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Employment (1)

University of California San Francisco: San Francisco, CA, US

2019 to present | Assistant Professor (Neurology, Bioengineering and Therapeutic Sciences)
Employment
Source: Self-asserted source
Reza Abbasi Asl

Works (24)

7T MRI Synthesization from 3T Acquisitions

2024 | Book chapter
Contributors: Qiming Cui; Duygu Tosun; Pratik Mukherjee; Reza Abbasi-Asl
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Crossref

Motor learning leverages coordinated low-frequency cortico-basal ganglia activity to optimize motor preparation in humans with Parkinson’s Disease

2024-09-15 | Preprint
Contributors: Kara N. Presbrey; Thomas A. Wozny; Kenneth H. Louie; Simon Little; Philip A. Starr; Reza Abbasi-Asl; Doris D. Wang
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Crossref

Unsupervised pattern identification in spatial gene expression atlas reveals mouse brain regions beyond established ontology

Proceedings of the National Academy of Sciences
2024-09-10 | Journal article
Contributors: Robert Cahill; Yu Wang; R. Patrick Xian; Alex J. Lee; Hongkui Zeng; Bin Yu; Bosiljka Tasic; Reza Abbasi-Asl
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Crossref

Interpretable video-based tracking and quantification of parkinsonism clinical motor states

npj Parkinson's Disease
2024-06-25 | Journal article
Contributors: Daniel Deng; Jill L. Ostrem; Vy Nguyen; Daniel D. Cummins; Julia Sun; Anupam Pathak; Simon Little; Reza Abbasi-Asl
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Crossref

Practical Considerations for Machine Learning-Enabled Discoveries in Spatial Transcriptomics

GEN Biotechnology
2024-06-01 | Journal article
Contributors: Alex J. Lee; Robert Cahill; Reza Abbasi-Asl
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Crossref

Data-driven fine-grained region discovery in the mouse brain with transformers

2024-05-07 | Preprint
Contributors: Alex Jihun Lee; Shenqin Yao; Nicholas Lusk; Lydia Ng; Michael Kunst; Hongkui Zeng; Bosiljka Tasic; Reza Abbasi-Asl
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Crossref

The entropic heart: Tracking the psychedelic state via heart rate dynamics

2023-11-09 | Preprint
Contributors: Fernando E. Rosas; Pedro A.M. Mediano; Christopher Timmermann; Andrea I Luppi; Diego Candia-Rivera; Reza Abbasi-Asl; Adam Gazzaley; Morten L. Kringelbach; Suresh Muthukumaraswamy; Daniel Bor et al.
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Crossref

Interpretable Video-Based Tracking and Quantification of Parkinsonism Clinical Motor States

2023-11-07 | Preprint
Contributors: Daniel Deng; Jill L. Ostrem; Vy Nguyen; Daniel D. Cummins; Julia Sun; Anupam Pathak; Simon Little; Reza Abbasi-Asl
Source: check_circle
Crossref

Unsupervised pattern discovery in spatial gene expression atlas reveals mouse brain regions beyond established ontology

2023-03-12 | Preprint
Contributors: Robert Cahill; Yu Wang; R. Patrick Xian; Alex J. Lee; Hongkui Zeng; Bin Yu; Bosiljka Tasic; Reza Abbasi-Asl
Source: check_circle
Crossref

Compression-enabled interpretability of voxelwise encoding models

2022-07-11 | Preprint
Contributors: Fatemeh Kamali; Amir Abolfazl Suratgar; Mohammadbagher Menhaj; Reza Abbasi-Asl
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Crossref

Robust Registration of Medical Images in the Presence of Spatially-Varying Noise

Algorithms
2022-02-10 | Journal article
Contributors: Reza Abbasi-Asl; Aboozar Ghaffari; Emad Fatemizadeh
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Crossref
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Preferred source (of 2)‎

Superficial bound of the depth limit of two-photon imaging in mouse brain

eNeuro
2020 | Journal article
EID:

2-s2.0-85078508226

Part of ISSN: 23732822
Contributors: Takasaki, K.; Abbasi-Asl, R.; Waters, J.
Source: Self-asserted source
Reza Abbasi Asl via Scopus - Elsevier

Systematic Integration of Structural and Functional Data into Multi-scale Models of Mouse Primary Visual Cortex

Neuron
2020 | Journal article
EID:

2-s2.0-85082815928

Part of ISSN: 10974199 08966273
Contributors: Billeh, Y.N.; Cai, B.; Gratiy, S.L.; Dai, K.; Iyer, R.; Gouwens, N.W.; Abbasi-Asl, R.; Jia, X.; Siegle, J.H.; Olsen, S.R. et al.
Source: Self-asserted source
Reza Abbasi Asl via Scopus - Elsevier

3-photon calcium imaging of deep cortical layers for functional connectomics

Optics InfoBase Conference Papers
2019 | Conference paper
EID:

2-s2.0-85090270858

Contributors: Takasaki, K.; Larkin, J.; Abbasi-Asl, R.; Denman, D.; Millman, D.; de Vries, S.; Takeno, M.; da Costa, N.M.; Clay Reid, R.; Waters, J.
Source: Self-asserted source
Reza Abbasi Asl via Scopus - Elsevier

Brain-Computer Interface in Virtual Reality

International IEEE/EMBS Conference on Neural Engineering, NER
2019 | Conference paper
EID:

2-s2.0-85066749075

Part of ISSN: 19483554 19483546
Contributors: Abbasi-Asl, R.; Keshavarzi, M.; Chan, D.Y.
Source: Self-asserted source
Reza Abbasi Asl via Scopus - Elsevier

Definitions, methods, and applications in interpretable machine learning

Proceedings of the National Academy of Sciences of the United States of America
2019 | Journal article
EID:

2-s2.0-85074279444

Part of ISSN: 10916490 00278424
Contributors: Murdoch, W.J.; Singh, C.; Kumbier, K.; Abbasi-Asl, R.; Yu, B.
Source: Self-asserted source
Reza Abbasi Asl via Scopus - Elsevier

Visual physiology of the layer 4 cortical circuit in silico

PLOS Computational Biology
2018-11-12 | Journal article
Contributors: Anton Arkhipov; Brent Doiron; Nathan W. Gouwens; Yazan N. Billeh; Sergey Gratiy; Ramakrishnan Iyer; Ziqiang Wei; Zihao Xu; Reza Abbasi-Asl; Jim Berg et al.
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Crossref
grade
Preferred source (of 2)‎

Do retinal ganglion cells project natural scenes to their principal subspace and whiten them?

Conference Record - Asilomar Conference on Signals, Systems and Computers
2017 | Conference paper
EID:

2-s2.0-85016299739

Part of ISSN: 10586393
Contributors: Abbasi-Asl, R.; Pehlevan, C.; Yu, B.; Chklovskii, D.
Source: Self-asserted source
Reza Abbasi Asl via Scopus - Elsevier

A new method for estimating the longevity and degradation of photovoltaic systems considering weather states

Frontiers in Energy
2016 | Journal article
EID:

2-s2.0-84964063378

Part of ISSN: 20951698 20951701
Contributors: Ahadi, A.; Hayati, H.; Mitra, J.; Abbasi-Asl, R.; Awodele, K.
Source: Self-asserted source
Reza Abbasi Asl via Scopus - Elsevier

Automatic B-spline image registration using histogram-based landmark extraction

2012 IEEE-EMBS Conference on Biomedical Engineering and Sciences, IECBES 2012
2012 | Conference paper
EID:

2-s2.0-84876750908

Contributors: Ghanbari, A.; Abbasi-Asl, R.; Ghaffari, A.; Fatemizadeh, E.
Source: Self-asserted source
Reza Abbasi Asl via Scopus - Elsevier

Hammerstein-Wiener model: A new approach to the estimation of formal neural information

Basic and Clinical Neuroscience
2012 | Journal article
EID:

2-s2.0-84873460768

Part of ISSN: 2008126X
Contributors: Abbasi-Asl, R.; Khorsandi, R.; Vosooghi-Vahdat, B.
Source: Self-asserted source
Reza Abbasi Asl via Scopus - Elsevier

Estimation of muscle force with EMG signals using Hammerstein-Wiener model

IFMBE Proceedings
2011 | Conference paper
EID:

2-s2.0-79960025178

Part of ISSN: 16800737
Contributors: Abbasi-Asl, R.; Khorsandi, R.; Farzampour, S.; Zahedi, E.
Source: Self-asserted source
Reza Abbasi Asl via Scopus - Elsevier

MMRO: A feature selection criterion for MR images based on alpha stable filter responses

2011 7th Iranian Conference on Machine Vision and Image Processing, MVIP 2011 - Proceedings
2011 | Conference paper
EID:

2-s2.0-84855923553

Contributors: Abbasi-Asl, R.; Fatemizadeh, E.
Source: Self-asserted source
Reza Abbasi Asl via Scopus - Elsevier

Analysis and design of a push-push oscillator in s-band

2010 10th Mediterranean Microwave Symposium, MMS 2010
2010 | Conference paper
EID:

2-s2.0-78650131179

Contributors: Abadpour, S.; Abbasi-Asl, R.; Moradi, G.
Source: Self-asserted source
Reza Abbasi Asl via Scopus - Elsevier

Peer review (6 reviews for 5 publications/grants)

Review activity for Artificial intelligence review. (1)
Review activity for Cell reports. (2)
Review activity for Information. (1)
Review activity for Nature communications (1)
Review activity for Nature machine intelligence. (1)