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Employment (1)

ZHAW Zurich University of Applied Sciences: Wädenswil, CH

2014-02-01 to present | Professor / Director of Bioinformatics Center (Institute of Computational Life Sciences (ICLS))
Employment
Source: Self-asserted source
Maria Anisimova

Funding (8)

Trans-omic approach to colorectal cancer: an integrative computational and clinical perspective

2020-10-01 to 2024-09-30 | Grant
Swiss National Science Foundation (Bern, CH)
GRANT_NUMBER: 193832
Source: Self-asserted source
Maria Anisimova via DimensionsWizard

The effect of programmed ribosomal frameshifting on codon usage bias

2019-03-01 to 2023-02-28 | Grant
Swiss National Science Foundation (Bern, CH)
GRANT_NUMBER: 182330
Source: Self-asserted source
Maria Anisimova via DimensionsWizard

Repeat protein Function Refinement, Annotation and Classification of Topologies

2019-01-01 to 2024-06-30 | Grant
European Commission (Brussels, BE)
GRANT_NUMBER: 823886
Source: Self-asserted source
Maria Anisimova via DimensionsWizard

Frequentist estimation of the evolutionary history of sequences with substitutions and indels

2018-05-01 to 2023-02-28 | Grant
Swiss National Science Foundation (Bern, CH)
GRANT_NUMBER: 176316
Source: Self-asserted source
Maria Anisimova via DimensionsWizard

Bio-SODA: Enabling Complex, Semantic Queries to Bioinformatics Databases through Intuitive Searching over Data

2017-04-01 to 2021-03-31 | Grant
Swiss National Science Foundation (Bern, CH)
GRANT_NUMBER: 167149
Source: Self-asserted source
Maria Anisimova via DimensionsWizard

Discovering evolutionary innovations by assessing variation and natural selection in protein tandem repeats

2016-10-01 to 2020-02-29 | Grant
European Cooperation in Science and Technology (Brussels, BE)
GRANT_NUMBER: C16.0072
Source: Self-asserted source
Maria Anisimova via DimensionsWizard

Fast joint estimation of alignment and phylogeny from genomic sequences in a frequentist framework

2015-02-01 to 2018-01-31 | Grant
Swiss National Science Foundation (Bern, CH)
GRANT_NUMBER: 157064
Source: Self-asserted source
Maria Anisimova via DimensionsWizard

The evolution of proteins with tandem repeats: a large-scale study of rates, selective forces, complex patterns and associations with human disease

2010-08-01 to 2013-07-31 | Grant
Swiss National Science Foundation (Bern, CH)
GRANT_NUMBER: 127325
Source: Self-asserted source
Maria Anisimova via DimensionsWizard

Works (50 of 113)

Items per page:
Page 1 of 3

Multicancer analyses of short tandem repeat variations reveal shared gene regulatory mechanisms

2025-01-07 | Preprint
Contributors: Feifei Xia; Max Verbiest; Oxana Lundström; Tugce Bilgin Sonay; Michael Baudis; Maria Anisimova
Source: check_circle
Crossref

Genotyping Short Tandem Repeats Across Copy Number Alterations, Aneuploidies, and Polyploid Organisms

2024-12-17 | Preprint
Contributors: Max A. Verbiest; Elena Grassi; Andrea Bertotti; Maria Anisimova
Source: check_circle
Crossref

Insertions and Deletions: Computational Methods, Evolutionary Dynamics, and Biological Applications

Molecular Biology and Evolution
2024-09-04 | Journal article
Contributors: Benjamin D Redelings; Ian Holmes; Gerton Lunter; Tal Pupko; Maria Anisimova; Brandon Gaut
Source: check_circle
Crossref

Please Mind the Gap: Indel-Aware Parsimony for Fast and Accurate Ancestral Sequence Reconstruction and Multiple Sequence Alignment Including Long Indels

Molecular Biology and Evolution
2024-07-03 | Journal article
Contributors: Clara Iglhaut; Jūlija Pečerska; Manuel Gil; Maria Anisimova; Naruya Saitou
Source: check_circle
Crossref

Short tandem repeat mutations regulate gene expression in colorectal cancer

2023-11-29 | Preprint
Contributors: Max A. Verbiest; Oxana Lundström; Feifei Xia; Michael Baudis; Tugce Bilgin Sonay; Maria Anisimova
Source: check_circle
Crossref

A novel hypervariable variable number tandem repeat in the dopamine transporter gene (SLC6A3)

Life Science Alliance
2023-04 | Journal article
Contributors: Abner T Apsley; Emma R Domico; Max A Verbiest; Carly A Brogan; Evan R Buck; Andrew J Burich; Kathleen M Cardone; Wesley J Stone; Maria Anisimova; David J Vandenbergh
Source: check_circle
Crossref

Mutation and selection processes regulating short tandem repeats give rise to genetic and phenotypic diversity across species

Journal of Evolutionary Biology
2023-02 | Journal article
Contributors: Max Verbiest; Mikhail Maksimov; Ye Jin; Maria Anisimova; Melissa Gymrek; Tugce Bilgin Sonay
Source: check_circle
Crossref

Characterization of a Novel Hyper-Variable Variable Number Tandem Repeat in the Dopamine Transporter Gene (SLC6A3)

bioRxiv
2022 | Journal article
Source: Self-asserted source
Maria Anisimova
grade
Preferred source (of 2)‎

Cross-reactive immunity potentially drives global oscillation and opposed alternation patterns of seasonal influenza A viruses

Scientific Reports
2022 | Journal article
Source: Self-asserted source
Maria Anisimova

Editorial overview: Virus bioinformatics-empowering genomics of pathogens, viromes, and the virosphere across divergence scales

Current opinion in virology
2022 | Other
Part of ISSN: 1879-6257
Source: Self-asserted source
Maria Anisimova
grade
Preferred source (of 2)‎

Image-based assessment of extracellular mucin-to-tumor area predicts consensus molecular subtypes (CMS) in colorectal cancer

Modern pathology
2022 | Journal article
Part of ISSN: 0893-3952
Source: Self-asserted source
Maria Anisimova
grade
Preferred source (of 2)‎

Ontology-Aware Biomedical Relation Extraction

Source: Self-asserted source
Maria Anisimova
grade
Preferred source (of 3)‎

Bio-SODA UX: enabling natural language question answering over knowledge graphs with user disambiguation

Distributed and Parallel Databases
2022-09 | Journal article
Part of ISSN: 0926-8782
Part of ISSN: 1573-7578
Contributors: Maria Anisimova
Source: Self-asserted source
Maria Anisimova
grade
Preferred source (of 2)‎

ARPIP: Ancestral Sequence Reconstruction with Insertions and Deletions under the Poisson Indel Process

Systematic Biology
2022-07-22 | Journal article
Part of ISSN: 1063-5157
Part of ISSN: 1076-836X
Contributors: Maria Anisimova
Source: Self-asserted source
Maria Anisimova
grade
Preferred source (of 2)‎

Impact of Diabetes Mellitus on Voice: A Methodological Commentary

Journal of Voice
2022-03 | Journal article
Part of ISSN: 0892-1997
Contributors: Maria Anisimova
Source: Self-asserted source
Maria Anisimova
grade
Preferred source (of 2)‎

Computational Literature-based Discovery for Natural Products Research: Current State and Future Prospects

Frontiers in Bioinformatics
2022-03-15 | Journal article
Part of ISSN: 2673-7647
Contributors: Maria Anisimova
Source: Self-asserted source
Maria Anisimova
grade
Preferred source (of 2)‎

Beyond Microsatellite Instability: Intrinsic Disorder as a Potential Link Between Protein Short Tandem Repeats and Cancer

Frontiers in Bioinformatics
2021 | Journal article
Source: Self-asserted source
Maria Anisimova

Bio-SODA: Enabling natural language question answering over knowledge graphs without training data

33rd International Conference on Scientific and Statistical Database Management
2021 | Conference paper
Source: Self-asserted source
Maria Anisimova
grade
Preferred source (of 2)‎

Joint Alignment and Tree Inference

bioRxiv
2021 | Journal article
Source: Self-asserted source
Maria Anisimova
grade
Preferred source (of 2)‎

ProPIP: a tool for progressive multiple sequence alignment with Poisson Indel Process

BMC bioinformatics
2021 | Journal article
Part of ISSN: 1471-2105
Source: Self-asserted source
Maria Anisimova
grade
Preferred source (of 2)‎

Querying knowledge graphs in natural language

Journal of Big Data
2021 | Journal article
Part of ISSN: 2196-1115
Source: Self-asserted source
Maria Anisimova
grade
Preferred source (of 4)‎

The use of the rare TTA codon in Streptomyces genes: significance of the codon context?

Indian journal of microbiology
2021 | Journal article
Source: Self-asserted source
Maria Anisimova

TRAL 2.0: tandem repeat detection with circular profile hidden Markov models and evolutionary aligner

Frontiers in Bioinformatics
2021 | Journal article
Source: Self-asserted source
Maria Anisimova

Accelerating phylogeny-aware alignment with indel evolution using short time Fourier transform

NAR genomics and bioinformatics
2020 | Journal article
Source: Self-asserted source
Maria Anisimova

Towards creating a new triple store for literature-based discovery

Pacific-Asia Conference on Knowledge Discovery and Data Mining
2020 | Conference paper
Source: Self-asserted source
Maria Anisimova

A New Census of Protein Tandem Repeats and Their Relationship with Intrinsic Disorder

Genes
2020-04 | Journal article | Author
Contributors: Matteo Delucchi; Elke Schaper; Oxana Sachenkova; Arne Elofsson; Maria Anisimova
Source: check_circle
Multidisciplinary Digital Publishing Institute
grade
Preferred source (of 2)‎

Enabling semantic queries across federated bioinformatics databases

Database
2019 | Journal article
Source: Self-asserted source
Maria Anisimova

Evolutionary Genomics

Methods in Molecular Biology
2019 | Book
Part of ISSN: 1064-3745
Contributors: Maria Anisimova
Source: Self-asserted source
Maria Anisimova via Crossref Metadata Search

Selection acting on genomes

Evolutionary Genomics
2019 | Book chapter
Source: Self-asserted source
Maria Anisimova

Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases

Nucleic acids research
2019 | Journal article
Source: Self-asserted source
Maria Anisimova

Accounting for programmed ribosomal frameshifting in the computation of codon usage bias indices

G3: Genes, Genomes, Genetics
2018 | Journal article
Source: Self-asserted source
Maria Anisimova

Genomes reveal marked differences in the adaptive evolution between orangutan species

2018 | Journal article
Source: Self-asserted source
Maria Anisimova

Genomes reveal marked differences in the adaptive evolution between orangutan species

Genome biology
2018 | Journal article
Source: Self-asserted source
Maria Anisimova

Genomic insights into evolution of AdpA family master regulators of morphological differentiation and secondary metabolism in Streptomyces

Journal of Molecular Evolution
2018 | Journal article
Source: Self-asserted source
Maria Anisimova

Progressive multiple sequence alignment with indel evolution

BMC bioinformatics
2018 | Journal article
Part of ISSN: 1471-2105
Source: Self-asserted source
Maria Anisimova
grade
Preferred source (of 2)‎

Cross-reactive immunity drives global oscillation and opposed alternation patterns of seasonal influenza A viruses

bioRxiv
2017 | Journal article
Source: Self-asserted source
Maria Anisimova
grade
Preferred source (of 2)‎

Detecting selection signature in genomics sequences

CBID Computational Biology for Infectious Diseases Summer School, Quy Nhon, Vietnam, 17-24 September 2017
2017 | Conference paper
Source: Self-asserted source
Maria Anisimova

Morphometric, behavioral, and genomic evidence for a new orangutan species

Current Biology
2017 | Journal article
Source: Self-asserted source
Maria Anisimova

Morphometric, Behavioral, and Genomic Evidence for a New Orangutan Species (vol 27, pg 3487, 2017)

Current Biology
2017 | Journal article
Source: Self-asserted source
Maria Anisimova

Phylogenetics of tandem repeats with circular HMMs: a case study on Armadillo Repeat Proteins

NGP-Net 2017, Symposium on Non-globular Proteins, Kosice, Slovakia, August 2017
2017 | Conference paper
Source: Self-asserted source
Maria Anisimova

Phylogenetics reveals competition of human flu subtypes

Transfer
2017 | Journal article
Source: Self-asserted source
Maria Anisimova

Progressive Multiple Sequence Alignment with the Poisson Indel Process

bioRxiv
2017 | Journal article
Source: Self-asserted source
Maria Anisimova
grade
Preferred source (of 2)‎

As a stone thrown in a still pond: predicting human influenza epidemiological dynamics after 2009 A/pH1N1 pandemic explosion

ZHAW-Forum «Health & Life Sciences», Wädenswil, 2016
2016 | Conference paper
Source: Self-asserted source
Maria Anisimova

DNA polymorphism and selection at the bindin locus in three Strongylocentrotus sp.(Echinoidea)

BMC genetics
2016 | Journal article
Source: Self-asserted source
Maria Anisimova

Evolution from mathematician to bioinformatician by natural selection

POST-DOC-DOC 2.0, Life Sciences, Schloss Au, Wädenswil, 2016
2016 | Conference paper
Source: Self-asserted source
Maria Anisimova

Functional assignment to positively selected sites in the core type III effector RipG 7 from R alstonia solanacearum

Molecular plant pathology
2016 | Journal article
Source: Self-asserted source
Maria Anisimova

The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases

Nucleic acids research
2016 | Journal article
Source: Self-asserted source
Maria Anisimova

Antibody-specific model of amino acid substitution for immunological inferences from alignments of antibody sequences

Molecular biology and evolution
2015 | Journal article
Source: Self-asserted source
Maria Anisimova

Computational methods for detecting and analyzing tandem repeats

Non-globular proteins-from sequence to structure, function and application in molecular physiopathology, NGP-NET Symposium, Portol, Spain, 6-9 October 2015
2015 | Conference paper
Source: Self-asserted source
Maria Anisimova

Darwin and Fisher meet at biotech: on the potential of computational molecular evolution in industry

BMC Evolutionary Biology
2015 | Journal article
Source: Self-asserted source
Maria Anisimova
grade
Preferred source (of 2)‎
Items per page:
Page 1 of 3

Peer review (2 reviews for 2 publications/grants)

Review activity for F1000Research. (1)
Review activity for Nature communications (1)