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Employment (3)

University of Arkansas Fayetteville: Fayetteville, AR, US

2021-08 to present | Associate Professor (Chemistry and Biochemistry)
Employment
Source: Self-asserted source
Mahmoud Moradi

University of Arkansas Fayetteville: Fayetteville, AR, US

2015-08 to 2021-07 | Assistant Professor (Chemistry and Biochemistry)
Employment
Source: Self-asserted source
Mahmoud Moradi

University of Illinois at Urbana-Champaign: Urbana, IL, US

2011-06 to 2015-08 | Postdoc (Beckman Institute)
Employment
Source: Self-asserted source
Mahmoud Moradi

Education and qualifications (3)

Sharif University of Technology: Tehran, Tehran, IR

2002 to present | MSc (Physics)
Education
Source: Self-asserted source
Mahmoud Moradi

North Carolina State University: Raleigh, NC, US

2005-08 to 2011-05 | PhD (Physics)
Education
Source: Self-asserted source
Mahmoud Moradi

Sharif University of Technology: Tehran, Tehran, IR

2002 | BSc (Physics)
Education
Source: Self-asserted source
Mahmoud Moradi

Works (50 of 71)

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Page 1 of 2

Structural Stability Comparisons Between Natural and Engineered Group II Chaperonins: Are Crenarchaeal “Heat Shock” Proteins Also “pH Shock” Resistant?

Microorganisms
2024-11-18 | Journal article
Contributors: Mercede Furr; Shadi A. Badiee; Sreenivasulu Basha; Shilpi Agrawal; Zeina Alraawi; Sobroney Heng; Carson Stacy; Yeasin Ahmed; Mahmoud Moradi; Thallapuranam K. S. Kumar et al.
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Molecular Dynamics Investigation of the Influenza Hemagglutinin Conformational Changes in Acidic pH

The Journal of Physical Chemistry B
2024-11-14 | Journal article
Contributors: Shadi A. Badiee; Vivek Govind Kumar; Mahmoud Moradi
Source: check_circle
Crossref

Conformational cycle of a protease-containing ABC transporter in lipid nanodiscs reveals the mechanism of cargo-protein coupling

Nature Communications
2024-10-20 | Journal article
Contributors: Ruojing Zhang; Kevin L. Jagessar; Matthew Brownd; Adithya Polasa; Richard A. Stein; Mahmoud Moradi; Erkan Karakas; Hassane S. Mchaourab
Source: check_circle
Crossref

Deciphering the Interdomain Coupling in a Gram-Negative Bacterial Membrane Insertase

The Journal of Physical Chemistry B
2024-10-10 | Journal article
Contributors: Adithya Polasa; Shadi A. Badiee; Mahmoud Moradi
Source: check_circle
Crossref

Differential Behavior of Conformational Dynamics in Active and Inactive States of Cannabinoid Receptor 1

The Journal of Physical Chemistry B
2024-09-05 | Journal article
Contributors: Ugochi H. Isu; Adithya Polasa; Mahmoud Moradi
Source: check_circle
Crossref

Conformational cycle of a protease-containing ABC transporter in lipid nanodiscs reveals the mechanism of cargo-protein coupling

2024-04-24 | Preprint
Contributors: Hassane Mchaourab; Ruojing Zhang; Kevin Jagessar; Adithya Polasa; Matthew Brownd; Richard Stein; Mahmoud Moradi; Erkan Karakas
Source: check_circle
Crossref

Addressing the Embeddability Problem in Transition Rate Estimation

The Journal of Physical Chemistry A
2023-07-13 | Journal article
Contributors: Curtis Goolsby; James Losey; Ashkan Fakharzadeh; Yuchen Xu; Marie-Christine Düker; Mila Getmansky Sherman; David S. Matteson; Mahmoud Moradi
Source: check_circle
Crossref

cpSRP43 Is Both Highly Flexible and Stable: Structural Insights Using a Combined Experimental and Computational Approach

Journal of Chemical Information and Modeling
2023-07-10 | Journal article
Contributors: Mitchell Benton; Mercede Furr; Vivek Govind Kumar; Adithya Polasa; Feng Gao; Colin David Heyes; Thallapuranam Krishnaswamy Suresh Kumar; Mahmoud Moradi
Source: check_circle
Crossref

The Alternating Access Mechanism in Mammalian Multidrug Resistance Transporters and Their Bacterial Homologs

Membranes
2023-05-30 | Journal article
Contributors: Shadi A Badiee; Ugochi H. Isu; Ehsaneh Khodadadi; Mahmoud Moradi
Source: check_circle
Crossref
grade
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Ins and Outs of Rocker Switch Mechanism in Major Facilitator Superfamily of Transporters

Membranes
2023-04-25 | Journal article
Contributors: Stephanie Sauve; Joseph Williamson; Adithya Polasa; Mahmoud Moradi
Source: check_circle
Crossref
grade
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Cholesterol in Class C GPCRs: Role, Relevance, and Localization

Membranes
2023-03-03 | Journal article
Contributors: Ugochi H. Isu; Shadi A Badiee; Ehsaneh Khodadadi; Mahmoud Moradi
Source: check_circle
Crossref
grade
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Developing a rational approach to designing recombinant proteins for peptide-directed nanoparticle synthesis

Nanoscale Advances
2022 | Journal article
Contributors: Adithya Polasa; Imann Mosleh; James Losey; Alireza Abbaspourrad; Robert Beitle; Mahmoud Moradi
Source: check_circle
Crossref

Binding affinity estimation from restrained umbrella sampling simulations

Nature Computational Science
2022-12-29 | Journal article
Contributors: Vivek Govind Kumar; Adithya Polasa; Shilpi Agrawal; Thallapuranam Krishnaswamy Suresh Kumar; Mahmoud Moradi
Source: check_circle
Crossref

Deciphering the Inter-domain Decoupling in the Gram-negative Bacterial Membrane Insertase

2022-08-09 | Preprint
Contributors: Adithya Polasa; Shadi A Badiee; Mahmoud Moradi
Source: check_circle
Crossref

Binding Affinity Estimation from Restrained Umbrella Sampling Simulations

2022-08-01 | Preprint
Contributors: Vivek Govind Kumar; Shilpi Agrawal; Thallapuranam Kumar; Mahmoud Moradi
Source: check_circle
Crossref

Prefusion spike protein conformational changes are slower in SARS-CoV-2 than in SARS-CoV-1

Journal of Biological Chemistry
2022-04 | Journal article
Contributors: Vivek Govind Kumar; Dylan S. Ogden; Ugochi H. Isu; Adithya Polasa; James Losey; Mahmoud Moradi
Source: check_circle
Crossref

A Companion Guide to the String Method with Swarms of Trajectories: Characterization, Performance, and Pitfalls

Journal of Chemical Theory and Computation
2022-03-08 | Journal article
Contributors: Haochuan Chen; Dylan Ogden; Shashank Pant; Wensheng Cai; Emad Tajkhorshid; Mahmoud Moradi; Benoît Roux; Christophe Chipot
Source: check_circle
Crossref

Molecular Dynamics–Based Thermodynamic and Kinetic Characterization of Membrane Protein Conformational Transitions

Methods in Molecular Biology
2021 | Book chapter
Part of ISBN: 9781071613931
Part of ISBN: 9781071613948
Part of ISSN: 1064-3745
Part of ISSN: 1940-6029
Source: Self-asserted source
Mahmoud Moradi

Mechanistic Picture for Monomeric Human Fibroblast Growth Factor 1 Stabilization by Heparin Binding

The Journal of Physical Chemistry B
2021-11-25 | Journal article
Contributors: Vivek Govind Kumar; Shilpi Agrawal; Thallapuranam Krishnaswamy Suresh Kumar; Mahmoud Moradi
Source: check_circle
Crossref

Mechanistic Picture for Chemomechanical Coupling in a Bacterial Proton-Coupled Oligopeptide Transporter from Streptococcus Thermophilus

The Journal of Physical Chemistry B
2021-09-02 | Journal article
Contributors: Kalyan Immadisetty; Mahmoud Moradi
Source: check_circle
Crossref

Computational Elucidation of Recombinant Fusion Protein Effect on Peptide-Directed Nanoparticles

[]
2021-03-12 | Preprint
Source: Self-asserted source
Mahmoud Moradi

Simulating freely-diffusing single-molecule FRET data with consideration of protein conformational dynamics

[]
2021-01-20 | Preprint
Source: Self-asserted source
Mahmoud Moradi

Thermodynamic and Kinetic Characterization of Protein Conformational Dynamics within a Riemannian Framework

[]
2021-01-20 | Preprint
Source: Self-asserted source
Mahmoud Moradi

Differential Dynamic Behavior of Prefusion Spike Proteins of SARS Coronaviruses 1 and 2

[]
2020-12-26 | Preprint
Source: Self-asserted source
Mahmoud Moradi

Mechanistic Picture for Monomeric Human Fibroblast Growth Factor 1 Stabilization by Heparin Binding

[]
2020-08-20 | Preprint
Source: Self-asserted source
Mahmoud Moradi

An Effective Electric Dipole Model for Voltage-induced Gating Mechanism of Lysenin

Scientific Reports
2019 | Journal article
EID:

2-s2.0-85070409424

Part of ISBN:

20452322

Contributors: Faouri, R.A.; Krueger, E.; Govind Kumar, V.; Fologea, D.; Straub, D.; Alismail, H.; Alfaori, Q.; Kight, A.; Ray, J.; Henry, R. et al.
Source: Self-asserted source
Mahmoud Moradi via Scopus - Elsevier

Lipid-Dependent Alternating Access Mechanism of a Bacterial Multidrug ABC Exporter

ACS Central Science
2019 | Journal article
EID:

2-s2.0-85059804852

Part of ISBN:

23747951 23747943

Contributors: Immadisetty, K.; Hettige, J.; Moradi, M.
Source: Self-asserted source
Mahmoud Moradi via Scopus - Elsevier
grade
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The Role of a Crystallographically Unresolved Cytoplasmic Loop in Stabilizing the Bacterial Membrane Insertase YidC2

Scientific Reports
2019 | Journal article
EID:

2-s2.0-85073053671

Part of ISBN:

20452322

Contributors: Harkey, T.; Govind Kumar, V.; Hettige, J.; Tabari, S.H.; Immadisetty, K.; Moradi, M.
Source: Self-asserted source
Mahmoud Moradi via Scopus - Elsevier
grade
Preferred source (of 2)‎

Conformational Transition Pathways in Major Facilitator Superfamily Transporters

[]
2019-08-05 | Preprint
Source: Self-asserted source
Mahmoud Moradi

ALS-causing mutations in profilin-1 alter its conformational dynamics: A computational approach to explain propensity for aggregation

Scientific Reports
2018 | Journal article
EID:

2-s2.0-85052711227

Part of ISBN:

20452322

Contributors: Kiaei, M.; Balasubramaniam, M.; Govind Kumar, V.; Shmookler Reis, R.J.; Moradi, M.; Varughese, K.I.
Source: Self-asserted source
Mahmoud Moradi via Scopus - Elsevier

High school biology students use of visual molecular dynamics as an authentic tool for learning about modeling as a professional scientific practice

Biochemistry and Molecular Biology Education
2018 | Journal article
EID:

2-s2.0-85042153583

Part of ISBN:

15393429 14708175

Contributors: Burgin, S.R.; Oramous, J.; Kaminski, M.; Stocker, L.; Moradi, M.
Source: Self-asserted source
Mahmoud Moradi via Scopus - Elsevier

Chemomechanical coupling in hexameric protein-protein interfaces harnesses energy within V-type ATPases

Journal of the American Chemical Society
2017 | Journal article
EID:

2-s2.0-85016153728

Part of ISBN:

15205126 00027863

Contributors: Singharoy, A.; Chipot, C.; Moradi, M.; Schulten, K.
Source: Self-asserted source
Mahmoud Moradi via Scopus - Elsevier
grade
Preferred source (of 2)‎

What Can and Cannot Be Learned from Molecular Dynamics Simulations of Bacterial Proton-Coupled Oligopeptide Transporter GkPOT?

Journal of Physical Chemistry B
2017 | Journal article
EID:

2-s2.0-85020211086

Part of ISBN:

15205207 15206106

Contributors: Immadisetty, K.; Hettige, J.; Moradi, M.
Source: Self-asserted source
Mahmoud Moradi via Scopus - Elsevier
grade
Preferred source (of 2)‎

Effective Riemannian Diffusion Model for Conformational Dynamics of Biomolecular Systems

Journal of Physical Chemistry Letters
2016 | Journal article
EID:

2-s2.0-85006741917

Part of ISBN:

19487185

Contributors: Fakharzadeh, A.; Moradi, M.
Source: Self-asserted source
Mahmoud Moradi via Scopus - Elsevier
grade
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Atomic-level characterization of transport cycle thermodynamics in the glycerol-3-phosphate:phosphate antiporter

Nat Comms
2015-09 | Journal article
Contributors: Mahmoud Moradi; Giray Enkavi; Emad Tajkhorshid
Source: Self-asserted source
Mahmoud Moradi via Crossref Metadata Search
grade
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Calculating transition and reaction rates with nonequilibrium work measurements

J. Phys.: Conf. Ser.
2015-09 | Journal article
Contributors: Mahmoud Moradi; Celeste Sagui; Christopher Roland
Source: Self-asserted source
Mahmoud Moradi via Crossref Metadata Search
grade
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The Adaptively Biased Molecular Dynamics method revisited: New capabilities and an application

J. Phys.: Conf. Ser.
2015-09 | Journal article
Contributors: Mahmoud Moradi; Volodymyr Babin; Christopher Roland; Celeste Sagui
Source: Self-asserted source
Mahmoud Moradi via Crossref Metadata Search
grade
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Computational characterization of structural dynamics underlying function in active membrane transporters

Current Opinion in Structural Biology
2015-04 | Journal article
Contributors: Jing Li; Po-Chao Wen; Mahmoud Moradi; Emad Tajkhorshid
Source: Self-asserted source
Mahmoud Moradi via Crossref Metadata Search
grade
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Advances in Atomic-Level Simulations of Large-Scale Functional Motions of Membrane Transporters

Biophysical Journal
2015-01 | Journal article
Contributors: Emad Tajkhorshid; Mahmoud Moradi; Jing Li; Po-Chao Wen; Sundar Thangapandian; Josh Vermaas
Source: Self-asserted source
Mahmoud Moradi via Crossref Metadata Search

Towards Thermodynamic Characterization of Transport Cycle in Secondary Transporters using Enhanced Sampling Techniques

Biophysical Journal
2015-01 | Journal article
Contributors: Mahmoud Moradi; Giray Enkavi; Emad Tajkhorshid
Source: Self-asserted source
Mahmoud Moradi via Crossref Metadata Search

A Microscopic View of the Mechanisms of Active Transport Across the Cellular Membrane

Annual Reports in Computational Chemistry
2014 | Other
Contributors: Giray Enkavi; Jing Li; Pochao Wen; Sundarapandian Thangapandian; Mahmoud Moradi; Tao Jiang; Wei Han; Emad Tajkhorshid
Source: Self-asserted source
Mahmoud Moradi via Crossref Metadata Search
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Erratum: Investigating rare events with nonequilibrium work measurements. I. Nonequilibrium transition path probabilities (Journal of Chemical Physics (2014) 140 (034114))

Journal of Chemical Physics
2014 | Journal article
EID:

2-s2.0-84907190224

Part of ISBN:

00219606

Contributors: Moradi, M.; Sagui, C.; Roland, C.
Source: Self-asserted source
Mahmoud Moradi via Scopus - Elsevier

Erratum: Investigating rare events with nonequilibrium work measurements. II. Transition and reaction rates (Journal of Chemical Physics (2014) 140 (034115))

Journal of Chemical Physics
2014 | Journal article
EID:

2-s2.0-84907222811

Part of ISBN:

00219606

Contributors: Moradi, M.; Sagui, C.; Roland, C.
Source: Self-asserted source
Mahmoud Moradi via Scopus - Elsevier

Computational Recipe for Efficient Description of Large-Scale Conformational Changes in Biomolecular Systems

J. Chem. Theory Comput.
2014-07-08 | Journal article
Contributors: Mahmoud Moradi; Emad Tajkhorshid
Source: Self-asserted source
Mahmoud Moradi via Crossref Metadata Search
grade
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Conformational Dynamics at the Inner Gate of KcsA during Activation

Biochemistry
2014-04 | Journal article
Contributors: Raymond E. Hulse; Joseph R. Sachleben; Po-Chao Wen; Mahmoud Moradi; Emad Tajkhorshid; Eduardo Perozo
Source: Self-asserted source
Mahmoud Moradi via Crossref Metadata Search
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Characterizing Conformational Ensemble and Free Energy Landscape of ABC Exporters using a Novel System-Specific Sampling Approach

Biophysical Journal
2014-01 | Journal article
Contributors: Mahmoud Moradi; Emad Tajkhorshid
Source: Self-asserted source
Mahmoud Moradi via Crossref Metadata Search

Driven Adaptive-Bias Scheme: A Hybrid Free Energy Method for Biomolecular Systems with Complex Energy Landscapes

Biophysical Journal
2014-01 | Journal article
Contributors: Mahmoud Moradi; Emad Tajkhorshid
Source: Self-asserted source
Mahmoud Moradi via Crossref Metadata Search

Investigating rare events with nonequilibrium work measurements. I. Nonequilibrium transition path probabilities

J. Chem. Phys.
2014-01 | Journal article
Contributors: Mahmoud Moradi; Celeste Sagui; Christopher Roland
Source: Self-asserted source
Mahmoud Moradi via Crossref Metadata Search
grade
Preferred source (of 2)‎

Investigating rare events with nonequilibrium work measurements. II. Transition and reaction rates

J. Chem. Phys.
2014-01 | Journal article
Contributors: Mahmoud Moradi; Celeste Sagui; Christopher Roland
Source: Self-asserted source
Mahmoud Moradi via Crossref Metadata Search
grade
Preferred source (of 2)‎

Free energies, structural characteristics and transition mechanisms of proline-rich peptides

Proline: Biosynthesis, Regulation and Health Benefits
2013 | Book chapter
EID:

2-s2.0-84895224003

Contributors: Moradi, M.; Babin, V.; Roland, C.; Sagui, C.
Source: Self-asserted source
Mahmoud Moradi via Scopus - Elsevier
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Peer review (33 reviews for 13 publications/grants)

Review activity for Access microbiology. (1)
Review activity for ACS chemical neuroscience. (2)
Review activity for ACS infectious diseases. (1)
Review activity for ACS omega. (2)
Review activity for Biophysical journal. (1)
Review activity for Communications biology. (1)
Review activity for Journal of chemical information and modeling. (2)
Review activity for Journal of chemical theory and computation : (2)
Review activity for Langmuir : (1)
Review activity for Nature communications (8)
Review activity for PLoS computational biology. (1)
Review activity for The journal of physical chemistry. (9)
Review activity for The journal of physical chemistry. (2)