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computational genomics, microbial genomics, bioinformatics, comparative genomics

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Employment (1)

National Library of Medicine: Bethesda, MD, US

Employment
Source: Self-asserted source
Xiaofang Jiang

Works (41)

Convergent evolution of oxidized sugar metabolism in commensal and pathogenic microbes in the inflamed gut

Nature Communications
2025-01-28 | Journal article
Contributors: Sophia Levy; Angela K. Jiang; Maggie R. Grant; Gabriela Arp; Glory Minabou Ndjite; Xiaofang Jiang; Brantley Hall
Source: check_circle
Crossref

Bacterial intragenic inversions: a new layer of diversity

Trends in Genetics
2024-12 | Journal article
Contributors: Brantley Hall; Xiaofang Jiang
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Crossref

Bilirubin Reductase Shows Host-Specific Associations in Animal Large Intestines

2024-12-08 | Other
Contributors: Xiaofang Jiang; Keith Dufault-Thompson; Sophia Levy; Brantley Hall
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Crossref

Gut Microbial Utilization of the Alternative Sweetener, D-Allulose, via AlsE

2024-11-08 | Preprint
Contributors: Glory Minabou Ndjite; Angela Jiang; Charlotte Ravel; Maggie Grant; Xiaofang Jiang; Brantley Hall
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Crossref

Comprehensive Genomic and Evolutionary Analysis of Biofilm Matrix Clusters and Proteins in the Vibrio Genus

2024-08-20 | Preprint
Contributors: Yiyan Yang; Jing Yan; Rich Olson; Xiaofang Jiang
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Crossref

The three-sided right-handed β-helix is a versatile fold for glycan interactions

Glycobiology
2024-05-26 | Journal article
Contributors: Audrey A Burnim; Keith Dufault-Thompson; Xiaofang Jiang
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Crossref

Annotating microbial functions with ProkFunFind

mSystems
2024-03-19 | Journal article
Contributors: Keith Dufault-Thompson; Xiaofang Jiang; Samuel Chaffron
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Crossref

BilR is a gut microbial enzyme that reduces bilirubin to urobilinogen.

Nature microbiology
2024-01-03 | Journal article | Author
Contributors: Brantley Hall; Sophia Levy; Keith Dufault-Thompson; Gabriela Arp; Aoshu Zhong; Ndjite GM; Weiss A; Braccia D; Conor Jenkins; Maggie Grant et al.
Source: Self-asserted source
Xiaofang Jiang

Large-scale genomic survey with deep learning-based method reveals strain-level phage specificity determinants

GigaScience
2024-01-02 | Journal article
Contributors: Yiyan Yang; Keith Dufault-Thompson; Wei Yan; Tian Cai; Lei Xie; Xiaofang Jiang
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Crossref

Deciphering Phage-Host Specificity Based on the Association of Phage Depolymerases and Bacterial Surface Glycan with Deep Learning

2023-06-16 | Preprint
Contributors: Yiyan Yang; Keith Dufault-Thompson; Wei Yan; Tian Cai; Lei Xie; Xiaofang Jiang
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Crossref

Evolink: a phylogenetic approach for rapid identification of genotype–phenotype associations in large-scale microbial multispecies data

Bioinformatics
2023-05-04 | Journal article
Contributors: Yiyan Yang; Xiaofang Jiang; Yann Ponty
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Crossref

Toxic anti-phage defense proteins inhibited by intragenic antitoxin proteins

2023-05-02 | Preprint
Contributors: Aoshu Zhong; Xiaofang Jiang; Alison B. Hickman; Katherine Klier; Gabriella I. C. Teodoro; Fred Dyda; Michael T. Laub; Gisela Storz
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Crossref

Applications of de Bruijn graphs in microbiome research

iMeta
2022-03 | Journal article
Contributors: Keith Dufault‐Thompson; Xiaofang Jiang
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Crossref

Bacteroidales species in the human gut are a reservoir of antibiotic resistance genes regulated by invertible promoters.

NPJ biofilms and microbiomes
2022-01-10 | Journal article
Source: Self-asserted source
Xiaofang Jiang
grade
Preferred source (of 2)‎

KH domain proteins: Another family of bacterial RNA matchmakers?

Molecular microbiology
2021-11-19 | Journal article
Source: Self-asserted source
Xiaofang Jiang

The Capacity to Produce Hydrogen Sulfide (H<sub>2</sub>S) via Cysteine Degradation Is Ubiquitous in the Human Gut Microbiome.

Frontiers in microbiology
2021-10-20 | Journal article
Source: Self-asserted source
Xiaofang Jiang

The taxonomic distribution of histamine-secreting bacteria in the human gut microbiome.

BMC genomics
2021-09-26 | Journal article
Source: Self-asserted source
Xiaofang Jiang

High-throughput sequencing of SARS-CoV-2 in wastewater provides insights into circulating variants.

Water research
2021-09-25 | Journal article
Source: Self-asserted source
Xiaofang Jiang

Characterizing Transcriptional Regulatory Sequences in Coronaviruses and Their Role in Recombination.

Molecular biology and evolution
2021-04-01 | Journal article
Source: Self-asserted source
Xiaofang Jiang
grade
Preferred source (of 2)‎

The capacity to produce hydrogen sulfide (H2S) via cysteine degradation is ubiquitous in the human gut microbiome

2021-03-24 | Other
Contributors: Domenick J. Braccia; Xiaofang Jiang; Mihai Pop; A. Brantley Hall
Source: check_circle
Crossref

Comprehensive analysis of chromosomal mobile genetic elements in the gut microbiome reveals phylum-level niche-adaptive gene pools.

PloS one
2019-12-12 | Journal article
Source: Self-asserted source
Xiaofang Jiang

A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research.

Nature medicine
2019-09-02 | Journal article
Source: Self-asserted source
Xiaofang Jiang

Invertible promoters mediate bacterial phase variation, antibiotic resistance, and host adaptation in the gut.

Science (New York, N.Y.)
2019-01-01 | Journal article
Source: Self-asserted source
Xiaofang Jiang
grade
Preferred source (of 2)‎

Gut microbiota composition and functional changes in inflammatory bowel disease and irritable bowel syndrome.

Science translational medicine
2018-12-01 | Journal article
Source: Self-asserted source
Xiaofang Jiang
grade
Preferred source (of 2)‎

Analysis of 1135 gut metagenomes identifies sex-specific resistome profiles.

Gut microbes
2018-10-29 | Journal article
Source: Self-asserted source
Xiaofang Jiang

Predictability and persistence of prebiotic dietary supplementation in a healthy human cohort.

Scientific reports
2018-08-23 | Journal article
Source: Self-asserted source
Xiaofang Jiang

A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients.

Genome medicine
2017-11-28 | Journal article
Source: Self-asserted source
Xiaofang Jiang

Single molecule RNA sequencing uncovers trans-splicing and improves annotations in Anopheles stephensi.

Insect molecular biology
2017-02-09 | Journal article
Source: Self-asserted source
Xiaofang Jiang

The Physical Genome Mapping of Anopheles albimanus Corrected Scaffold Misassemblies and Identified Interarm Rearrangements in Genus Anopheles.

G3 (Bethesda, Md.)
2017-01-05 | Journal article
Source: Self-asserted source
Xiaofang Jiang

Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes.

Genome research
2016-11-15 | Journal article
Source: Self-asserted source
Xiaofang Jiang

Radical remodeling of the Y chromosome in a recent radiation of malaria mosquitoes.

Proceedings of the National Academy of Sciences of the United States of America
2016-03-29 | Journal article
Source: Self-asserted source
Xiaofang Jiang

Genome sequence of the Asian Tiger mosquito, Aedes albopictus, reveals insights into its biology, genetics, and evolution.

Proceedings of the National Academy of Sciences of the United States of America
2015-10-19 | Journal article
Source: Self-asserted source
Xiaofang Jiang

Complete Dosage Compensation in Anopheles stephensi and the Evolution of Sex-Biased Genes in Mosquitoes.

Genome biology and evolution
2015-06-15 | Journal article
Source: Self-asserted source
Xiaofang Jiang

SEX DETERMINATION. A male-determining factor in the mosquito Aedes aegypti.

Science (New York, N.Y.)
2015-05-21 | Journal article
Source: Self-asserted source
Xiaofang Jiang

Mosquito genomics. Extensive introgression in a malaria vector species complex revealed by phylogenomics.

Science (New York, N.Y.)
2014-11-27 | Journal article
Source: Self-asserted source
Xiaofang Jiang

Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes.

Science (New York, N.Y.)
2014-11-27 | Journal article
Source: Self-asserted source
Xiaofang Jiang

Genome analysis of a major urban malaria vector mosquito, Anopheles stephensi.

Genome biology
2014-09-23 | Journal article
Source: Self-asserted source
Xiaofang Jiang

Integrated proteomic and transcriptomic analysis of the Aedes aegypti eggshell.

BMC developmental biology
2014-04-05 | Journal article
Source: Self-asserted source
Xiaofang Jiang

Insights into the preservation of the homomorphic sex-determining chromosome of Aedes aegypti from the discovery of a male-biased gene tightly linked to the M-locus.

Genome biology and evolution
2014-01-01 | Journal article
Source: Self-asserted source
Xiaofang Jiang

The complete genome sequence of a novel T4-like bacteriophage, IME08.

Archives of virology
2011-05-26 | Journal article
Source: Self-asserted source
Xiaofang Jiang

Sequence characteristics of T4-like bacteriophage IME08 benome termini revealed by high throughput sequencing.

Virology journal
2011-04-27 | Journal article
Source: Self-asserted source
Xiaofang Jiang

Peer review (4 reviews for 4 publications/grants)

Review activity for Genome biology. (1)
Review activity for Nature communications (1)
Review activity for Nature microbiology. (1)
Review activity for Trends in molecular medicine. (1)