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Environmental Genomics

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ResearcherID: I-4333-2016

Keywords

Population genomics, plant-microbe interactions and co-evolution

Countries

Germany

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Professional activities (1)

CIFAR: Toronto, Ontario, CA

2019-07-01 to present
Invited position
Source: check_circle
CIFAR via ORCID Member Portal

Funding (3)

Domestication-driven metaorganism evolution of wheat (A03)

2016-01-01 to present | Grant
German Research Foundation (Bonn, DE)
URL: https://grants.uberresearch.com/501100001659/284374035/Domestication-driven-metaorganism-evolution-of-wheat-A03
GRANT_NUMBER: 284374035
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via DimensionsWizard

Accounting for spatial heterogeneity of parameters in the sequentially Markov coalescent process

Source: Self-asserted source
Eva Holtgrewe Stukenbrock via DimensionsWizard

The role of recombination in rapid adaptive evolution of fungal plant pathogens: A comparative population genomics study

Source: Self-asserted source
Eva Holtgrewe Stukenbrock via DimensionsWizard

Works (41)

Toward an Investigation of Diversity and Cultivation of Rye (<i>Secale cereale</i> ssp. <i>cereale</i> L.) in Germany: Methodological Insights and First Results from Early Modern Plant Material

Agronomy
2021-11 | Journal article | Author
DOI: 10.3390/agronomy11122451
Contributors: Sofia Filatova; Benjamin Claaßen; Guillermo Torres; Ben Krause-Kyora; Eva Holtgrewe Stukenbrock; Wiebke Kirleis
Source: check_circle
Multidisciplinary Digital Publishing Institute

Interspecific Gene Exchange as a Driver of Adaptive Evolution in Fungi.

Annual review of microbiology
2018-06 | Journal article
DOI: 10.1146/annurev-micro-090817-062753
PMID: 29927707
Contributors: Feurtey A; Stukenbrock EH
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Genomewide signatures of selection in Epichloë reveal candidate genes for host specialization.

Molecular ecology
2018-04 | Journal article
DOI: 10.1111/mec.14585
PMID: 29633410
Contributors: Schirrmann MK; Zoller S; Croll D; Stukenbrock EH; Leuchtmann A; Fior S
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Fine-Scale Recombination Maps of Fungal Plant Pathogens Reveal Dynamic Recombination Landscapes and Intragenic Hotspots.

Genetics
2018-03 | Journal article
DOI: 10.1534/genetics.117.300502
PMID: 29263029
PMC: PMC5844332
Contributors: Stukenbrock EH; Dutheil JY
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Evolution and genome architecture in fungal plant pathogens.

Nature reviews. Microbiology
2017-12 | Journal article
DOI: 10.1038/nrmicro.2017.76
PMID: 28781365
Contributors: Möller M; Stukenbrock EH
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Evolution and genome architecture in fungal plant pathogens.

Nature reviews. Microbiology
2017-11 | Journal article
DOI: 10.1038/nrmicro.2017.143
PMID: 29123226
Contributors: Möller M; Stukenbrock EH
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Forward Genetics Approach Reveals Host Genotype-Dependent Importance of Accessory Chromosomes in the Fungal Wheat Pathogen Zymoseptoria tritici.

mBio
2017-11 | Journal article
DOI: 10.1128/mbio.01919-17
PMID: 29184021
PMC: PMC5705923
Contributors: Habig M; Quade J; Stukenbrock EH
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Rapid emergence of pathogens in agro-ecosystems: global threats to agricultural sustainability and food security.

Philosophical transactions of the Royal Society of London. Series B, Biological sciences
2016-12 | Journal article
DOI: 10.1098/rstb.2016.0026
PMID: 28080995
PMC: PMC5095548
Contributors: McDonald BA; Stukenbrock EH
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Life cycle specialization of filamentous pathogens - colonization and reproduction in plant tissues.

Current opinion in microbiology
2016-08 | Journal article
DOI: 10.1016/j.mib.2016.04.015
PMID: 27153045
Contributors: Haueisen J; Stukenbrock EH
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Hybridization speeds up the emergence and evolution of a new pathogen species.

Nature genetics
2016-02 | Journal article
DOI: 10.1038/ng.3494
PMID: 26813763
Contributors: Stukenbrock EH
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

The Role of Hybridization in the Evolution and Emergence of New Fungal Plant Pathogens.

Phytopathology
2016-02 | Journal article
DOI: 10.1094/phyto-08-15-0184-rvw
PMID: 26824768
Contributors: Stukenbrock EH
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Histone modifications rather than the novel regional centromeres of Zymoseptoria tritici distinguish core and accessory chromosomes.

Epigenetics & chromatin
2015 | Journal article
DOI: 10.1186/s13072-015-0033-5
PMID: 26430472
PMC: PMC4589918
Contributors: Schotanus K; Soyer JL; Connolly LR; Grandaubert J; Happel P; Smith KM; Freitag M; Stukenbrock EH
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Rapidly Evolving Genes Are Key Players in Host Specialization and Virulence of the Fungal Wheat Pathogen Zymoseptoria tritici (Mycosphaerella graminicola).

PLoS pathogens
2015-07 | Journal article
DOI: 10.1371/journal.ppat.1005055
PMID: 26225424
PMC: PMC4520584
Contributors: Poppe S; Dorsheimer L; Happel P; Stukenbrock EH
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

RNA-seq-Based Gene Annotation and Comparative Genomics of Four Fungal Grass Pathogens in the Genus Zymoseptoria Identify Novel Orphan Genes and Species-Specific Invasions of Transposable Elements.

G3 (Bethesda, Md.)
2015-07 | Journal article
DOI: 10.1534/g3.115.017731
PMID: 25917918
PMC: PMC4502367
Contributors: Grandaubert J; Bhattacharyya A; Stukenbrock EH
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Chromatin analyses of Zymoseptoria tritici: Methods for chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq).

Fungal genetics and biology : FG & B
2015-06 | Journal article
DOI: 10.1016/j.fgb.2015.03.006
PMID: 25857259
PMC: PMC4620941
Contributors: Soyer JL; Möller M; Schotanus K; Connolly LR; Galazka JM; Freitag M; Stukenbrock EH
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

MafFilter: a highly flexible and extensible multiple genome alignment files processor.

BMC genomics
2014 | Journal article
DOI: 10.1186/1471-2164-15-53
PMID: 24447531
PMC: PMC3904536
Contributors: Dutheil JY; Gaillard S; Stukenbrock EH
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Hitchhiking selection is driving intron gain in a pathogenic fungus.

Molecular biology and evolution
2014-07 | Journal article
DOI: 10.1093/molbev/msu123
PMID: 24710519
Contributors: Brunner PC; Torriani SF; Croll D; Stukenbrock EH; McDonald BA
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Expression profiling of the wheat pathogen Zymoseptoria tritici reveals genomic patterns of transcription and host-specific regulatory programs.

Genome biology and evolution
2014-06 | Journal article
DOI: 10.1093/gbe/evu101
PMID: 24920004
PMC: PMC4079195
Contributors: Kellner R; Bhattacharyya A; Poppe S; Hsu TY; Brem RB; Stukenbrock EH
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Evolution, selection and isolation: a genomic view of speciation in fungal plant pathogens.

The New phytologist
2013-09 | Journal article
DOI: 10.1111/nph.12374
PMID: 23782262
Contributors: Stukenbrock EH
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Coevolution and life cycle specialization of plant cell wall degrading enzymes in a hemibiotrophic pathogen.

Molecular biology and evolution
2013-06 | Journal article
DOI: 10.1093/molbev/mst041
PMID: 23515261
PMC: PMC3649673
Contributors: Brunner PC; Torriani SF; Croll D; Stukenbrock EH; McDonald BA
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

High levels of genetic and genotypic diversity in field populations of the barley pathogen Ramularia collo-cygni

European journal of plant pathology
2013-05 | Journal article
DOI: 10.1007/s10658-012-0137-8
OTHER-ID:

IND500644123
Contributors: Hjortshøj RL; Ravnshøj AR; Nyman M; Orabi J; Backes G; Pinnschmidt H; Havis N; Stougaard J; Stukenbrock EH
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Comparing fungal genomes: insight into functional and evolutionary processes.

Methods in molecular biology (Clifton, N.J.)
2012 | Journal article
DOI: 10.1007/978-1-61779-501-5_33
PMID: 22183676
Contributors: Stukenbrock EH; Dutheil JY
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Zymoseptoria ardabiliae and Z. pseudotritici, two progenitor species of the septoria tritici leaf blotch fungus Z. tritici (synonym: Mycosphaerella graminicola).

Mycologia
2012 | Journal article
DOI: 10.3852/11-374
PMID: 22675045
Contributors: Stukenbrock EH; Quaedvlieg W; Javan-Nikhah M; Zala M; Crous PW; McDonald BA
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

A population genomics perspective on the emergence and adaptation of new plant pathogens in agro-ecosystems.

PLoS pathogens
2012-09 | Journal article
DOI: 10.1371/journal.ppat.1002893
PMID: 23028308
PMC: PMC3460620
Contributors: Stukenbrock EH; Bataillon T
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Fusion of two divergent fungal individuals led to the recent emergence of a unique widespread pathogen species.

Proceedings of the National Academy of Sciences of the United States of America
2012-07 | Journal article
DOI: 10.1073/pnas.1201403109
PMID: 22711811
PMC: PMC3390827
Contributors: Stukenbrock EH; Christiansen FB; Hansen TT; Dutheil JY; Schierup MH
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Quantitative variation in effector activity of ToxA isoforms from Stagonospora nodorum and Pyrenophora tritici-repentis.

Molecular plant-microbe interactions : MPMI
2012-04 | Journal article
DOI: 10.1094/mpmi-10-11-0273
PMID: 22250581
Contributors: Tan KC; Ferguson-Hunt M; Rybak K; Waters OD; Stanley WA; Bond CS; Stukenbrock EH; Friesen TL; Faris JD; McDonald BA et al.
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Evidence for extensive recent intron transposition in closely related fungi.

Current biology : CB
2011-12 | Journal article
DOI: 10.1016/j.cub.2011.10.041
PMID: 22100062
Contributors: Torriani SF; Stukenbrock EH; Brunner PC; McDonald BA; Croll D
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

The making of a new pathogen: insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species.

Genome research
2011-12 | Journal article
DOI: 10.1101/gr.118851.110
PMID: 21994252
PMC: PMC3227104
Contributors: Stukenbrock EH; Bataillon T; Dutheil JY; Hansen TT; Li R; Zala M; McDonald BA; Wang J; Wang J; Schierup MH
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Pathogenicity determinants in smut fungi revealed by genome comparison.

Science (New York, N.Y.)
2010-12 | Journal article
DOI: 10.1126/science.1195330
PMID: 21148393
Contributors: Schirawski J; Mannhaupt G; Münch K; Brefort T; Schipper K; Doehlemann G; Di Stasio M; Rössel N; Mendoza-Mendoza A; Pester D et al.
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Whole-genome and chromosome evolution associated with host adaptation and speciation of the wheat pathogen Mycosphaerella graminicola.

PLoS genetics
2010-12 | Journal article
DOI: 10.1371/journal.pgen.1001189
PMID: 21203495
PMC: PMC3009667
Contributors: Stukenbrock EH; Jørgensen FG; Zala M; Hansen TT; McDonald BA; Schierup MH
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Population genetics of fungal and oomycete effectors involved in gene-for-gene interactions.

Molecular plant-microbe interactions : MPMI
2009-04 | Journal article
DOI: 10.1094/mpmi-22-4-0371
PMID: 19271952
Contributors: Stukenbrock EH; McDonald BA
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

The origins of plant pathogens in agro-ecosystems.

Annual review of phytopathology
2008 | Journal article
DOI: 10.1146/annurev.phyto.010708.154114
PMID: 18680424
Contributors: Stukenbrock EH; McDonald BA
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Geographical variation and positive diversifying selection in the host-specific toxin SnToxA

Molecular plant pathology
2007-05 | Journal article
DOI: 10.1111/j.1364-3703.2007.00396.x
PMID: 20507502
Contributors: STUKENBROCK EH; MCDONALD BA
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Origin and domestication of the fungal wheat pathogen Mycosphaerella graminicola via sympatric speciation.

Molecular biology and evolution
2007-02 | Journal article
DOI: 10.1093/molbev/msl169
PMID: 17095534
Contributors: Stukenbrock EH; Banke S; Javan-Nikkhah M; McDonald BA
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Global migration patterns in the fungal wheat pathogen Phaeosphaeria nodorum.

Molecular ecology
2006-09 | Journal article
DOI: 10.1111/j.1365-294x.2006.02986.x
PMID: 16911209
Contributors: Stukenbrock EH; Banke S; McDonald BA
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Emergence of a new disease as a result of interspecific virulence gene transfer.

Nature genetics
2006-08 | Journal article
DOI: 10.1038/ng1839
PMID: 16832356
Contributors: Friesen TL; Stukenbrock EH; Liu Z; Meinhardt S; Ling H; Faris JD; Rasmussen JB; Solomon PS; McDonald BA; Oliver RP
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Isolation and characterization of EST-derived microsatellite loci from the fungal wheat pathogen Phaeosphaeria nodorum.

Molecular ecology notes
2005-12 | Journal article
DOI: 10.1111/j.1471-8286.2005.01120.x
OTHER-ID:

IND43777993
Contributors: Stukenbrock EH; Banke S; Zala M; McDonald BA; Oliver RP
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Distribution of dominant arbuscular mycorrhizal fungi among five plant species in undisturbed vegetation of a coastal grassland.

Mycorrhiza
2005-11 | Journal article
DOI: 10.1007/s00572-005-0357-2
PMID: 15809870
Contributors: Stukenbrock EH; Rosendahl S
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Clonal diversity and population genetic structure of arbuscular mycorrhizal fungi (Glomus spp.) studied by multilocus genotyping of single spores.

Molecular ecology
2005-03 | Journal article
DOI: 10.1111/j.1365-294x.2005.02453.x
PMID: 15723666
Contributors: Stukenbrock EH; Rosendahl S
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Development and amplification of multiple co-dominant genetic markers from single spores of arbuscular mycorrhizal fungi by nested multiplex PCR.

Fungal genetics and biology : FG & B
2005-01 | Journal article
DOI: 10.1016/j.fgb.2004.10.004
PMID: 15588998
Contributors: Stukenbrock EH; Rosendahl S
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Community structure of arbuscular mycorrhizal fungi in undisturbed vegetation revealed by analyses of LSU rDNA sequences.

Molecular ecology
2004-10 | Journal article
DOI: 10.1111/j.1365-294x.2004.02295.x
PMID: 15367130
Contributors: Rosendahl S; Stukenbrock EH
Source: Self-asserted source
Eva Holtgrewe Stukenbrock via Europe PubMed Central

Peer review (1 review for 1 publication/grant)

Review activity for Nature communications (1)
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