Personal information

Biography

Christophe Godin received the engineer degree from the Special School of Civil Engineering in Paris, France, in 1986, the PhD degree in complex systems control from the Technological University of Compiègne, France, in 1990, and the Habilitation degree in computer science from the University of Montpellier, France, in 2003.

After the PhD degree in speech recognition hosted at the Marcoussis Laboratories of Alcatel-Alsthom Research near Paris, he did a postdoctoral fellowship in robotics in 1990, still at Marcoussis Laboratories. He was then a project leader at Cap Gemini Innovation, research center of Cap Gemini Sogeti in Paris, in the domain of Language Processing from 1991 to 1992. In 1993, he joined the research group AMAP at CIRAD, Montpellier, France, to develop a research program on plant growth modeling and analysis. In 2003, he joined the French national research institute for the digital sciences (INRIA) as a research director. He was the head of the INRIA Team Virtual Plants, joint with CIRAD and INRA in Montpellier from 2006 to 2017. in 2018, he then moved to at the Laboratoire de Reproduction de Plantes (RDP) at ENS de Lyon to create the Inria team MOSAIC on the modeling of morphogenesis.

His research interests include modeling and simulation in developmental biology, modeling of plant and animal development, 3D modeling of organs and branching systems, models of tissue development, multiscale modeling, regulatory networks, dynamical systems with dynamical structures, differential geometry, fractals, L-systems, stochastic processes, graph theory, and the design of computer platforms for simulation in biology.

Activities

Employment (5)

Institut national de recherche en informatique et en automatique (INRIA): Lyon, FR

Employment
Source: Self-asserted source
Christophe Godin

Inria Centre de Recherche Grenoble Rhone-Alpes: Montbonnot, Rhône-Alpes, FR

2018-01-01 to present | Research Director (Mosaic team, RDP, ENS de Lyon)
Employment
Source: Self-asserted source
Christophe Godin

Inria Centre de Recherche Sophia Antipolis Méditerranée: Sophia Antipolis, Provence-Alpes-Côte d'Azu, FR

2003-10-01 to 2017-12-31 | Research Director (Virtual Plants Team, Montpellier)
Employment
Source: Self-asserted source
Christophe Godin

CIRAD Département Systèmes biologiques: Montpellier, Languedoc-Roussillon, FR

1993-01-01 to 2003-09-30 | Researcher, Head of Computer Science and applied mathematics transversal theme (AMAP Researh Unit)
Employment
Source: Self-asserted source
Christophe Godin

Cap Gemini SA: Paris, Île-de-France, FR

1990-07-01 to 1992-12-31 | Project manager (Innovation (Paris))
Employment
Source: Self-asserted source
Christophe Godin

Education and qualifications (3)

Université de Montpellier: Montpellier, Languedoc-Roussillon, FR

2002-01 to 2003-06 | Habilitation (HDR) (Computer Science)
Education
Source: Self-asserted source
Christophe Godin

Université de Technologie de Compiègne: Compiegne, Île-de-France, FR

1986-10 to 1990-05 | PhD (in Systems Control) (Marcoussis Laboratories (CIFRE))
Education
Source: Self-asserted source
Christophe Godin

Ecole Spéciale des Travaux Publics du Bâtiment et de l'Industrie: Cachan, Île-de-France, FR

1984-10-01 to 1986 | Engineer
Education
Source: Self-asserted source
Christophe Godin

Works (50 of 172)

Items per page:
Page 1 of 4

Cauliflowers or how the perseverance of a plant to make flowers produces an amazing fractal structure

Comptes Rendus. Biologies
2023 | Journal article
Part of ISSN: 1768-3238
Contributors: Azpeitia, Eugenio; Parcy, François; Godin, Christophe
Source: Self-asserted source
Christophe Godin

Characterization of random walks on space of unordered trees using efficient metric simulation

Discrete Applied Mathematics
2023 | Journal article
Part of ISSN: 0166-218X
Contributors: Naoum, Farah Ben; Godin, Christophe; Azaïs, Romain
Source: Self-asserted source
Christophe Godin

A graph-based approach for simultaneous semantic and instance segmentation of plant 3D point clouds

Frontiers in Plant Science
2022 | Journal article
Contributors: Mirande, Katia; Godin, Christophe; Tisserand, Marie; Charlaix, Julie; Besnard, Fabrice; Hétroy-Wheeler, Franck
Source: Self-asserted source
Christophe Godin

Introduction to Computational Modeling of MulticellularTissues

Plant Systems Biology: Methods and Protocols
2022 | Book chapter
Part of ISBN: 9781071618141
Contributors: Dinh, Jean-Louis; Godin, Christophe; Azpeitia,; Eugenio; Lucas, Mikael
Source: Self-asserted source
Christophe Godin
grade
Preferred source (of 2)‎

Les mystères biologiques de la formation des choux-fleurs

La Recherche
2022 | Journal article
Contributors: Godin, Christophe
Source: Self-asserted source
Christophe Godin

Phenotyping and modeling of root hydraulic architecture reveal critical determinants of axial water transport

Plant Physiology
2022 | Journal article
Part of ISSN: 0032-0889
Contributors: Boursiac, Yann; Pradal, Christophe; Bauget, Fabrice; Lucas, Mikaël; Delivorias, Stathis; Godin, Christophe; Maurel, Christophe
Source: Self-asserted source
Christophe Godin

Post-transcriptional regulation of transcription factor codes in immature neurons drives neuronal diversity

Cell Reports
2022 | Journal article
Part of ISSN: 2211-1247
Contributors: Guan, Wenyue; Bellemin, Stéphanie; Bouchet, Mathilde; Venkatasubramanian, Lalanti; Guillermin, Camille; Laurençon, Anne; Kabir, Chérif; Darnas, Aurélien; Godin, Christophe; Urdy, Séverine et al.
Source: Self-asserted source
Christophe Godin
grade
Preferred source (of 2)‎

Organ geometry channels reproductive cell fate in the Arabidopsis ovule primordium

eLife
2021 | Journal article
Contributors: Hernandez-Lagana, Elvira; Mosca, Gabriella; Mendocilla-Sato, Ethel; Pires, Nuno; Frey, Anja; Giraldo-Fonseca, Alejandro; Michaud, Caroline; Grossniklaus, Ueli; Hamant, Olivier; Godin, Christophe et al.
Source: Self-asserted source
Christophe Godin

Cauliflower fractal forms arise from perturbations of floral gene networks.

Science
2021-07 | Journal article
Part of ISSN: 1095-9203
Contributors: Azpeitia, Eugenio; Tichtinsky, Gabrielle; Masson, Marie Le; Serrano-Mislata, Antonio; Lucas, Jérémy; Gregis, Veronica; Gimenez, Carlos; Prunet, Nathanaël; Farcot, Etienne; Kater, Martin M et al.
Source: Self-asserted source
Christophe Godin

What shoots can teach about theories of plant form

Nature Plants
2021-06 | Journal article
Contributors: Vernoux, Teva; Besnard, Fabrice; Godin, Christophe
Source: Self-asserted source
Christophe Godin

BVPy: A FEniCS-based Python package to ease the expression and study of boundary value problems in Biology.

2021-03 | Journal article
Contributors: Gacon, Florian; Godin, Christophe; Ali, Olivier; ali
Source: Self-asserted source
Christophe Godin

A multiscale analysis of early flower development in Arabidopsis provides an integrated view of molecular regulation and growth control.

Developmental Cell
2021-02 | Journal article
Contributors: Refahi, Yassin; Zardilis, Argyris; Michelin, Gaël; Wightman, Raymond; Leggio, Bruno; Legrand, Jonathan; Faure, Emmanuel; Vachez, Laetitia; Armezzani, Alessia; Risson, Anne-Evodie et al.
Source: Self-asserted source
Christophe Godin

Bipartite non-locality beyond Bell inequalities by means of multivariable correlations

arXiv
2020 | Journal article
Contributors: Leggio, Bruno; Bellomo, Bruno; Azaïs, Romain; Prusinkiewicz, Przemysław; Godin, Christophe
Source: Self-asserted source
Christophe Godin

Cellular heterogeneity in pressure and growth emerges from tissue topology and geometry

Current Biology
2020 | Journal article
Source: Self-asserted source
Christophe Godin

Contact area--dependent cell communication and the morphological invariance of ascidian embryogenesis

Science
2020 | Journal article
Source: Self-asserted source
Christophe Godin

Skeletonization of Plant Point Cloud Data Using Stochastic Optimization Framework

Frontiers in Plant Science
2020 | Journal article
Source: Self-asserted source
Christophe Godin

Sugar availability suppresses the auxin-induced strigolactone pathway to promote bud outgrowth

New Phytologist
2020 | Journal article
Source: Self-asserted source
Christophe Godin

Temporal integration of auxin information for the regulation of patterning

eLife
2020 | Journal article
Source: Self-asserted source
Christophe Godin

Cortical tension overrides geometrical cues to orient microtubules in confined protoplasts.

Proceedings of the National Academy of Sciences of the United States of America
2020-12 | Journal article
Contributors: Colin, Leia; Chevallier, Antoine; Tsugawa, Satoru; Gacon, Florian; Godin, Christophe; Viasnoff, Virgile; Saunders, Timothy E; Hamant, Olivier
Source: Self-asserted source
Christophe Godin

Phyllotaxis as geometric canalization during plant development

Development
2020-10 | Journal article
Part of ISSN: 0950-1991
Contributors: Godin, Christophe; Golé, Christophe; Douady, Stéphane
Source: Self-asserted source
Christophe Godin

Microtubule-Mediated Wall Anisotropy Contributes to Leaf Blade Flattening

Current biology
2020-09 | Journal article
Contributors: Zhao, Feng; Du, Fei; Oliveri, Hadrien; Zhou, Lüwen; Ali, Olivier; Chen, Wenqian; Feng, Shiliang; Wang, Qingqing; Lü, Shouqin; Long, Mian et al.
Source: Self-asserted source
Christophe Godin

Coupling water fluxes with cell wall mechanics in a multicellular model of plant development

PLoS computational biology
2019 | Journal article
Source: Self-asserted source
Christophe Godin

Gillespie and his Algorithms and Special Issue: Multiscale Modelling of Tissue Growth and Shape Introduction

2019 | Other
Source: Self-asserted source
Christophe Godin

Light regulation of axillary bud outgrowth along plant axes: an overview of the roles of sugars and hormones

Frontiers in plant science
2019 | Journal article
Source: Self-asserted source
Christophe Godin

MorphoNet: an interactive online morphological browser to explore complex multi-scale data

Nature communications
2019 | Journal article
Source: Self-asserted source
Christophe Godin

Regulation of plant cell wall stiffness by mechanical stress: a mesoscale physical model

Journal of mathematical biology
2019 | Journal article
Source: Self-asserted source
Christophe Godin

Simulating Turgor-Induced Stress Patterns in Multilayered Plant Tissues

Bulletin of mathematical biology
2019 | Journal article
Source: Self-asserted source
Christophe Godin

Plant architecture modelling: virtual plants and complex systems

Annual Plant Reviews online
2018 | Journal article
Source: Self-asserted source
Christophe Godin

Quand les plantes font des maths

Pour La Science
2018 | Magazine article
DOI:

papers3://publication/uuid/0B496E0F-5456-4C34-AFFA-A3935DE1A63D

Contributors: Vernoux, Teva; Godin, Christophe; Besnard, Fabrice
Source: Self-asserted source
Christophe Godin via ResearcherID

DRACO-STEM: An Automatic Tool to Generate High-Quality 3D Meshes of Shoot Apical Meristem Tissue at Cell Resolution

Frontiers in plant science
2017 | Journal article
WOSUID:

WOS:000397517100001

Contributors: Cerutti, Guillaume; Ali, Olivier; Godin, Christophe
Source: Self-asserted source
Christophe Godin via ResearcherID

Modelling Curvature Effects Using L-Systems: From Discrete and Deterministic to Continuous and Stochastic

International Conference on Theory and Practice of Natural Computing
2017 | Conference paper
Source: Self-asserted source
Christophe Godin

A multi-scale model of the interplay between cell signalling and hormone transport in specifying the root meristem of Arabidopsis thaliana

Journal of Theoretical Biology
2016 | Journal article
WOSUID:

WOS:000380621300017

Contributors: Muraro, D.; Larrieu, A.; Lucas, M.; Chopard, J.; Byrne, H.; Godin, Christophe; King, J.
Source: Self-asserted source
Christophe Godin via ResearcherID

A stochastic multicellular model identifies biological watermarks from disorders in self-organized patterns of phyllotaxis

eLife
2016 | Journal article
WOSUID:

WOS:000380279100001

Contributors: Refahi, Yassin; Brunoud, Géraldine; Farcot, Etienne; Jean-Marie, Alain; Pulkkinen, Minna; Vernoux, Teva; Godin, Christophe
Source: Self-asserted source
Christophe Godin via ResearcherID

Algorithmic height compression of unordered trees

Journal of Theoretical Biology
2016 | Journal article
WOSUID:

WOS:000367213300023

Contributors: Ben-Naoum, Farah; Godin, Christophe
Source: Self-asserted source
Christophe Godin via ResearcherID

An introduction to modeling the initiation of the floral primordium

From Molecules to Living Organisms An Interplay Between Biology and Physics
2016 | Book chapter
DOI:

papers3://publication/uuid/8194F05D-0B55-4D33-8BD9-DD3F60255473

WOSUID:

WOS:000391254100009

Contributors: Godin, Christophe; Azpeitia, Eugenio; Farcot, Etienne
Source: Self-asserted source
Christophe Godin via ResearcherID

Integrating Physiology and Architecture in Models of Fruit Expansion

Frontiers in plant science
2016 | Journal article
WOSUID:

WOS:000388037800001

Contributors: Cieslak, Mikolaj; Cheddadi, Ibrahim; Boudon, Frédéric; Baldazzi, Valentina; Génard, Michel; Godin, Christophe; Bertin, Nadia
Source: Self-asserted source
Christophe Godin via ResearcherID

Lossy compression of trees via linear directed acyclic graphs

2016 | Journal article
DOI:

papers3://publication/uuid/791B06FB-4A7A-4862-952F-6D3DD1CA4A3B

Contributors: Azais, Romain; Durand, Jean-Baptiste; Godin, Christophe
Source: Self-asserted source
Christophe Godin via ResearcherID

Phyllotaxis: from patterns of organogenesis at the meristem to shoot architecture

Wiley Interdisciplinary Reviews: Developmental Biology
2016 | Journal article
WOSUID:

WOS:000378751700003

Contributors: Galván-Ampudia, Carlos S.; Chaumeret, Anaïs M.; Godin, Christophe; Vernoux, Teva
Source: Self-asserted source
Christophe Godin via ResearcherID

A Computational Framework for 3D Mechanical Modeling of Plant Morphogenesis with Cellular Resolution

PLoS computational biology
2015 | Journal article
Contributors: Boudon, Frédéric; Chopard, Jérôme; Ali, Olivier; Gilles, Benjamin; Hamant, Olivier; Boudaoud, Arezki; Traas, Jan; Godin, Christophe
Source: Self-asserted source
Christophe Godin via ResearcherID

L'importance capitale du travail de fourmi des chercheurs

1024 - Bulletin de la société informatique de France
2015 | Journal article
DOI:

papers3://publication/uuid/ADF0D655-91DE-4797-9FB9-4D1A67AE0969

Contributors: Godin, Christophe
Source: Self-asserted source
Christophe Godin via ResearcherID

Meshing Meristems-An Iterative Mesh Optimization Method for Modeling Plant Tissue at Cell Resolution

BIOIMAGING
2015 | Journal article
DOI:

papers3://publication/uuid/BDEA4E7B-AFB6-455A-8A2F-0A0A74848568

Contributors: Cerutti, G.; Godin, Christophe
Source: Self-asserted source
Christophe Godin via ResearcherID

Root system markup language: toward a unified root architecture description language

Plant Physiol
2015 | Journal article
Contributors: Lobet, Guillaume; Pound, Michael P.; Diener, Julien; Pradal, Christophe; Draye, Xavier; Godin, Christophe; Javaux, Mathieu; Leitner, Daniel; Meunier, Félicien; Nacry, Philippe et al.
Source: Self-asserted source
Christophe Godin via ResearcherID

An Auxin-Mediated Shift toward Growth Isotropy Promotes Organ Formation at the Shoot Meristem in Arabidopsis

Current biology
2014 | Journal article
Contributors: Sassi, Massimiliano; Ali, Olivier; Boudon, Frédéric; Cloarec, Gladys; Abad, Ursula; Cellier, Coralie; Chen, Xu; Gilles, Benjamin; Milani, Pascale; Friml, Jiri et al.
Source: Self-asserted source
Christophe Godin via ResearcherID

Cytokinin signalling inhibitory fields provide robustness to phyllotaxis

Nature
2014 | Journal article
Contributors: Besnard, Fabrice; Refahi, Yassin; Morin, Valérie; Marteaux, Benjamin; Brunoud, Géraldine; Chambrier, Pierre; Rozier, Frédérique; Mirabet, Vincent; Legrand, Jonathan; Lainé, Stéphanie et al.
Source: Self-asserted source
Christophe Godin via ResearcherID

Functional-structural plant models: a growing paradigm for plant studies

Annals of Botany
2014 | Journal article
Contributors: Sievänen, Risto; Godin, Christophe; DeJong, Theodore M.; Nikinmaa, Eero
Source: Self-asserted source
Christophe Godin via ResearcherID

Integration of hormonal signaling networks and mobile microRNAs is required for vascular patterning in Arabidopsis roots

Proceedings of the National Academy of Sciences of the United States of America
2014 | Journal article
Contributors: Muraro, Daniele; Mellor, Nathan; Pound, Michael P.; Help, Hanna; Lucas, Mikael; Chopard, Jérôme; Byrne, Helen M.; Godin, Christophe; Hodgman, T. Charlie; King, John R. et al.
Source: Self-asserted source
Christophe Godin via ResearcherID

Physical models of plant development

Annual review of cell and developmental biology
2014 | Journal article
Contributors: Ali, Olivier; Mirabet, Vincent; Godin, Christophe; Traas, Jan
Source: Self-asserted source
Christophe Godin via ResearcherID

Quantitative assessment of automatic reconstructions of branching systems obtained from laser scanning

Annals of Botany
2014 | Journal article
Contributors: Boudon, Frédéric; Preuksakarn, Chakkrit; Ferraro, Pascal; Diener, Julien; Nacry, Philippe; Nikinmaa, Eero; Godin, Christophe
Source: Self-asserted source
Christophe Godin via ResearcherID

Spatio-temporal registration of embryo images

Biomedical Imaging (ISBI), 2014 IEEE 11th International Symposium on
2014 | Journal article
Contributors: Guignard, L.; Godin, Christophe; Fiuza, U. M.; Hufnagel, L.; Lemaire, P.; Malandain, G.
Source: Self-asserted source
Christophe Godin via ResearcherID

Systems Analysis of Auxin Transport in the Arabidopsis Root Apex

The Plant cell
2014 | Journal article
Contributors: Band, L. R.; Wells, D. M.; Fozard, J. A.; Ghetiu, T.; French, A. P.; Pound, M. P.; Wilson, M. H.; Yu, L.; Li, W.; Hijazi, H. I. et al.
Source: Self-asserted source
Christophe Godin via ResearcherID
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Peer review (2 reviews for 2 publications/grants)

Review activity for American journal of botany. (1)
Review activity for Journal of plant research. (1)