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Employment (1)

Peking University: Beijing, Beijing, CN

2015-10-01 to present | Postdoc (ChemBio)
Employment
Source: Self-asserted source
Yuan Liu

Works (44)

Folds from fold: Exploring topological isoforms of a single-domain protein

Proceedings of the National Academy of Sciences
2024-10-22 | Journal article
DOI: 10.1073/pnas.2407355121
Part of ISSN: 0027-8424
Part of ISSN: 1091-6490
Contributors: Zhiyu Qu; Lianjie Xu; Fengyi Jiang; Yuan Liu; Wen-Bin Zhang
Source: Self-asserted source
Yuan Liu

Thermal proteome profiling reveals fructose-1,6-bisphosphate as a phosphate donor to activate phosphoglycerate mutase 1

Nature Communications
2024-10-16 | Journal article | Author
DOI: 10.1038/s41467-024-53238-w
Part of ISSN: 2041-1723
Contributors: Yanling Zhang; Yafei Cao; Xia Wu; Zhenghui Chen; Bowen Chen; Anhui Wang; Yanshen Guo; Wei Chen; Ruolan Xue; Zihua Liu et al.
Source: Self-asserted source
Yuan Liu

Discovery of metal-binding proteins by thermal proteome profiling

Nature Chemical Biology
2024-06 | Journal article
DOI: 10.1038/s41589-024-01563-y
Contributors: Xin Zeng; Tiantian Wei; Xianghe Wang; Yuan Liu; Zhenshu Tan; Yihai Zhang; Tianyu Feng; Yao Cheng; Fengzhang Wang; Bin Ma et al.
Source: check_circle
Crossref

Amplifiable protein identification via residue-resolved barcoding and composition code counting

National Science Review
2024-06-13 | Journal article
DOI: 10.1093/nsr/nwae183
Part of ISSN: 2095-5138
Part of ISSN: 2053-714X
Contributors: Weiming Guo; Yuan Liu; Yu Han; Huan Tang; Xinyuan Fan; Chu Wang; Peng Chen
Source: Self-asserted source
Yuan Liu

Chemoproteomic Profiling of Signaling Metabolite Fructose-1,6-Bisphosphate Interacting Proteins in Living Cells

Journal of the American Chemical Society
2024-06-05 | Journal article
DOI: 10.1021/jacs.4c01335
Part of ISSN: 0002-7863
Part of ISSN: 1520-5126
Contributors: Tian Li; Anhui Wang; Yanling Zhang; Wei Chen; Yanshen Guo; Xia Yuan; Yuan Liu; Yiqun Geng
Source: Self-asserted source
Yuan Liu

Unsupervisedly Prompting AlphaFold2 for Accurate Few-Shot Protein Structure Prediction

Journal of Chemical Theory and Computation
2023-11-28 | Journal article
DOI: 10.1021/acs.jctc.3c00528
Part of ISSN: 1549-9618
Part of ISSN: 1549-9626
Contributors: Jun Zhang; Sirui Liu; Mengyun Chen; Haotian Chu; Min Wang; Zidong Wang; Jialiang Yu; Ningxi Ni; Fan Yu; CHEN Dechin et al.
Source: Self-asserted source
Yuan Liu

Optical Control of Protein Functions via Genetically Encoded Photocaged Aspartic Acids

Journal of the American Chemical Society
2023-09-06 | Journal article
DOI: 10.1021/jacs.3c03701
Part of ISSN: 0002-7863
Part of ISSN: 1520-5126
Contributors: Xianrui Zhang; Haoran Huang; Yuan Liu; Zhigang Wu; Fengzhang Wang; Xinyuan Fan; Peng Chen; Jie Wang
Source: Self-asserted source
Yuan Liu

Co-evolution-based prediction of metal-binding sites in proteomes by machine learning

Nature Chemical Biology
2023-05 | Journal article
DOI: 10.1038/s41589-022-01223-z
Contributors: Yao Cheng; Haobo Wang; Hua Xu; Yuan Liu; Bin Ma; Xuemin Chen; Xin Zeng; Xianghe Wang; Bo Wang; Carina Shiau et al.
Source: check_circle
Crossref

CIMAGE2.0: An Expanded Tool for Quantitative Analysis of Activity-Based Protein Profiling (ABPP) Data

Journal of Proteome Research
2021-09-08 | Journal article
DOI: 10.1021/acs.jproteome.1c00455
Part of ISSN: 1535-3893
Part of ISSN: 1535-3907
Source: Self-asserted source
Yuan Liu

CAGE‐prox: A Unified Approach for Time‐Resolved Protein Activation in Living Systems

Current Protocols
2021-06 | Journal article
DOI: 10.1002/cpz1.180
Part of ISSN: 2691-1299
Part of ISSN: 2691-1299
Source: Self-asserted source
Yuan Liu

Development and Validation of Machine Learning–based Model for the Prediction of Malignancy in Multiple Pulmonary Nodules: Analysis from Multicentric Cohorts

Clinical Cancer Research
2021-04-15 | Journal article
DOI: 10.1158/1078-0432.ccr-20-4007
Part of ISSN: 1078-0432
Part of ISSN: 1557-3265
Source: Self-asserted source
Yuan Liu

Risk Factors of Cerebral Infarction and Myocardial Infarction after Carotid Endarterectomy Analyzed by Machine Learning

Computational and Mathematical Methods in Medicine
2020-11-12 | Journal article
DOI: 10.1155/2020/6217392
Contributors: Peng Bai; Yang Zhou; Yuan Liu; Gang Li; Zhengqian Li; Tao Wang; Xiangyang Guo; Giancarlo Ferrigno
Source: check_circle
Crossref

Chemical Proteomic Profiling of Protein 4′‐Phosphopantetheinylation in Mammalian Cells

Angewandte Chemie International Edition
2020-09-07 | Journal article
DOI: 10.1002/anie.202004105
Contributors: Nan Chen; Yuan Liu; Yuanpei Li; Chu Wang
Source: check_circle
Crossref

Chemical Proteomic Profiling of Protein 4′‐Phosphopantetheinylation in Mammalian Cells

Angewandte Chemie
2020-09-07 | Journal article
DOI: 10.1002/ange.202004105
Contributors: Nan Chen; Yuan Liu; Yuanpei Li; Chu Wang
Source: check_circle
Crossref

Chemoproteomic Profiling of Itaconation by Bioorthogonal Probes in Inflammatory Macrophages.

Journal of the American Chemical Society
2020-06-11 | Journal article
DOI: 10.1021/jacs.9b11962
PMID: 32496768
Source: Self-asserted source
Yuan Liu

Identification of the AMA Synthase from the Aspergillomarasmine A Biosynthesis and Evaluation of Its Biocatalytic Potential

ACS Catalysis
2020-06-05 | Journal article
DOI: 10.1021/acscatal.0c01187
Part of ISSN: 2155-5435
Part of ISSN: 2155-5435
Source: Self-asserted source
Yuan Liu

Predicting cracks in metalloproteins

Nature Machine Intelligence
2019-12 | Journal article
DOI: 10.1038/s42256-019-0128-y
Part of ISSN: 2522-5839
Source: Self-asserted source
Yuan Liu

Site-specific chemoproteomic profiling of targets of glyoxal

Future Medicinal Chemistry
2019-12 | Journal article
DOI: 10.4155/fmc-2019-0221
Part of ISSN: 1756-8919
Part of ISSN: 1756-8927
Source: Self-asserted source
Yuan Liu

S-glycosylation-based cysteine profiling reveals regulation of glycolysis by itaconate

Nature Chemical Biology
2019-10-22 | Journal article
DOI: 10.1038/s41589-019-0323-5
Contributors: Wei Qin; Ke Qin; Yanling Zhang; Wentong Jia; Ying Chen; Bo Cheng; Linghang Peng; Nan Chen; Yuan Liu; Wen Zhou et al.
Source: check_circle
Crossref

Generating the conformational properties of a polymer by the restricted Boltzmann machine

The Journal of Chemical Physics
2019-07-21 | Journal article
DOI: 10.1063/1.5103210
Contributors: Wancheng Yu; Yuan Liu; Yuguo Chen; Ying Jiang; Jeff Z. Y. Chen
Source: check_circle
Crossref

Time-resolved protein activation by proximal decaging in living systems

Nature
2019-05 | Journal article
DOI: 10.1038/s41586-019-1188-1
Part of ISSN: 0028-0836
Part of ISSN: 1476-4687
Source: Self-asserted source
Yuan Liu

Quantitative and Site-Specific Chemoproteomic Profiling of Targets of Acrolein

Chemical Research in Toxicology
2019-03-18 | Journal article
DOI: 10.1021/acs.chemrestox.8b00343
Part of ISSN: 0893-228X
Part of ISSN: 1520-5010
Source: Self-asserted source
Yuan Liu

Artificial Cysteine S-Glycosylation Induced by Per-O-Acetylated Unnatural Monosaccharides during Metabolic Glycan Labeling

Angewandte Chemie
2018 | Journal article
Source: Self-asserted source
Yuan Liu

Chemical proteomic profiling of protein N-homocysteinylation with a thioester probe

Chemical science
2018 | Journal article
Source: Self-asserted source
Yuan Liu

Chemoproteomics reveals baicalin activates hepatic CPT1 to ameliorate diet-induced obesity and hepatic steatosis

Proceedings of the National Academy of Sciences
2018 | Journal article
Source: Self-asserted source
Yuan Liu

Quantitative Profiling of Protein Carbonylations in Ferroptosis by an Aniline-Derived Probe

Journal of the American Chemical Society
2018 | Journal article
Source: Self-asserted source
Yuan Liu

Sequence-Based Prediction of Cysteine Reactivity Using Machine Learning

Biochemistry
2017 | Journal article
Source: Self-asserted source
Yuan Liu

Improved de novo structure prediction in CASP 11 by incorporating coevolution information into Rosetta

Proteins: Structure, Function, and Bioinformatics
2016 | Journal article
Source: Self-asserted source
Yuan Liu

Simultaneous optimization of biomolecular energy functions on features from small molecules and macromolecules

Journal of chemical theory and computation
2016 | Journal article
Source: Self-asserted source
Yuan Liu

Structure Prediction using sparse simulated NOE restraints with Rosetta in CASP11

Proteins: Structure, Function, and Bioinformatics
2016 | Journal article
Source: Self-asserted source
Yuan Liu

高分子纳米复合材料拉伸及压缩的分子动力学模拟

高分子学报
2014 | Journal article
Source: Self-asserted source
Yuan Liu

DISSIPATIVE PARTICLE DYNAMICS SIMULATION ON THE EFFECT OF LINE TENSION ON BENDING RIGIDITY OF BILAYER MEMBRANES

Acta Polymerica Sinica
2013 | Journal article
DOI: 10.3724/sp.j.1105.2013.12341
WOSUID:

WOS:000318197100021
Contributors: Liu, Y.; Liang, H. J.
Source: Self-asserted source
Yuan Liu via ResearcherID

Canonical and micro-canonical analysis of folding of trpzip2: An all-atom replica exchange Monte Carlo simulation study

The Journal of chemical physics
2012 | Journal article
WOSUID:

MEDLINE:22852659
Contributors: Liu, Yuan; Kellogg, Elizabeth; Liang, Haojun
Source: Self-asserted source
Yuan Liu via ResearcherID

Impact of hydrogen bonding on inclusion layer of urea to cellulose: Study of molecular dynamics simulation

Polymer
2012 | Journal article
DOI: 10.1016/j.polymer.2012.01.008
WOSUID:

WOS:000301098100013
Contributors: Cai, Lu; Liu, Yuan; Liang, Haojun
Source: Self-asserted source
Yuan Liu via ResearcherID

Theoretical investigation of the proton transfer mechanism in guanine-cytosine and adenine-thymine base pairs

Journal of Chemical Physics
2012 | Journal article
DOI: 10.1063/1.4766319
WOSUID:

WOS:000311458900051
Contributors: Xiao, S. Y.; Wang, L.; Liu, Y.; Lin, X. S.; Liang, H. J.
Source: Self-asserted source
Yuan Liu via ResearcherID

Flow-induced translocation of polymers through a fluidic channel: A dissipative particle dynamics simulation study

Journal of Chemical Physics
2011 | Journal article
DOI: 10.1063/1.3578180
WOSUID:

WOS:000289256100037
Contributors: Guo, Jiayi; Li, Xuejin; Liu, Yuan; Liang, Haojun
Source: Self-asserted source
Yuan Liu via ResearcherID

Canonical and microcanonical analysis of nongrafted homopolymer adsorption by an attractive substrate

Journal of Chemical Physics
2009 | Journal article
DOI: 10.1063/1.3273418
WOSUID:

WOS:000273217000068
Contributors: Wang, Lei; Chen, Tao; Lin, Xiangsong; Liu, Yuan; Liang, Haojun
Source: Self-asserted source
Yuan Liu via ResearcherID

Fusion and fission pathways of vesicles from amphiphilic triblock copolymers: a dissipative particle dynamics simulation study

Physical Chemistry Chemical Physics
2009 | Journal article
DOI: 10.1039/b817773b
WOSUID:

WOS:000266065400029
Contributors: Li, Xuejin; Liu, Yuan; Wang, Lei; Deng, Mingge; Liang, Haojun
Source: Self-asserted source
Yuan Liu via ResearcherID

Microcanonical analysis of adsorption of homopolymer chain on a surface

Journal of Chemical Physics
2009 | Journal article
DOI: 10.1063/1.3157255
WOSUID:

WOS:000267600400045
Contributors: Chen, Tao; Wang, Lei; Lin, Xiangsong; Liu, Yuan; Liang, Haojun
Source: Self-asserted source
Yuan Liu via ResearcherID

Microphase separation of diblock copolymer poly(styrene-b-isoprene): A dissipative particle dynamics simulation study

Journal of Chemical Physics
2009 | Journal article
DOI: 10.1063/1.3077865
WOSUID:

WOS:000263599300041
Contributors: Li, Xuejin; Guo, Jiayi; Liu, Yuan; Liang, Haojun
Source: Self-asserted source
Yuan Liu via ResearcherID

Structure of a Tubular Membrane Confining Spherical Particles

Physical Review Letters
2009 | Journal article
DOI: 10.1103/PhysRevLett.102.168103
WOSUID:

WOS:000265479300075
Contributors: Chen, Jeff Z. Y.; Liu, Yuan; Liang, H. -J.
Source: Self-asserted source
Yuan Liu via ResearcherID

Dissipative Particle Dynamics Simulations of Toroidal Structure Formations of Amphiphilic Triblock Copolymers

Journal of Physical Chemistry B
2008 | Journal article
DOI: 10.1021/jp803948j
WOSUID:

WOS:000261056400011
Contributors: Li, Xuejin; Deng, Mingge; Liu, Yuan; Liang, Haojun
Source: Self-asserted source
Yuan Liu via ResearcherID

Microcanonical analyses of homopolymer aggregation processes

Physical Review E
2008 | Journal article
DOI: 10.1103/PhysRevE.78.056101
WOSUID:

WOS:000261213800009
Contributors: Chen, Tao; Lin, Xiangsong; Liu, Yuan; Lu, Teng; Liang, Haojun
Source: Self-asserted source
Yuan Liu via ResearcherID

Microcanonical analysis of association of hydrophobic segments in a heteropolymer

Physical Review E
2007 | Journal article
DOI:

046110 Artn 046110

WOSUID:

ISI:000250622100018
Contributors: Chen, T.; Lin, X.; Liu, Y.; Liang, H.
Source: Self-asserted source
Yuan Liu via ResearcherID
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