Personal information

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Verified email domains

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Keywords

RNA, RNA modifications, pre-mRNA splicing, CLIP

Countries

United Kingdom

Activities

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Employment (2)

King's College London: London, GB

2023-09 to present | Postdoc (RNP Networks Lab)
Employment
Source: Self-asserted source
Charlotte Capitanchik

Okinawa Institute of Science and Technology Graduate University: Onna Son, JP

2022-07 to 2023-07 | Postdoc (Luscombe Unit)
Employment
Source: Self-asserted source
Charlotte Capitanchik

Education and qualifications (3)

The Francis Crick Institute: London, London, GB

2017-09 to 2022-04 | PhD in Biosciences
Education
Source: Self-asserted source
Charlotte Capitanchik

University of Edinburgh: Edinburgh, Edinburgh, GB

2016-09 to 2017-08 | MSc Bioinformatics
Education
Source: Self-asserted source
Charlotte Capitanchik

University of Edinburgh: Edinburgh, Edinburgh, GB

2012-09 to 2016-05 | BSc Biological Sciences with hons in Molecular Genetics
Education
Source: Self-asserted source
Charlotte Capitanchik

Works (12)

From computational models of the splicing code to regulatory mechanisms and therapeutic implications

Nature Reviews Genetics
2025-03 | Journal article
DOI: 10.1038/s41576-024-00774-2
Contributors: Charlotte Capitanchik; Oscar G. Wilkins; Nils Wagner; Julien Gagneur; Jernej Ule
Source: check_circle
Crossref

PRMT activity promotes global 3' UTR shortening in proliferating cells

2025-03-10 | Preprint
DOI: 10.1101/2025.03.06.641848
Contributors: Llywelyn Griffith; Charlotte Capitanchik; Shaun Moore; Anca Farcas; Mags Gwynne; Martina Pedna; D. Marc Jones; Anob M. Chakrabarti; Dimitris Lagos; Jelena Urosevic et al.
Source: check_circle
Crossref

Flow: a web platform and open database to analyse, store, curate and share bioinformatics data at scale

2023-08-29 | Preprint
DOI: 10.1101/2023.08.22.544179
Contributors: Charlotte Capitanchik; Sam Ireland; Alex Harston; Chris Cheshire; D. Marc Jones; Flora C.Y. Lee; Igor Ruiz de los Mozos; Ira A. Iosub; Klara Kuret; Rupert Faraway et al.
Source: check_circle
Crossref

clipplotr—a comparative visualization and analysis tool for CLIP data

RNA
2023-06 | Journal article
DOI: 10.1261/rna.079326.122
Contributors: Anob M. Chakrabarti; Charlotte Capitanchik; Jernej Ule; Nicholas M. Luscombe
Source: check_circle
Crossref

m6A-ELISA, a simple method for quantifyingN6-methyladenosine from mRNA populations

RNA
2023-05 | Journal article
DOI: 10.1261/rna.079554.122
Contributors: Imke Ensinck; Theodora Sideri; Miha Modic; Charlotte Capitanchik; Claudia Vivori; Patrick Toolan-Kerr; Folkert J. van Werven
Source: check_circle
Crossref

Identification of RNA helicases with unwinding activity on angiogenin-processed tRNAs.

Nucleic acids research
2023-02-01 | Journal article
DOI: 10.1093/nar/gkad033
PMID: 36718960
PMC: PMC9943664
Contributors: Drino A; König L; Capitanchik C; Sanadgol N; Janisiw E; Rappol T; Elisa Vilardo; Matthias R. Schaefer
Source: Self-asserted source
Charlotte Capitanchik

N6-methyladenosine (m6A) reader Pho92 is recruited co-transcriptionally and couples translation to mRNA decay to promote meiotic fitness in yeast

eLife
2022-11-24 | Journal article
DOI: 10.7554/eLife.84034
Contributors: Radhika A Varier; Theodora Sideri; Charlotte Capitanchik; Zornitsa Manova; Enrica Calvani; Alice Rossi; Raghu R Edupuganti; Imke Ensinck; Vincent WC Chan; Harshil Patel et al.
Source: check_circle
Crossref

Ultraplex: A rapid, flexible, all-in-one fastq demultiplexer [version 1; peer review: 2 approved]

2021-06-07 | Journal article
DOI: 10.12688/wellcomeopenres.16791.1
Part of ISSN: 2398-502X
Contributors: Oscar G Wilkins; Charlotte Capitanchik; Nicholas M. Luscombe; Jernej Ule
Source: check_circle
Wellcome Open Research
grade
Preferred source (of 2)‎

How Do You Identify m6 A Methylation in Transcriptomes at High Resolution? A Comparison of Recent Datasets.

Frontiers in genetics
2020-05 | Journal article
DOI: 10.3389/fgene.2020.00398
PMID: 32508872
PMC: PMC7251061
Contributors: Capitanchik C; Toolan-Kerr P; Luscombe NM; Ule J
Source: Self-asserted source
Charlotte Capitanchik via Europe PubMed Central

PsiCLIP reveals dynamic RNA binding by DEAH-box helicases before and after exon ligation

2020-03-15 | Preprint
DOI: 10.1101/2020.03.15.992701
Contributors: Lisa M. Strittmatter; Charlotte Capitanchik; Andrew J. Newman; Martina Hallegger; Christine M. Norman; Sebastian M. Fica; Chris Oubridge; Nicholas M. Luscombe; Jernej Ule; Kiyoshi Nagai
Source: check_circle
Crossref

RNA modifications detection by comparative Nanopore direct RNA sequencing

2019-11-15 | Other
DOI: 10.1101/843136
Contributors: Adrien Leger; Paulo P. Amaral; Luca Pandolfini; Charlotte Capitanchik; Federica Capraro; Isaia Barbieri; Valentina Migliori; Nicholas M. Luscombe; Anton J Enright; Konstantinos Tzelepis et al.
Source: check_circle
Crossref

Analysis of RNA-Seq datasets reveals enrichment of tissue-specific splice variants for nuclear envelope proteins.

Nucleus (Austin, Tex.)
2018-06 | Journal article
DOI: 10.1080/19491034.2018.1469351
PMID: 29912636
Contributors: Capitanchik C; Dixon C; Swanson SK; Florens L; Kerr ARW; Schirmer EC
Source: Self-asserted source
Charlotte Capitanchik via Europe PubMed Central
grade
Preferred source (of 2)‎

Peer review (2 reviews for 2 publications/grants)

Review activity for EMBO reports. (1)
Review activity for Review Commons (1)
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