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Computational Biology, Bioinformatics, Transcriptomics
United Kingdom

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Employment (2)

University of Edinburgh: Edinburgh, GB

2020-09-15 to present | Reader in Bioinformatics (Institute of Ecology and Evolution, School of Biological Sciences)
Employment
Source: Self-asserted source
Cei Abreu-Goodger

Laboratorio Nacional de Genómica para la Biodiversidad: Irapuato, Guanajuato, MX

2010-10-01 to 2021-12-31 | Assistant Professor
Employment
Source: Self-asserted source
Cei Abreu-Goodger

Works (50 of 63)

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Page 1 of 2

Hybridization alters maternal and paternal genome contributions to early plant embryogenesis

Development
2022-11 | Journal article
Part of ISSN: 0950-1991
Contributors: Jaime Alaniz-Fabián; Axel Orozco-Nieto; Cei Abreu-Goodger; C. Stewart Gillmor
Source: Self-asserted source
Cei Abreu-Goodger via Crossref Metadata Search

Translation Comes First: Ancient and Convergent Selection of Codon Usage Bias Across Prokaryotic Genomes

Journal of Molecular Evolution
2022-09 | Journal article
Part of ISSN: 0022-2844
Contributors: Francisco González-Serrano; Cei Abreu-Goodger; Luis Delaye
Source: Self-asserted source
Cei Abreu-Goodger via Crossref Metadata Search

Differential gene expression reflects larval development and survival of monarch butterflies on different milkweed hosts

2020-09-06 | Preprint
Contributors: Pablo M. Gonzalez-De-la-Rosa; Mariana Ramirez Loustalot-Laclette; Cei Abreu-Goodger; Therese Ann Markow
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Crossref

Narnaviruses: novel players in fungal–bacterial symbioses

The ISME Journal
2020-07-01 | Journal article
Contributors: Astrid N Espino-Vázquez; J Roberto Bermúdez-Barrientos; J Francisco Cabrera-Rangel; Gonzalo Córdova-López; Faviola Cardoso-Martínez; Azul Martínez-Vázquez; David A Camarena-Pozos; Stephen J Mondo; Teresa E Pawlowska; Cei Abreu-Goodger et al.
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Crossref

Disentangling sRNA-Seq data to study RNA communication between species

Nucleic Acids Research
2020-02-28 | Journal article
Contributors: José Roberto Bermúdez-Barrientos; Obed Ramírez-Sánchez; Franklin Wang-Ngai Chow; Amy H Buck; Cei Abreu-Goodger
Source: check_circle
Crossref

Maternal genome dominance in early plant embryogenesis

2020-01-15 | Preprint
Contributors: Jaime Alaniz-Fabián; Daoquan Xiang; Gerardo Del Toro-De León; Axel Orozco-Nieto; Peng Gao; Andrew Sharpe; Leon V. Kochian; Gopalan Selvaraj; Nathan Springer; Cei Abreu-Goodger et al.
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Crossref

Secretion of an Argonaute protein by a parasitic nematode and the evolution of its siRNA guides

Nucleic acids research
2019 | Journal article
EID:

2-s2.0-85063076570

Contributors: Chow, F.W.-N.; Koutsovoulos, G.; Ovando-Vázquez, C.; Neophytou, K.; Bermúdez-Barrientos, J.R.; Laetsch, D.R.; Robertson, E.; Kumar, S.; Claycomb, J.M.; Blaxter, M. et al.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

Highlights of the mini‐symposium on extracellular vesicles in inter‐organismal communication, held in Munich, Germany, August 2018

Journal of Extracellular Vesicles
2019-12 | Journal article
Contributors: E. Bielska; P.R.J. Birch; A.H. Buck; C. Abreu‐Goodger; R.W. Innes; H. Jin; M.W. Pfaffl; S. Robatzek; N. Regev‐Rudzki; C. Tisserant et al.
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Crossref
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Disentangling sRNA-Seq data to study RNA communication between species

2019-01-02 | Other
Contributors: JR Bermúdez-Barrientos; O Ramírez-Sánchez; FWN Chow; AH Buck; C Abreu-Goodger
Source: check_circle
Crossref

Danger signals activate a putative innate immune system during regeneration in a filamentous fungus

PLoS Genetics
2018 | Journal article
EID:

2-s2.0-85058009108

Contributors: Medina-Castellanos, E.; Villalobos-Escobedo, J.M.; Riquelme, M.; Read, N.D.; Abreu-Goodger, C.; Herrera-Estrella, A.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

Identification of miR-708-5p in peripheral blood monocytes: Potential marker for postmenopausal osteoporosis in Mexican-Mestizo population

Experimental Biology and Medicine
2018 | Journal article
EID:

2-s2.0-85056934529

Contributors: De-La-Cruz-Montoya, A.H.; Ramírez-Salazar, E.G.; Martínez-Aguilar, M.M.; González-de-la-Rosa, P.M.; Quiterio, M.; Abreu-Goodger, C.; Salmerón, J.; Velázquez-Cruz, R.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

Sex determination and differentiation genes in a functional hermaphrodite scallop, Nodipecten subnodosus

Marine Genomics
2018 | Journal article
EID:

2-s2.0-85035105649

Contributors: Galindo-Torres, P.; García-Gasca, A.; Llera-Herrera, R.; Escobedo-Fregoso, C.; Abreu-Goodger, C.; Ibarra, A.M.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

Precursor miRNAs are trafficked along axons associated with vesicles and locally processed to regulate growth cone steering

2018-11 | Other
Contributors: Eloina Corradi; Antoneta Gavoci; Stephanie Strohbuecker; Michela Roccuzzo; Irene Dalla Costa; Archana Iyer; Simone Bridi; Gabriela Santoz Rodriguez; Cei Abreu-Goodger; Marie-Laure Baudet
Source: Self-asserted source
Cei Abreu-Goodger via Crossref Metadata Search

An extracellular Argonaute protein mediates export of repeat-associated small RNAs into vesicles in parasitic nematodes

2018-06-11 | Other
Contributors: Franklin Wang-Ngai Chow; Georgios Koutsovoulos; Cesaré Ovando-Vázquez; Dominik R Laetsch; Jose Bermúdez-Barrientos; Julie Claycomb; Mark Blaxter; Cei Abreu-Goodger; Amy Buck
Source: Self-asserted source
Cei Abreu-Goodger via Crossref Metadata Search

Annotating and quantifying pri-miRNA transcripts using RNA-Seq data of wild type and serrate-1 globular stage embryos of Arabidopsis thaliana

Data in Brief
2017 | Journal article
EID:

2-s2.0-85032181842

Contributors: Lepe-Soltero, D.; Armenta-Medina, A.; Xiang, D.; Datla, R.; Gillmor, C.S.; Abreu-Goodger, C.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

Arabidopsis thaliana miRNAs promote embryo pattern formation beginning in the zygote

Developmental Biology
2017 | Journal article
EID:

2-s2.0-85029676307

Contributors: Armenta-Medina, A.; Lepe-Soltero, D.; Xiang, D.; Datla, R.; Abreu-Goodger, C.; Gillmor, C.S.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

miR-182 Regulates Slit2-Mediated Axon Guidance by Modulating the Local Translation of a Specific mRNA

Cell Reports
2017 | Journal article
EID:

2-s2.0-85011656428

Contributors: Bellon, A.; Iyer, A.; Bridi, S.; Lee, F.C.Y.; Ovando-Vázquez, C.; Corradi, E.; Longhi, S.; Roccuzzo, M.; Strohbuecker, S.; Naik, S. et al.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

RNA-mediated communication between helminths and their hosts: The missing links

RNA Biology
2017 | Journal article
EID:

2-s2.0-85018849200

Contributors: Claycomb, J.; Abreu-Goodger, C.; Buck, A.H.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

Transcriptional responses of ecologically diverse Drosophila species to larval diets differing in relative sugar and protein ratios

PLoS ONE
2017 | Journal article
EID:

2-s2.0-85029217972

Contributors: Nazario-Yepiz, N.O.; Loustalot-Laclette, M.R.; Carpinteyro-Ponce, J.; Abreu-Goodger, C.; Markow, T.A.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

Genome evolution in three species of cactophilic drosophila

G3: Genes, Genomes, Genetics
2016 | Journal article
EID:

2-s2.0-84994682422

Contributors: Sanchez-Flores, A.; Peñaloza, F.; Carpinteyro-Ponce, J.; Nazario-Yepiz, N.; Abreu-Goodger, C.; Machado, C.A.; Markow, T.A.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

Improving microRNA target prediction with gene expression profiles

BMC Genomics
2016 | Journal article
EID:

2-s2.0-84969263224

Contributors: Ovando-Vázquez, C.; Lepe-Soltero, D.; Abreu-Goodger, C.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

The genome, transcriptome, and proteome of the nematode Steinernema carpocapsae: Evolutionary signatures of a pathogenic lifestyle

Scientific Reports
2016 | Journal article
EID:

2-s2.0-84996758811

Contributors: Rougon-Cardoso, A.; Flores-Ponce, M.; Ramos-Aboites, H.E.; Martínez-Guerrero, C.E.; Hao, Y.-J.; Cunha, L.; Rodríguez-Martínez, J.A.; Ovando-Vázquez, C.; Bermúdez-Barrientos, J.R.; Abreu-Goodger, C. et al.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

The IL-4/STAT6 signaling axis establishes a conserved microRNA signature in human and mouse macrophages regulating cell survival via miR-342-3p

Genome Medicine
2016 | Journal article
EID:

2-s2.0-84971539076

Contributors: Czimmerer, Z.; Varga, T.; Kiss, M.; Vázquez, C.O.; Doan-Xuan, Q.M.; Rückerl, D.; Tattikota, S.G.; Yan, X.; Nagy, Z.S.; Daniel, B. et al.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

Erratum: Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity(Nature Communications (2014) 5(5488) 10.1038/ncomms6488)

Nature Communications
2015 | Journal article
EID:

2-s2.0-84945137472

Contributors: Buck, A.H.; Coakley, G.; Simbari, F.; McSorley, H.J.; Quintana, J.F.; Le Bihan, T.; Kumar, S.; Abreu-Goodger, C.; Lear, M.; Harcus, Y. et al.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

High-Throughput profiling of caenorhabditis elegans starvation-responsive microRNAs

PLoS ONE
2015 | Journal article
EID:

2-s2.0-84953341885

Contributors: Garcia-Segura, L.; Abreu-Goodger, C.; Hernandez-Mendoza, A.; Dinkova, T.D.D.; Padilla-Noriega, L.; Perez-Andrade, M.E.; Miranda-Rios, J.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

The maize (Zea mays ssp. mays var. B73) genome encodes 33 members of the purple acid phosphatase family

Frontiers in Plant Science
2015 | Journal article
EID:

2-s2.0-84934877706

Contributors: González-Muñoz, E.; Avendaño, A.-O.-V.; Chávez Montes, R.A.; de Folter, S.; Andrés-Hernández, L.; Abreu-Goodger, C.; Sawers, R.J.H.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

Transcriptome diversity among rice root types during asymbiosis and interaction with arbuscular mycorrhizal fungi

Proceedings of the National Academy of Sciences of the United States of America
2015 | Journal article
EID:

2-s2.0-84930227071

Contributors: Gutjahr, C.; Sawers, R.J.H.; Marti, G.; Andrés-Hernández, L.; Yang, S.-Y.; Casieri, L.; Angliker, H.; Oakeley, E.J.; Wolfender, J.-L.; Abreu-Goodger, C. et al.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

A practical guide to sequencing genomes and transcriptomes

Current Topics in Medicinal Chemistry
2014 | Journal article
EID:

2-s2.0-84894092867

Contributors: Sanchez-Flores, A.; Abreu-Goodger, C.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity

Nature Communications
2014 | Journal article
EID:

2-s2.0-84921530965

Contributors: Buck, A.H.; Coakley, G.; Simbari, F.; McSorley, H.J.; Quintana, J.F.; Le Bihan, T.; Kumar, S.; Abreu-Goodger, C.; Lear, M.; Harcus, Y. et al.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

Global analyses of the effect of different cellular contexts on microRNA targeting

Molecular Cell
2014 | Journal article
EID:

2-s2.0-84896397929

Contributors: Nam, J.-W.; Rissland, O.S.; Koppstein, D.; Abreu-Goodger, C.; Jan, C.; Agarwal, V.; Yildirim, M.A.; Rodriguez, A.; Bartel, D.P.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

The miR-155-PU.1 axis acts on Pax5 to enable efficient terminal B cell differentiation

Journal of Experimental Medicine
2014 | Journal article
EID:

2-s2.0-84908252748

Contributors: Lu, D.; Nakagawa, R.; Lazzaro, S.; Staudacher, P.; Abreu-Goodger, C.; Henley, T.; Boiani, S.; Leyland, R.; Galloway, A.; Andrews, S. et al.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

Enhanced susceptibility to citrobacter rodentium infection in microRNA-155-Deficient mice

Infection and Immunity
2013 | Journal article
EID:

2-s2.0-84874714511

Contributors: Clare, S.; John, V.; Walker, A.W.; Hill, J.L.; Abreu-Goodger, C.; Hale, C.; Goulding, D.; Lawley, T.D.; Mastroeni, P.; Frankel, G. et al.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

Identification of Male Gametogenesis Expressed Genes from the Scallop Nodipecten subnodosus by Suppressive Subtraction Hybridization and Pyrosequencing

PLoS ONE
2013 | Journal article
EID:

2-s2.0-84884182118

Contributors: Llera-Herrera, R.; García-Gasca, A.; Abreu-Goodger, C.; Huvet, A.; Ibarra, A.M.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

Kraken: A set of tools for quality control and analysis of high-throughput sequence data

Methods
2013 | Journal article
EID:

2-s2.0-84883492771

Contributors: Davis, M.P.A.; van Dongen, S.; Abreu-Goodger, C.; Bartonicek, N.; Enright, A.J.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

microRNA-22 Promotes Heart Failure through Coordinate Suppression of PPAR/ERR-Nuclear Hormone Receptor Transcription

PLoS ONE
2013 | Journal article
EID:

2-s2.0-84884681224

Contributors: Gurha, P.; Wang, T.; Larimore, A.H.; Sassi, Y.; Abreu-Goodger, C.; Ramirez, M.O.; Reddy, A.K.; Engelhardt, S.; Taffet, G.E.; Wehrens, X.H.T. et al.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

The RNAi machinery regulates growth and development in the filamentous fungus Trichoderma atroviride

Molecular Microbiology
2013 | Journal article
EID:

2-s2.0-84879504279

Contributors: Carreras-Villaseñor, N.; Esquivel-Naranjo, E.U.; Villalobos-Escobedo, J.M.; Abreu-Goodger, C.; Herrera-Estrella, A.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

Extent, causes, and consequences of small RNA expression variation in human adipose tissue

PLoS Genetics
2012 | Journal article
EID:

2-s2.0-84863641258

Contributors: Parts, L.; Hedman, Å.K.; Keildson, S.; Knights, A.J.; Abreu-Goodger, C.; van de Bunt, M.; Guerra-Assunção, J.A.; Bartonicek, N.; van Dongen, S.; Mägi, R. et al.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

Large-scale identification of microRNA targets in murine Dgcr8-deficient embryonic stem cell lines

PLoS ONE
2012 | Journal article
EID:

2-s2.0-84865100081

Contributors: Davis, M.P.A.; Abreu-Goodger, C.; van Dongen, S.; Lu, D.; Tate, P.H.; Bartonicek, N.; Kutter, C.; Liu, P.; Skarnes, W.C.; Enright, A.J. et al.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

MiR-124 acts through CoREST to control onset of Sema3A sensitivity in navigating retinal growth cones

Nature Neuroscience
2012 | Journal article
EID:

2-s2.0-84655170104

Contributors: Baudet, M.-L.; Zivraj, K.H.; Abreu-Goodger, C.; Muldal, A.; Armisen, J.; Blenkiron, C.; Goldstein, L.D.; Miska, E.A.; Holt, C.E.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

MiR-25 regulates Wwp2 and Fbxw7 and promotes reprogramming of mouse fibroblast cells to iPSCs

PLoS ONE
2012 | Journal article
EID:

2-s2.0-84865083977

Contributors: Lu, D.; Davis, M.P.A.; Abreu-Goodger, C.; Wang, W.; Campos, L.S.; Siede, J.; Vigorito, E.; Skarnes, W.C.; Dunham, I.; Enright, A.J. et al.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

Post-developmental microRNA expression is required for normal physiology, and regulates aging in parallel to insulin/IGF-1 signaling in C. elegans

RNA
2012 | Journal article
EID:

2-s2.0-84869853276

Contributors: Lehrbach, N.J.; Castro, C.; Murfitt, K.J.; Abreu-Goodger, C.; Griffin, J.L.; Miska, E.A.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

Targeted deletion of MicroRNA-22 promotes stress-induced cardiac dilation and contractile dysfunction

Circulation
2012 | Journal article
EID:

2-s2.0-84861858796

Contributors: Gurha, P.; Abreu-Goodger, C.; Wang, T.; Ramirez, M.O.; Drumond, A.L.; Van Dongen, S.; Chen, Y.; Bartonicek, N.; Enright, A.J.; Lee, B. et al.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

Using MCL to extract clusters from networks

Methods in Molecular Biology
2012 | Book
EID:

2-s2.0-84855896819

Contributors: Van Dongen, S.; Abreu-Goodger, C.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

Messenger RNA and microRNA profiling during early mouse EB formation

Gene Expression Patterns
2011 | Journal article
EID:

2-s2.0-79955936694

Contributors: Tripathi, R.; Saini, H.K.; Rad, R.; Abreu-Goodger, C.; Van Dongen, S.; Enright, A.J.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements

Nature
2011 | Journal article
EID:

2-s2.0-83055180736

Contributors: De Fazio, S.; Bartonicek, N.; Di Giacomo, M.; Abreu-Goodger, C.; Sankar, A.; Funaya, C.; Antony, C.; Moreira, P.N.; Enright, A.J.; O'carroll, D.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

Theoretical and empirical quality assessment of transcription factor-binding motifs

Nucleic Acids Research
2011 | Journal article
EID:

2-s2.0-79951570672

Contributors: Medina-Rivera, A.; Abreu-Goodger, C.; Thomas-Chollier, M.; Salgado, H.; Collado-Vides, J.; Van Helden, J.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

Combined agonist-antagonist genome-wide functional screening identifies broadly active antiviral microRNAs

Proceedings of the National Academy of Sciences of the United States of America
2010 | Journal article
EID:

2-s2.0-77956378342

Contributors: Santhakumar, D.; Forster, T.; Laqtom, N.N.; Fragkoudis, R.; Dickinson, P.; Abreu-Goodger, C.; Manakov, S.A.; Choudhury, N.R.; Griffiths, S.J.; Vermeulen, A. et al.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

Efficient inhibition of miR-155 function in vivo by peptide nucleic acids

Nucleic Acids Research
2010 | Journal article
EID:

2-s2.0-77955263389

Contributors: Fabani, M.M.; Abreu-Goodger, C.; Williams, D.; Lyons, P.A.; Torres, A.G.; Smith, K.G.C.; Enright, A.J.; Gait, M.J.; Vigorito, E.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

Malignant Germ Cell Tumors Display Common MicroRNA Profiles Resulting in Global Changes in Expression of Messenger RNA Targets

Cancer Research
2010 | Journal article
EID:

2-s2.0-77950839553

Contributors: Palmer, R.D.; Murray, M.J.; Saini, H.K.; Van Dongen, S.; Abreu-Goodger, C.; Muralidhar, B.; Pett, M.R.; Thornton, C.M.; Nicholson, J.C.; Enright, A.J. et al.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier

The miR-144/451 locus is required for erythroid homeostasis

Journal of Experimental Medicine
2010 | Journal article
EID:

2-s2.0-77954408884

Contributors: Rasmussen, K.D.; Simmini, S.; Abreu-Goodger, C.; Bartonicek, N.; Di Giacomo, M.; Bilbao-Cortes, D.; Horos, R.; Von Lindern, M.; Enright, A.J.; O'Carroll, D.
Source: Self-asserted source
Cei Abreu-Goodger via Scopus - Elsevier
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