Personal information

United States

Activities

Funding (1)

Therapeutic targets and diagnostics in Alzheimer's disease

2020-09-01 to 2024-08-31 | Grant
BrightFocus Foundation (Clarksburg, US)
GRANT_NUMBER:

A2020161S

Source: check_circle
BrightFocus Foundation - ProposalCentral

Works (50 of 56)

Items per page:
Page 1 of 2

RNApysoforms: fast rendering interactive visualization of RNA isoform structure and expression in Python

Bioinformatics Advances
2024-12-26 | Journal article
Contributors: Bernardo Aguzzoli Heberle; Madeline L Page; Emil K Gustavsson; Mina Ryten; Mark T W Ebbert; Nurcan Tunçbağ
Source: check_circle
Crossref

RNApysoforms: Fast rendering interactive visualization of RNA isoform structure and expression in Python

2024-11-08 | Preprint
Contributors: Bernardo Aguzzoli Heberle; Madeline L. Page; Emil K. Gustavsson; Mina Ryten; Mark T. W. Ebbert
Source: check_circle
Crossref

Systematic review and meta-analysis of bulk RNAseq studies in human Alzheimer’s disease brain tissue

2024-11-08 | Preprint
Contributors: Bernardo Aguzzoli Heberle; Kristin L. Fox; Lucas Lobraico Libermann; Sophia Ronchetti Martins Xavier; Guilherme Tarnowski Dallarosa; Rhaná Carolina Santos; David W. Fardo; Thiago Wendt Viola; Mark T. W. Ebbert
Source: check_circle
Crossref

Surveying the landscape of RNA isoform diversity and expression across 9 GTEx tissues using long-read sequencing data

2024-02-14 | Preprint
Contributors: Madeline L. Page; Bernardo Aguzzoli Heberle; J. Anthony Brandon; Mark E. Wadsworth; Lacey A. Gordon; Kayla A. Nations; Mark T. W. Ebbert
Source: check_circle
Crossref

Genome-wide association study of multiple neuropathology endophenotypes identifies novel risk loci and provides insights into known Alzheimer’s risk loci

2022-12-14 | Preprint
Contributors: Lincoln M.P. Shade; Yuriko Katsumata; Steven A. Claas; Mark T. W. Ebbert; Erin L. Abner; Timothy J. Hohman; Shubhabrata Mukherjee; Kwangsik Nho; Andrew J. Saykin; David A. Bennett et al.
Source: check_circle
Crossref

Systematic analysis of dark and camouflaged genes: disease-relevant genes hiding in plain sight

2019-01-09 | Other
Contributors: Mark T. W. Ebbert; Tanner D. Jensen; Karen Jansen-West; Jonathon P. Sens; Joseph S. Reddy; Perry G. Ridge; John S. K. Kauwe; Veronique Belzil; Luc Pregent; Minerva M. Carrasquillo et al.
Source: check_circle
Crossref

An Epigenetic Spin to ALS and FTD

RNA Metabolism in Neurodegenerative Diseases
2018 | Other
Part of ISBN: 9783319896885
Part of ISSN: 2190-5215
Contributors: Mark T. W. Ebbert; Rebecca J. Lank; Veronique V. Belzil
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Common DNA Variants Accurately Rank an Individual of Extreme Height

International Journal of Genomics
2018-09-04 | Journal article
Part of ISSN: 2314-436X
Contributors: Corinne E. Sexton; Mark T. W. Ebbert; Ryan H. Miller; Meganne Ferrel; Jo Ann T. Tschanz; Christopher D. Corcoran; Alzheimer’s Disease Neuroimaging Initiative; Perry G. Ridge; John S. K. Kauwe
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Microglial translational profiling reveals a convergent APOE pathway from aging, amyloid, and tau

Journal of Experimental Medicine
2018-09-03 | Journal article
Contributors: Silvia S. Kang; Mark T.W. Ebbert; Kelsey E. Baker; Casey Cook; Xuewei Wang; Jonathon P. Sens; Jeanne-Pierre Kocher; Leonard Petrucelli; John D. Fryer
Source: check_circle
Crossref

Long-read sequencing across the C9orf72 ‘GGGGCC’ repeat expansion: implications for clinical use and genetic discovery efforts in human disease

Molecular Neurodegeneration
2018-08 | Journal article
Part of ISSN: 1750-1326
Contributors: Mark T. W. Ebbert; Stefan L. Farrugia; Jonathon P. Sens; Karen Jansen-West; Tania F. Gendron; Mercedes Prudencio; Ian J. McLaughlin; Brett Bowman; Matthew Seetin; Mariely DeJesus-Hernandez et al.
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Poly(GR) impairs protein translation and stress granule dynamics in C9orf72-associated frontotemporal dementia and amyotrophic lateral sclerosis

Nature Medicine
2018-08 | Journal article
Contributors: Yong-Jie Zhang; Tania F. Gendron; Mark T. W. Ebbert; Aliesha D. O’Raw; Mei Yue; Karen Jansen-West; Xu Zhang; Mercedes Prudencio; Jeannie Chew; Casey N. Cook et al.
Source: check_circle
Crossref

Corticobasal degeneration with TDP-43 pathology presenting with progressive supranuclear palsy syndrome: a distinct clinicopathologic subtype

Acta Neuropathologica
2018-06 | Journal article
Part of ISSN: 0001-6322
Contributors: Shunsuke Koga; Naomi Kouri; Ronald L. Walton; Mark T. W. Ebbert; Keith A. Josephs; Irene Litvan; Neill Graff-Radford; J. Eric Ahlskog; Ryan J. Uitti; Jay A. van Gerpen et al.
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Long-read sequencing across theC9orf72‘GGGGCC’ repeat expansion: implications for clinical use and genetic discovery efforts in human disease

2018-02-10 | Preprint
Contributors: Mark T. W. Ebbert; Stefan Farrugia; Jonathon Sens; Karen Jansen-West; Tania F. Gendron; Mercedes Prudencio; lan J. McLaughlin; Brett Bowman; Matthew Seetin; Mariely DeJesus-Hernandez et al.
Source: check_circle
Crossref

Linkage, whole genome sequence, and biological data implicate variants in RAB10 in Alzheimer’s disease resilience

Genome Medicine
2017-11 | Journal article
Part of ISSN: 1756-994X
Contributors: Perry G. Ridge; for the Alzheimer’s Disease Neuroimaging Initiative; Celeste M. Karch; Simon Hsu; Ivan Arano; Craig C. Teerlink; Mark T. W. Ebbert; Josue D. Gonzalez Murcia; James M. Farnham; Anna R. Damato et al.
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Conserved DNA methylation combined with differential frontal cortex and cerebellar expression distinguishes C9orf72-associated and sporadic ALS, and implicates SERPINA1 in disease

Acta Neuropathologica
2017-08 | Journal article
Part of ISSN: 0001-6322
Contributors: Mark T. W. Ebbert; Christian A. Ross; Luc J. Pregent; Rebecca J. Lank; Cheng Zhang; Rebecca B. Katzman; Karen Jansen-West; Yuping Song; Edroaldo Lummertz da Rocha; Carla Palmucci et al.
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Repetitive element transcripts are elevated in the brain of C9orf72 ALS/FTLD patients

Human Molecular Genetics
2017-06 | Journal article
Part of ISSN: 0964-6906
Contributors: Mercedes Prudencio; Patrick K. Gonzales; Casey N. Cook; Tania F. Gendron; Lillian M. Daughrity; Yuping Song; Mark T.W. Ebbert; Marka van Blitterswijk; Yong-Jie Zhang; Karen Jansen-West et al.
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Evaluation of the Abbott RealTi m e HCV genotype II plus RUO (PLUS) assay with reference to core and NS5B sequencing

Journal of Clinical Virology
2017-05 | Journal article
Part of ISSN: 1386-6532
Contributors: Melanie A. Mallory; Danijela Lucic; Mark T.W. Ebbert; Gavin A. Cloherty; Dan Toolsie; David R. Hillyard
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

A novel approach for multi-SNP GWAS and its application in Alzheimer’s disease

BMC Bioinformatics
2016-07 | Journal article
Part of ISSN: 1471-2105
Contributors: Paul M. Bodily; the Alzheimer’s Disease Neuroimaging Initiative; M. Stanley Fujimoto; Justin T. Page; Mark J. Clement; Mark T. W. Ebbert; Perry G. Ridge
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

ASSESSMENT OF THE GENETIC VARIANCE OF LATE-ONSET ALZHEIMER’S DISEASE

Alzheimer's & Dementia
2016-07 | Journal article
Part of ISSN: 1552-5260
Contributors: Perry G. Ridge; Mark Ebbert; Kaitlyn Hoyt; Kevin L. Boehme; Shubhabrata Mukherjee; Paul K. Crane; Jonathan L. Haines; Richard Mayeux; Lindsay A. Farrer; Margaret A. Pericak-Vance et al.
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Evaluating the necessity of PCR duplicate removal from next-generation sequencing data and a comparison of approaches

BMC Bioinformatics
2016-07 | Journal article
Part of ISSN: 1471-2105
Contributors: Mark T. W. Ebbert; for the Alzheimer’s Disease Neuroimaging Initiative; Mark E. Wadsworth; Lyndsay A. Staley; Kaitlyn L. Hoyt; Brandon Pickett; Justin Miller; John Duce; John S. K. Kauwe; Perry G. Ridge
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Genome-wide association study of prolactin levels in blood plasma and cerebrospinal fluid

BMC Genomics
2016-06 | Journal article
Part of ISSN: 1471-2164
Contributors: Lyndsay A. Staley; for the Alzheimer’s Disease Neuroimaging Initiative; Mark T. W. Ebbert; Sheradyn Parker; Matthew Bailey; Perry G. Ridge; Alison M. Goate; John S. K. Kauwe
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Presenilin E318G variant and Alzheimer’s disease risk: the Cache County study

BMC Genomics
2016-06 | Journal article
Part of ISSN: 1471-2164
Contributors: Ariel A. Hippen; Mark T. W. Ebbert; Maria C. Norton; JoAnn T. Tschanz; Ronald G. Munger; Christopher D. Corcoran; John S. K. Kauwe
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Variants in ACPP are associated with cerebrospinal fluid Prostatic Acid Phosphatase levels

BMC Genomics
2016-06 | Journal article
Part of ISSN: 1471-2164
Contributors: Lyndsay A. Staley; for the Alzheimer’s Disease Neuroimaging Initiative; Mark T. W. Ebbert; Daniel Bunker; Matthew Bailey; Perry G. Ridge; Alison M. Goate; John S. K. Kauwe
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Variants in CCL16 are associated with blood plasma and cerebrospinal fluid CCL16 protein levels

BMC Genomics
2016-06 | Journal article
Part of ISSN: 1471-2164
Contributors: Mark T. W. Ebbert; for the Alzheimer’s Disease Neuroimaging Initiative; Lyndsay A. Staley; Joshua Parker; Sheradyn Parker; Matthew Bailey; Perry G. Ridge; Alison M. Goate; John S. K. Kauwe
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

SA-SSR: a suffix array-based algorithm for exhaustive and efficient SSR discovery in large genetic sequences: Table 1.

Bioinformatics
2016-05-11 | Journal article
Part of ISSN: 1367-4803
Contributors: B. D. Pickett; S. M. Karlinsey; C. E. Penrod; M. J. Cormier; M. T. W. Ebbert; D. K. Shiozawa; C. J. Whipple; P. G. Ridge
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Liver kinase B1 inhibits the expression of inflammation-related genes postcontraction in skeletal muscle

Journal of Applied Physiology
2016-04 | Journal article
Part of ISSN: 8750-7587
Contributors: Ting Chen; Timothy M. Moore; Mark T. W. Ebbert; Natalie L. McVey; Steven R. Madsen; David M. Hallowell; Alexander M. Harris; Robin E. Char; Ryan P. Mackay; Chad R. Hancock et al.
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Bridging the Gap between Statistical and Biological Epistasis in Alzheimer’s Disease

BioMed Research International
2015 | Journal article
Part of ISSN: 2314-6133
Contributors: Mark T. W. Ebbert; Perry G. Ridge; John S. K. Kauwe
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Interaction between variants in CLU and MS4A4E modulates Alzheimer's disease risk

2015-10-13 | Report
Source: check_circle
Crossref

Population-based analysis of cholesteryl ester transfer protein identifies association between I405V and cognitive decline: the Cache County Study

Neurobiology of Aging
2015-01 | Journal article
Part of ISSN: 0197-4580
Contributors: Caitlin Lythgoe; Ammon Perkes; Michael Peterson; Cameron Schmutz; Maegan Leary; Mark T.W. Ebbert; Perry G. Ridge; Maria C. Norton; JoAnn T. Tschanz; Ronald G. Munger et al.
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Variant Tool Chest: an improved tool to analyze and manipulate variant call format (VCF) files

BMC Bioinformatics
2014 | Journal article
Part of ISSN: 1471-2105
Contributors: Mark TW Ebbert; Mark E Wadsworth; Kevin L Boehme; Kaitlyn L Hoyt; Aaron R Sharp; Brendan D O'Fallon; John SK Kauwe; Perry G Ridge
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Population-based Analysis of Alzheimer’s Disease Risk Alleles Implicates Genetic Interactions

Biological Psychiatry
2014-05 | Journal article
Part of ISSN: 0006-3223
Contributors: Mark T.W. Ebbert; Perry G. Ridge; Andrew R. Wilson; Aaron R. Sharp; Matthew Bailey; Maria C. Norton; JoAnn T. Tschanz; Ronald G. Munger; Christopher D. Corcoran; John S.K. Kauwe
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Intrinsic Subtypes from PAM50 Gene Expression Assay in a Population-Based Breast Cancer Cohort: Differences by Age, Race, and Tumor Characteristics

Cancer Epidemiology Biomarkers & Prevention
2014-02 | Journal article
Part of ISSN: 1055-9965
Contributors: C. Sweeney; P. S. Bernard; R. E. Factor; M. L. Kwan; L. A. Habel; C. P. Quesenberry; K. Shakespear; E. K. Weltzien; I. J. Stijleman; C. A. Davis et al.
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Genetic Discoveries in AD Using CSF Amyloid and Tau

Current Genetic Medicine Reports
2014-01 | Journal article
Part of ISSN: 2167-4876
Contributors: Carlos Cruchaga; Mark T. W. Ebbert; John S. K. Kauwe
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Assessment of TREM2 rs75932628 association with Alzheimer's disease in a population-based sample: the Cache County Study

Neurobiology of Aging
2013 | Journal article
Part of ISSN: 0197-4580
Contributors: Josue D. Gonzalez Murcia; Cameron Schmutz; Caitlin Munger; Ammon Perkes; Aaron Gustin; Michael Peterson; Mark T.W. Ebbert; Maria C. Norton; JoAnn T. Tschanz; Ronald G. Munger et al.
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Genetics of Alzheimer’s Disease

BioMed Research International
2013 | Journal article
Part of ISSN: 2314-6133
Contributors: Perry G. Ridge; Mark T. W. Ebbert; John S. K. Kauwe
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Application of a new informatics tool for contamination screening in the HIV sequencing laboratory

Journal of Clinical Virology
2013-07 | Journal article
Part of ISSN: 1386-6532
Contributors: Mark T.W. Ebbert; Melanie A. Mallory; Andrew R. Wilson; Shane K. Dooley; David R. Hillyard
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Assessment of TREM2 R47H in a population-based sample: The Cache County Study

Alzheimer's & Dementia
2013-07 | Journal article
Part of ISSN: 1552-5260
Contributors: Josue Gonzalez; Josue Gonzalez; Cameron Schmutz; John Kauwe; Caitlin Munger; Ammon Perkes; Aaron Gustin; Mark Ebbert; Maria Norton; JoAnn Tschanz et al.
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Population-based analysis of late-onset Alzheimer's disease risk alleles identifies candidate gene-gene interactions

Alzheimer's & Dementia
2013-07 | Journal article
Part of ISSN: 1552-5260
Contributors: Mark Ebbert; Perry Ridge; Andrew Wilson; Aaron Sharp; Matthew Bailey; Maria Norton; JoAnn Tschanz; Ronald Munger; Christopher Corcoran; John Kauwe
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

PAM50 proliferation score as a predictor of weekly paclitaxel benefit in breast cancer

Breast Cancer Research and Treatment
2013-02 | Journal article
Part of ISSN: 0167-6806
Contributors: Miguel Martín; Aleix Prat; Álvaro Rodríguez-Lescure; Rosalía Caballero; Mark T. W. Ebbert; Blanca Munárriz; Manuel Ruiz-Borrego; Roy R. L. Bastien; Carmen Crespo; Carole Davis et al.
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

A phase II study of UCN-01 in combination with irinotecan in patients with metastatic triple negative breast cancer

Breast Cancer Research and Treatment
2012 | Journal article
Part of ISSN: 0167-6806
Contributors: Cynthia X. Ma; Matthew J. C. Ellis; Gina R. Petroni; Zhanfang Guo; Shi-rong Cai; Christine E. Ryan; A. Craig Lockhart; Michael J. Naughton; Timothy J. Pluard; Christiana M. Brenin et al.
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

PAM50 Breast Cancer Subtyping by RT-qPCR and Concordance with Standard Clinical Molecular Markers

BMC Medical Genomics
2012-10-04 | Journal article
Part of ISSN: 1755-8794
Contributors: Roy RL Bastien; Álvaro Rodríguez-Lescure; Mark TW Ebbert; Aleix Prat; Blanca Munárriz; Leslie Rowe; Patricia Miller; Manuel Ruiz-Borrego; Daniel Anderson; Bradley Lyons et al.
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Abstract 1670: Molecular subtypes from PAM50 in a breast cancer cohort: differences by patient characteristic, reproducibility

Cancer Research
2012-04 | Journal article
Part of ISSN: 0008-5472
Contributors: Carol Sweeney; Philip S. Bernard; Rachel Factor; Kaylynn Shakespear; Marilyn L. Kwan; Laurel A. Habel; Inge J. Stijleman; Carole A. Davis; Mark Ebbert; Lawrence H. Kushi et al.
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Agreement in Risk Prediction Between the 21-Gene Recurrence Score Assay (Oncotype DX(R)) and the PAM50 Breast Cancer Intrinsic Classifier  in Early-Stage Estrogen Receptor-Positive Breast Cancer

The Oncologist
2012-03 | Journal article
Part of ISSN: 1083-7159
Contributors: C. M. Kelly; P. S. Bernard; S. Krishnamurthy; B. Wang; M. T. W. Ebbert; R. R. L. Bastien; K. M. Boucher; E. Young; T. Iwamoto; L. Pusztai
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Responsiveness of Intrinsic Subtypes to Adjuvant Anthracycline Substitution in the NCIC.CTG MA.5 Randomized Trial

Clinical Cancer Research
2012-02 | Journal article
Part of ISSN: 1078-0432
Contributors: M. C. U. Cheang; K. D. Voduc; D. Tu; S. Jiang; S. Leung; S. K. Chia; L. E. Shepherd; M. N. Levine; K. I. Pritchard; S. Davies et al.
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

TRIM29 Functions as a Tumor Suppressor in Nontumorigenic Breast Cells and Invasive ER+ Breast Cancer

The American Journal of Pathology
2012-02 | Journal article
Part of ISSN: 0002-9440
Contributors: Jin Liu; Bryan Welm; Ken M. Boucher; Mark T.W. Ebbert; Philip S. Bernard
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Characterization of uncertainty in the classification of multivariate assays: application to PAM50 centroid-based genomic predictors for breast cancer treatment plans

Journal of Clinical Bioinformatics
2011 | Journal article
Part of ISSN: 2043-9113
Contributors: Mark T W Ebbert; Roy R L Bastien; Kenneth M Boucher; Miguel Martin; Eva Carrasco; Rosalia Caballero; Inge J Stijleman; Philip S Bernard; Julio C Facelli
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

P1-06-04: PAM50 Proliferation Index Predicts Response to Weekly Adjuvant Paclitaxel in Node-Positive Operable Breast Cancer.

Cancer Research
2011 | Journal article
Part of ISSN: 0008-5472
Contributors: M Martín; Á Rodríguez-Lescure; IJ Stijleman; B Munárriz; M Ruíz-Borrego; C Davis; C Crespo; CA Rodríguez; MTW Ebbert; I Álvarez et al.
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Tumor grafts derived from women with breast cancer authentically reflect tumor pathology, growth, metastasis and disease outcomes

Nature Medicine
2011-10 | Journal article
Part of ISSN: 1078-8956
Contributors: Yoko S DeRose; Guoying Wang; Yi-Chun Lin; Philip S Bernard; Saundra S Buys; Mark T W Ebbert; Rachel Factor; Cindy Matsen; Brett A Milash; Edward Nelson et al.
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

Determining agreement between immunohistochemistry and RT-qPCR for standard biomarkers in breast cancer: Validation on GEICAM 9906 clinical trial.

Journal of Clinical Oncology
2011-05 | Journal article
Part of ISSN: 0732-183X
Contributors: P. S. Bernard; C. Davis; B. Munarriz; I. J. Stijleman; M. Ruiz-Borrego; M. T. W. Ebbert; A. Rodriguez-Lescure; R. R. L. Bastien; C. Crespo; C. M. Perou et al.
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search

PAM50 breast cancer intrinsic classifier: Clinical validation of a multianalyte laboratory developed test.

Journal of Clinical Oncology
2011-05 | Journal article
Part of ISSN: 0732-183X
Contributors: M. T. W. Ebbert; R. R. L. Bastien; L. R. Rowe; P. A. Miller; D. Anderson; K. M. Boucher; L. M. Pappas; C. Fauron; B. W. Lyons; T. Dowell et al.
Source: Self-asserted source
Mark Ebbert via Crossref Metadata Search
Items per page:
Page 1 of 2

Peer review (9 reviews for 6 publications/grants)

Review activity for F1000Research. (1)
Review activity for Genome biology. (3)
Review activity for Genome medicine. (1)
Review activity for Molecular neurodegeneration (1)
Review activity for Nature communications (2)
Review activity for Nature genetics. (1)