunan Luo
Source: check_circle
Crossref

Contrastive learning of protein representations with graph neural networks for structural and functional annotations

Pacific Symposium on Biocomputing (PSB) 2023
2022-11 | Journal article
Contributors: Jiaqi Luo; Yunan Luo
Source: Self-asserted source
Yunan Luo

Next Decade’s AI-Based Drug Development Features Tight Integration of Data and Computation

Health Data Science
2022-01 | Journal article
Contributors: Yunan Luo; Jian Peng; Jianzhu Ma
Source: check_circle
Crossref

scPretrain: multi-task self-supervised learning for cell-type classification

Bioinformatics
2022-01-06 | Journal article
Part of ISSN: 1367-4803
Part of ISSN: 1460-2059
Source: Self-asserted source
Yunan Luo

An integrative drug repositioning framework discovered a potential therapeutic agent targeting COVID-19

Signal Transduction and Targeted Therapy
2021-12 | Journal article
Part of ISSN: 2059-3635
Contributors: Yunan Luo
Source: Self-asserted source
Yunan Luo

Crowdsourced mapping of unexplored target space of kinase inhibitors

Nature Communications
2021-12 | Journal article
Part of ISSN: 2041-1723
Contributors: Yunan Luo
Source: Self-asserted source
Yunan Luo

ECNet is an evolutionary context-integrated deep learning framework for protein engineering

Nature Communications
2021-09-30 | Journal article
Contributors: Yunan Luo; Guangde Jiang; Tianhao Yu; Yang Liu; Lam Vo; Hantian Ding; Yufeng Su; Wesley Wei Qian; Huimin Zhao; Jian Peng
Source: check_circle
Crossref

Deep geometric representations for modeling effects of mutations on protein-protein binding affinity

PLOS Computational Biology
2021-08-04 | Journal article
Contributors: Xianggen Liu; Roland L. Dunbrack; Yunan Luo; Pengyong Li; Sen Song; Jian Peng
Source: check_circle
Crossref

Few-shot learning creates predictive models of drug response that translate from high-throughput screens to individual patients

Nature Cancer
2021-02 | Journal article
Part of ISSN: 2662-1347
Source: Self-asserted source
Yunan Luo

cancerAlign: Stratifying tumors by unsupervised alignment across cancer types

2020-11-20 | Preprint
Contributors: Bowen Gao; Yunan Luo; Jianzhu Ma; Sheng Wang
Source: check_circle
Crossref

scPretrain: Multi-task self-supervised learning for cell type classification

2020-11-20 | Preprint
Contributors: Ruiyi Zhang; Yunan Luo; Jianzhu Ma; Ming Zhang; Sheng Wang
Source: check_circle
Crossref

STAIR 2.0: A Generic and Automatic Algorithm to Fuse Modis, Landsat, and Sentinel-2 to Generate 10 m, Daily, and Cloud-/Gap-Free Surface Reflectance Product

Remote Sensing
2020-10-01 | Journal article
Contributors: Yunan Luo; Kaiyu Guan; Jian Peng; Sibo Wang; Yizhi Huang
Source: check_circle
Crossref

When causal inference meets deep learning

Nature Machine Intelligence
2020-08-12 | Journal article
Contributors: Yunan Luo; Jian Peng; Jianzhu Ma
Source: check_circle
Crossref

Characterization of SARS-CoV-2 viral diversity within and across hosts

2020-05-13 | Preprint
Contributors: Palash Sashittal; Yunan Luo; Jian Peng; Mohammed El-Kebir
Source: check_circle
Crossref

Integrating Deep Neural Networks and Symbolic Inference for Organic Reactivity Prediction

chemRxiv
2020-01-21 | Preprint
Source: Self-asserted source
Yunan Luo

Evolutionary context-integrated deep sequence modeling for protein engineering

2020-01-17 | Preprint
Contributors: Yunan Luo; Lam Vo; Hantian Ding; Yufeng Su; Yang Liu; Wesley Wei Qian; Huimin Zhao; Jian Peng
Source: check_circle
Crossref

Integrating thermodynamic and sequence contexts improves protein-RNA binding prediction

PLOS Computational Biology
2019-09-04 | Journal article
Contributors: Yufeng Su; Ferhat Ay; Yunan Luo; Xiaoming Zhao; Yang Liu; Jian Peng
Source: check_circle
Crossref

Metagenomic binning through low-density hashing

Bioinformatics
2019-01-15 | Journal article
Part of ISSN: 1367-4803
Part of ISSN: 1460-2059
Source: Self-asserted source
Yunan Luo

Mitigating Data Scarcity in Protein Binding Prediction Using Meta-Learning

2019-01-12 | Other
Contributors: Yunan Luo; Jianzhu Ma; Xiaoming Zhao; Yufeng Su; Yang Liu; Trey Ideker; Jian Peng
Source: check_circle
Crossref

STAIR: A generic and fully-automated method to fuse multiple sources of optical satellite data to generate a high-resolution, daily and cloud-/gap-free surface reflectance product

Remote Sensing of Environment
2018-09 | Journal article
Contributors: Yunan Luo; Kaiyu Guan; Jian Peng
Source: check_circle
Crossref

Deciphering signaling specificity with interpretable deep neural networks

2018-03-25 | Other
Contributors: Yunan Luo; Jianzhu Ma; Yang Liu; Qing Ye; Trey Ideker; Jian Peng
Source: check_circle
Crossref

Large-scale integration of heterogeneous pharmacogenomic data for identifying drug mechanism of action.

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing
2018-01-01 | Journal article
Contributors: Yunan Luo
Source: Self-asserted source
Yunan Luo

A network integration approach for drug-target interaction prediction and computational drug repositioning from heterogeneous information

Nature Communications
2017-09-18 | Journal article
Contributors: Yunan Luo; Xinbin Zhao; Jingtian Zhou; Jinglin Yang; Yanqing Zhang; Wenhua Kuang; Jian Peng; Ligong Chen; Jianyang Zeng
Source: check_circle
Crossref

Peer review (17 reviews for 9 publications/grants)

Review activity for ACS synthetic biology. (7)
Review activity for iScience. (1)
Review activity for Journal of chemical information and modeling. (1)
Review activity for Nature biotechnology. (2)
Review activity for Nature computational science. (2)
Review activity for Nature machine intelligence. (1)
Review activity for Nature methods. (1)
Review activity for PLoS computational biology. (1)
Review activity for Science. (1)