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Scopus Author ID: 57203782638

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Employment (1)

Children's Hospital of Philadelphia: Philadelphia, PA, US

2020-01-12 to present | Bioinformatics Scientist (Center for Data-driven Discovery in Biomedicine)
Employment
Source: Self-asserted source
Ammar Naqvi

Education and qualifications (1)

Rutgers The State University of New Jersey: New Brunswick, NJ, US

2015-05-10 | PhD (Computational and Integrative Biology)
Education
Source: Self-asserted source
Ammar Naqvi

Professional activities (2)

RNA Society: Bethesda, Maryland, US

Membership
Source: Self-asserted source
Ammar Naqvi

International Society for Computational Biology: Bethesda, Maryland, US

Membership
Source: Self-asserted source
Ammar Naqvi

Works (34)

Genetic ancestry superpopulations show distinct prevalence and outcomes across pediatric central nervous system tumors from the Pediatric Brain Tumor Atlas and Pediatric Neuro-Oncology Consortium

Neuro-Oncology
2025-01-23 | Journal article
DOI: 10.1093/neuonc/noaf017
Contributors: Ryan J Corbett; Cricket C Gullickson; Zhuangzhuang Geng; Miguel A Brown; Bo Zhang; Chuwei Zhong; Nicholas Van Kuren; Antonia Chroni; Christopher Blackden; Ammar S Naqvi et al.
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Crossref

Characterization of aberrant splicing in pediatric central nervous system tumors revealsCLK1as a candidate oncogenic dependency

2024-08-06 | Preprint
DOI: 10.1101/2024.08.03.606419
Contributors: Ammar S. Naqvi; Ryan J. Corbett; Priyanka Seghal; Karina L. Conkrite; Komal S. Rathi; Brian M. Ennis; Katharina E Hayer; Bo Zhang; Miguel A. Brown; Daniel P. Miller et al.
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Crossref

Genetic ancestry superpopulations show distinct prevalence and outcomes across pediatric central nervous system tumors from the PBTA and PNOC

2024-06-16 | Preprint
DOI: 10.1101/2024.06.14.24308885
Contributors: Ryan J. Corbett; Cricket C. Gullickson; Zhuangzhuang Geng; Miguel A. Brown; Bo Zhang; Chuwei Zhong; Nicholas Van Kuren; Antonia Chroni; Christopher Blackden; Ammar S. Naqvi et al.
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Crossref

AutoGVP: a dockerized workflow integrating ClinVar and InterVar germline sequence variant classification

2023-12-01 | Preprint
DOI: 10.1101/2023.11.29.569103
Contributors: Jung Kim; Ammar S. Naqvi; Ryan J. Corbett; Rebecca S. Kaufman; Zalman Vaksman; Miguel A. Brown; Daniel P. Miller; Saksham Phul; Zhuangzhuang Geng; Phillip B. Storm et al.
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Crossref

FBXW7β isoform drives transcriptional activation of the proinflammatory TNF cluster in human pro-B cells

Blood Advances
2023-04-11 | Journal article
DOI: 10.1182/bloodadvances.2022007910
Contributors: Scarlett Y. Yang; Katharina E. Hayer; Hossein Fazelinia; Lynn A. Spruce; Mukta Asnani; Kathryn L. Black; Ammar S. Naqvi; Vinodh Pillai; Yoseph Barash; Kojo S. J. Elenitoba-Johnson et al.
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Crossref

Data from Modulation of CD22 Protein Expression in Childhood Leukemia by Pervasive Splicing Aberrations: Implications for CD22-Directed Immunotherapies

2023-04-04 | Preprint
DOI: 10.1158/2643-3230.c.6550676
Contributors: Sisi Zheng; Elisabeth Gillespie; Ammar S. Naqvi; Katharina E. Hayer; Zhiwei Ang; Manuel Torres-Diz; Mathieu Quesnel-Vallières; David A. Hottman; Asen Bagashev; John Chukinas et al.
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Crossref

Data from Modulation of CD22 Protein Expression in Childhood Leukemia by Pervasive Splicing Aberrations: Implications for CD22-Directed Immunotherapies

2023-04-04 | Preprint
DOI: 10.1158/2643-3230.c.6550676.v1
Contributors: Sisi Zheng; Elisabeth Gillespie; Ammar S. Naqvi; Katharina E. Hayer; Zhiwei Ang; Manuel Torres-Diz; Mathieu Quesnel-Vallières; David A. Hottman; Asen Bagashev; John Chukinas et al.
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Crossref

Supplementary Data from Modulation of CD22 Protein Expression in Childhood Leukemia by Pervasive Splicing Aberrations: Implications for CD22-Directed Immunotherapies

2023-04-04 | Preprint
DOI: 10.1158/2643-3230.22544528.v1
Contributors: Sisi Zheng; Elisabeth Gillespie; Ammar S. Naqvi; Katharina E. Hayer; Zhiwei Ang; Manuel Torres-Diz; Mathieu Quesnel-Vallières; David A. Hottman; Asen Bagashev; John Chukinas et al.
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Crossref

Supplementary Data from Modulation of CD22 Protein Expression in Childhood Leukemia by Pervasive Splicing Aberrations: Implications for CD22-Directed Immunotherapies

2023-04-04 | Preprint
DOI: 10.1158/2643-3230.22544525.v1
Contributors: Sisi Zheng; Elisabeth Gillespie; Ammar S. Naqvi; Katharina E. Hayer; Zhiwei Ang; Manuel Torres-Diz; Mathieu Quesnel-Vallières; David A. Hottman; Asen Bagashev; John Chukinas et al.
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Crossref

Supplementary Data from Modulation of CD22 Protein Expression in Childhood Leukemia by Pervasive Splicing Aberrations: Implications for CD22-Directed Immunotherapies

2023-04-04 | Preprint
DOI: 10.1158/2643-3230.22544534.v1
Contributors: Sisi Zheng; Elisabeth Gillespie; Ammar S. Naqvi; Katharina E. Hayer; Zhiwei Ang; Manuel Torres-Diz; Mathieu Quesnel-Vallières; David A. Hottman; Asen Bagashev; John Chukinas et al.
Source: check_circle
Crossref

Supplementary Data from Modulation of CD22 Protein Expression in Childhood Leukemia by Pervasive Splicing Aberrations: Implications for CD22-Directed Immunotherapies

2023-04-04 | Preprint
DOI: 10.1158/2643-3230.22544531.v1
Contributors: Sisi Zheng; Elisabeth Gillespie; Ammar S. Naqvi; Katharina E. Hayer; Zhiwei Ang; Manuel Torres-Diz; Mathieu Quesnel-Vallières; David A. Hottman; Asen Bagashev; John Chukinas et al.
Source: check_circle
Crossref

Supplementary Data from Modulation of CD22 Protein Expression in Childhood Leukemia by Pervasive Splicing Aberrations: Implications for CD22-Directed Immunotherapies

2023-04-04 | Preprint
DOI: 10.1158/2643-3230.22544528
Contributors: Sisi Zheng; Elisabeth Gillespie; Ammar S. Naqvi; Katharina E. Hayer; Zhiwei Ang; Manuel Torres-Diz; Mathieu Quesnel-Vallières; David A. Hottman; Asen Bagashev; John Chukinas et al.
Source: check_circle
Crossref

Supplementary Data from Modulation of CD22 Protein Expression in Childhood Leukemia by Pervasive Splicing Aberrations: Implications for CD22-Directed Immunotherapies

2023-04-04 | Preprint
DOI: 10.1158/2643-3230.22544531
Contributors: Sisi Zheng; Elisabeth Gillespie; Ammar S. Naqvi; Katharina E. Hayer; Zhiwei Ang; Manuel Torres-Diz; Mathieu Quesnel-Vallières; David A. Hottman; Asen Bagashev; John Chukinas et al.
Source: check_circle
Crossref

Supplementary Data from Modulation of CD22 Protein Expression in Childhood Leukemia by Pervasive Splicing Aberrations: Implications for CD22-Directed Immunotherapies

2023-04-04 | Preprint
DOI: 10.1158/2643-3230.22544534
Contributors: Sisi Zheng; Elisabeth Gillespie; Ammar S. Naqvi; Katharina E. Hayer; Zhiwei Ang; Manuel Torres-Diz; Mathieu Quesnel-Vallières; David A. Hottman; Asen Bagashev; John Chukinas et al.
Source: check_circle
Crossref

Supplementary Data from Modulation of CD22 Protein Expression in Childhood Leukemia by Pervasive Splicing Aberrations: Implications for CD22-Directed Immunotherapies

2023-04-04 | Preprint
DOI: 10.1158/2643-3230.22544525
Contributors: Sisi Zheng; Elisabeth Gillespie; Ammar S. Naqvi; Katharina E. Hayer; Zhiwei Ang; Manuel Torres-Diz; Mathieu Quesnel-Vallières; David A. Hottman; Asen Bagashev; John Chukinas et al.
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Crossref

Targeting CD123 in blastic plasmacytoid dendritic cell neoplasm using allogeneic anti-CD123 CAR T cells

Nature Communications
2022-04-28 | Journal article
DOI: 10.1038/s41467-022-29669-8
Contributors: Tianyu Cai; Agnès Gouble; Kathryn L. Black; Anna Skwarska; Ammar S. Naqvi; Deanne Taylor; Ming Zhao; Qi Yuan; Mayumi Sugita; Qi Zhang et al.
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Crossref

FBXW7β isoform drives transcriptional activation of a proinflammatory TNF cluster in normal and malignant pro-B cells

2022-04-25 | Preprint
DOI: 10.1101/2022.04.24.489313
Contributors: Scarlett Y. Yang; Katharina E. Hayer; Hossein Fazelinia; Lynn A. Spruce; Mukta Asnani; Kathryn L. Black; Ammar S. Naqvi; Vinodh Pillai; Yoseph Barash; Kojo S. J. Elenitoba-Johnson et al.
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Crossref

Modulation of CD22 Protein Expression in Childhood Leukemia by Pervasive Splicing Aberrations: Implications for CD22-Directed Immunotherapies

Blood Cancer Discovery
2022-03-01 | Journal article
DOI: 10.1158/2643-3230.BCD-21-0087
Contributors: Sisi Zheng; Elisabeth Gillespie; Ammar S. Naqvi; Katharina E. Hayer; Zhiwei Ang; Manuel Torres-Diz; Mathieu Quesnel-Vallières; David A. Hottman; Asen Bagashev; John Chukinas et al.
Source: check_circle
Crossref

Retention of CD19 intron 2 contributes to CART-19 resistance in leukemias with subclonal frameshift mutations in CD19

Leukemia
2020 | Journal article
DOI: 10.1038/s41375-019-0580-z
EID:

2-s2.0-85077180700

Part of ISBN:

14765551 08876924
Contributors: Asnani, M.; Hayer, K.E.; Naqvi, A.S.; Zheng, S.; Yang, S.Y.; Oldridge, D.; Ibrahim, F.; Maragkakis, M.; Gazzara, M.R.; Black, K.L. et al.
Source: Self-asserted source
Ammar Naqvi via Scopus - Elsevier

annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions

BMC Bioinformatics
2020-12 | Journal article
DOI: 10.1186/s12859-020-03922-7
Contributors: Krutika S. Gaonkar; Federico Marini; Komal S. Rathi; Payal Jain; Yuankun Zhu; Nicholas A. Chimicles; Miguel A. Brown; Ammar S. Naqvi; Bo Zhang; Phillip B. Storm et al.
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Crossref

A transcriptome-based classifier to determine molecular subtypes in medulloblastoma

PLOS Computational Biology
2020-10-29 | Journal article
DOI: 10.1371/journal.pcbi.1008263
Contributors: Komal S. Rathi; Mihaela Pertea; Sherjeel Arif; Mateusz Koptyra; Ammar S. Naqvi; Deanne M. Taylor; Phillip B. Storm; Adam C. Resnick; Jo Lynne Rokita; Pichai Raman
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Crossref

Erratum: Aberrant splicing in B-cell acute lymphoblastic leukemia (Nucleic Acids Research (2018) DOI: 10.1093/nar/gky946)

Nucleic Acids Research
2019 | Journal article
DOI: 10.1093/nar/gky1231
EID:

2-s2.0-85060571474

Part of ISBN:

13624962 03051048
Contributors: Black, K.L.; Naqvi, A.S.; Asnani, M.; Hayer, K.E.; Yang, S.Y.; Gillespie, E.; Bagashev, A.; Pillai, V.; Tasian, S.K.; Gazzara, M.R. et al.
Source: Self-asserted source
Ammar Naqvi via Scopus - Elsevier

Aberrant splicing in B-cell acute lymphoblastic leukemia

Nucleic Acids Research
2018 | Journal article
DOI: 10.1093/nar/gky946
EID:

2-s2.0-85055455087

Part of ISBN:

13624962 03051048
Contributors: Black, K.L.; Naqvi, A.S.; Asnani, M.; Hayer, K.E.; Yang, S.Y.; Gillespie, E.; Bagashev, A.; Pillai, V.; Tasian, S.K.; Gazzara, M.R. et al.
Source: Self-asserted source
Ammar Naqvi via Scopus - Elsevier

Heterogeneity of surface CD19 and CD22 expression in B lymphoblastic leukemia

American Journal of Hematology
2018 | Journal article
DOI: 10.1002/ajh.25235
EID:

2-s2.0-85052958190

Part of ISBN:

10968652 03618609
Contributors: Rosenthal, J.; Naqvi, A.S.; Luo, M.; Wertheim, G.; Paessler, M.; Thomas-Tikhonenko, A.; Rheingold, S.R.; Pillai, V.
Source: Self-asserted source
Ammar Naqvi via Scopus - Elsevier

Age-driven modulation of tRNA-derived fragments in Drosophila and their potential targets

Biology Direct
2015-12 | Journal article
DOI: 10.1186/s13062-015-0081-6
Part of ISSN: 1745-6150
Source: Self-asserted source
Ammar Naqvi

The Msi Family of RNA-Binding Proteins Function Redundantly as Intestinal Oncoproteins

Cell Reports
2015-12 | Journal article
DOI: 10.1016/j.celrep.2015.11.022
Part of ISSN: 2211-1247
Source: Self-asserted source
Ammar Naqvi

Visualization of nucleotide substitutions in the (micro)transcriptome.

BMC genomics
2014-05-20 | Journal article
DOI: 10.1186/1471-2164-15-s4-s9
PMID: 25055822
PMC: PMC4083414
Source: Self-asserted source
Ammar Naqvi

Impact of age-associated increase in 2'-O-methylation of miRNAs on aging and neurodegeneration in Drosophila.

Genes & development
2014-01-01 | Journal article
DOI: 10.1101/gad.226654.113
PMID: 24395246
PMC: PMC3894412
Source: Self-asserted source
Ammar Naqvi

Colonic microbiome is altered in alcoholism.

American journal of physiology. Gastrointestinal and liver physiology
2012-01-12 | Journal article
DOI: 10.1152/ajpgi.00380.2011
PMID: 22241860
PMC: PMC3362077
Source: Self-asserted source
Ammar Naqvi

The exoribonuclease Nibbler controls 3' end processing of microRNAs in Drosophila.

Current biology : CB
2011-11-03 | Journal article
DOI: 10.1016/j.cub.2011.10.006
PMID: 22055292
PMC: PMC3255556
Source: Self-asserted source
Ammar Naqvi

Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence.

Genome research
2010-12-22 | Journal article
DOI: 10.1101/gr.116657.110
PMID: 21177969
PMC: PMC3032924
Source: Self-asserted source
Ammar Naqvi

Analysis of multitag pyrosequence data from human cervical lavage samples.

Chemistry & biodiversity
2010-05-01 | Journal article
DOI: 10.1002/cbdv.200900321
PMID: 20491067
Source: Self-asserted source
Ammar Naqvi

Network-based modeling of the human gut microbiome.

Chemistry & biodiversity
2010-05-01 | Journal article
DOI: 10.1002/cbdv.200900324
PMID: 20491063
PMC: PMC3681515
Source: Self-asserted source
Ammar Naqvi

Characterization of the oral fungal microbiome (mycobiome) in healthy individuals.

PLoS pathogens
2010-01-08 | Journal article
DOI: 10.1371/journal.ppat.1000713
PMID: 20072605
PMC: PMC2795202
Source: Self-asserted source
Ammar Naqvi

Peer review (1 review for 1 publication/grant)

Review activity for Nature communications (1)
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