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Bayesian statistics, Computational biology, Machine learning, Probabilistic graphical modelling
United Kingdom

Activities

Employment (4)

University of Glasgow: Glasgow, GB

(MVLS Research Facilities)
Employment
Source: check_circle
University of Glasgow

University of Glasgow: Glasgow, GB

2015-08-01 to present | Head of Data Analysis (Polyomics)
Employment
Source: Self-asserted source
Rónán Daly

Liverpool John Moores University: Liverpool, GB

2014-06-01 to 2015-07-31 | Lecturer (Computing and Mathematical Sciences)
Employment
Source: Self-asserted source
Rónán Daly

University of Glasgow: Glasgow, GB

2008-10-15 to 2014-06-01 | Research Associate (Computing Science)
Employment
Source: Self-asserted source
Rónán Daly

Education and qualifications (3)

University of Edinburgh: Edinburgh, GB

2003-10-01 to 2008-06-01 | PhD, Machine Learning (Informatics)
Education
Source: Self-asserted source
Rónán Daly

University of Edinburgh: Edinburgh, GB

2002-10-01 to 2003-10-01 | MSc, Artificial Intelligence (Informatics)
Education
Source: Self-asserted source
Rónán Daly

University of Dublin, Trinity College: Dublin, IE

1996-10-01 to 2000-06-01 | BAI, Computer Engineering
Education
Source: Self-asserted source
Rónán Daly

Funding (8)

Combatting antimicrobial resistance through new software for natural product discovery

2018-11-01 to 2020-04-29 | Grant
Biotechnology and Biological Sciences Research Council (Swindon, GB)
GRANT_NUMBER: BB/R022054/1
Source: Self-asserted source
Rónán Daly via DimensionsWizard

Closed-Loop Data Science for Complex, Computationally- and Data-Intensive Analytics

2018-04-30 to 2022-04-29 | Grant
Engineering and Physical Sciences Research Council (Swindon, GB)
GRANT_NUMBER: EP/R018634/1
Source: Self-asserted source
Rónán Daly via DimensionsWizard

The yeast polyome: Producing a reference dataset for omics integration

2018-03 to 2019-02 | Grant
Wellcome (London, GB)
GRANT_NUMBER:

105614/Z/14/Z/2

Source: Self-asserted source
Rónán Daly

FlyMet.org - a tissue-based metabolomic online resource for the Drosophila and systems biology communities

2018-01 to 2021-12 | Grant
Biotechnology and Biological Sciences Research Council (Swindon, GB)
GRANT_NUMBER:

BB/P024297/1

Source: Self-asserted source
Rónán Daly

A comparative multi-omics platform for accelerated antibiotic drug discovery from ancient Polar bacteria

2017 to 2018 | Grant
Carnegie Trust for the Universities of Scotland (Dunfermline, GB)
Source: Self-asserted source
Rónán Daly

In-silico quantification of metabolites, lipids and lipoproteins measured by NMR spectrometry

2016-05 to 2017-02 | Grant
Wellcome Trust (London, GB)
GRANT_NUMBER:

105614/Z/14/Z/1

Source: Self-asserted source
Rónán Daly

Enhanced interpretation of metabolomics data to accelerate microbial engineering.

Metabolomic systems biology: from numbers to networks

2009-04-01 to 2015-05-22 | Grant
Netherlands Organisation for Scientific Research (The Hague, NL)
GRANT_NUMBER: 864.08.002
Source: Self-asserted source
Rónán Daly via DimensionsWizard

Works (37)

On‐line targeted metabolomics for real‐time monitoring of relevant compounds in fermentation processes

Biotechnology and Bioengineering
2023-11-22 | Journal article
Part of ISSN: 1097-0290
Contributors: Joan Cortada Garcia; Jennifer Haggarty; Stefan Weidt; Rónán Daly; S. Alison Arnold; Karl Burgess
Source: Self-asserted source
Rónán Daly via Crossref Metadata Search

Streamlined identification of strain engineering targets for bioprocess improvement using metabolic pathway enrichment analysis

Scientific Reports
2023-08-10 | Journal article
Part of ISSN: 2045-2322
Contributors: Joan Cortada-Garcia; Rónán Daly; S. Alison Arnold; Karl Burgess
Source: Self-asserted source
Rónán Daly

TopNEXt: automatic DDA exclusion framework for multi-sample mass spectrometry experiments

Bioinformatics
2023-07-01 | Journal article
Contributors: Ross McBride; Joe Wandy; Stefan Weidt; Simon Rogers; Vinny Davies; Rónán Daly; Kevin Bryson; Janet Kelso
Source: check_circle
Crossref
grade
Preferred source (of 3)‎

Simulated-to-real Benchmarking of Acquisition Methods in Metabolomics

2023-01-15 | Preprint
Contributors: Joe Wandy; Ross McBride; Simon Rogers; Nikolaos Terzis; Stefan Weidt; Justin J.J. van der Hooft; Kevin Bryson; Rónán Daly; Vinny Davies
Source: check_circle
Crossref

Multi-omics & pathway analysis identify potential roles for tumor N-acetyl aspartate accumulation in murine models of castration-resistant prostate cancer

iScience
2022-04 | Journal article
Contributors: Mark J. Salji; Arnaud Blomme; J. Henry M. Däbritz; Peter Repiscak; Sergio Lilla; Rachana Patel; David Sumpton; Niels J.F. van den Broek; Ronan Daly; Sara Zanivan et al.
Source: check_circle
Crossref

ViMMS 2.0: A framework to develop, test and optimise fragmentation strategies in LC-MS metabolomics

Journal of Open Source Software
2022-03-30 | Journal article
Contributors: Joe Wandy; Vinny Davies; Ross McBride; Stefan Weidt; Simon Rogers; Rónán Daly
Source: check_circle
Crossref

GraphOmics: an interactive platform to explore and integrate multi-omics data

BMC Bioinformatics
2021-12 | Journal article
Contributors: Joe Wandy; Rónán Daly
Source: check_circle
Crossref

Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions

PLOS Computational Biology
2021-05-04 | Journal article
Contributors: Grímur Hjörleifsson Eldjárn; Niranjan Nagarajan; Andrew Ramsay; Justin J. J. van der Hooft; Katherine R. Duncan; Sylvia Soldatou; Juho Rousu; Rónán Daly; Joe Wandy; Simon Rogers
Source: check_circle
Crossref

Rapid Development of Improved Data-Dependent Acquisition Strategies

Analytical Chemistry
2021-04-13 | Journal article
Contributors: Vinny Davies; Joe Wandy; Stefan Weidt; Justin J. J. van der Hooft; Alice Miller; Rónán Daly; Simon Rogers
Source: check_circle
Crossref
grade
Preferred source (of 3)‎

A monolithic single-chip point-of-care platform for metabolomic prostate cancer detection

Microsystems & Nanoengineering
2021-03-05 | Journal article
Part of ISSN: 2055-7434
Contributors: Valerio F. Annese; Samadhan B. Patil; Chunxiao Hu; Christos Giagkoulovits; Mohammed A. Al-Rawhani; James Grant; Martin Macleod; David J. Clayton; Liam M. Heaney; Ronan Daly et al.
Source: Self-asserted source
Rónán Daly via Crossref Metadata Search

Ranking Metabolite Sets by Their Activity Levels

Metabolites
2021-02 | Journal article | Author
Contributors: Karen McLuskey; Joe Wandy; Isabel Vincent; Justin J.J. van der Hooft; Simon Rogers; Karl Burgess; Rónán Daly
Source: check_circle
Multidisciplinary Digital Publishing Institute
grade
Preferred source (of 4)‎

High sodium intake, glomerular hyperfiltration, and protein catabolism in patients with essential hypertension

Cardiovascular Research
2020-07 | Journal article
Part of ISSN: 0008-6363
Contributors: Giacomo Rossitto; Giuseppe Maiolino; Silvia Lerco; Giulio Ceolotto; Gavin Blackburn; Sheon Mary; Giorgia Antonelli; Chiara Berton; Valeria Bisogni; Maurizio Cesari et al.
Source: Self-asserted source
Rónán Daly via Crossref Metadata Search

R package for statistical inference in dynamical systems using kernel based gradient matching: KGode

Computational Statistics
2020-07 | Journal article
Part of ISSN: 0943-4062
Contributors: Mu Niu; Joe Wandy; Rónán Daly; Simon Rogers; Dirk Husmeier
Source: Self-asserted source
Rónán Daly via Crossref Metadata Search

Changes in Plasma Itaconate Elevation in Early Rheumatoid Arthritis Patients Elucidates Disease Activity Associated Macrophage Activation

Metabolites
2020-06 | Journal article | Author
Contributors: Rónán Daly; Gavin Blackburn; Cameron Best; Carl S. Goodyear; Manikhandan Mudaliar; Karl Burgess; Anne Stirling; Duncan Porter; Iain B. McInnes; Michael P. Barrett et al.
Source: check_circle
Multidisciplinary Digital Publishing Institute
grade
Preferred source (of 4)‎

Changing environments and genetic variation: natural variation in inbreeding does not compromise short-term physiological responses

Proceedings of the Royal Society B: Biological Sciences
2019-11-20 | Journal article
Contributors: James Buckley; Rónán Daly; Christina A. Cobbold; Karl Burgess; Barbara K. Mable
Source: check_circle
Crossref

In Silico Optimization of Mass Spectrometry Fragmentation Strategies in Metabolomics

Metabolites
2019-10-09 | Journal article
Part of ISSN: 2218-1989
Contributors: Joe Wandy; Vinny Davies; Justin J. J. van der Hooft; Stefan Weidt; Rónán Daly; Simon Rogers
Source: Self-asserted source
Rónán Daly
grade
Preferred source (of 2)‎

MetaboCraft: building a Minecraft plugin for metabolomics

Bioinformatics
2018-08-01 | Journal article
Part of ISSN: 1367-4803
Part of ISSN: 1460-2059
Source: Self-asserted source
Rónán Daly

ShinyKGode: an interactive application for ODE parameter inference using gradient matching

Bioinformatics
2018-07-01 | Journal article
Part of ISSN: 1367-4803
Part of ISSN: 1460-2059
Source: Self-asserted source
Rónán Daly

MetaNetter 2: A Cytoscape plugin for ab initio network analysis and metabolite feature classification

Journal of Chromatography B
2017 | Journal article
Source: Self-asserted source
Rónán Daly

Ms2lda. org: web-based topic modelling for substructure discovery in mass spectrometry

Bioinformatics
2017 | Journal article
Source: Self-asserted source
Rónán Daly

PiMP my metabolome: an integrated, web-based tool for LC-MS metabolomics data

Bioinformatics
2017 | Journal article
Source: Self-asserted source
Rónán Daly

HDP-Align: Hierarchical Dirichlet Process Clustering for Multiple Peak Alignment of Liquid Chromatography Mass Spectrometry Data.

bioRxiv
2016 | Journal article
Source: Self-asserted source
Rónán Daly

Metabolomics Identifies Multiple Candidate Biomarkers to Diagnose and Stage Human African Trypanosomiasis

PLOS Neglected Tropical Diseases
2016 | Journal article
Source: Self-asserted source
Rónán Daly

Incorporating peak grouping information for alignment of multiple liquid chromatography-mass spectrometry datasets

Bioinformatics
2015 | Journal article
Source: Self-asserted source
Rónán Daly

MetAssign: probabilistic annotation of metabolites from LC--MS data using a Bayesian clustering approach

Bioinformatics
2014 | Journal article
Source: Self-asserted source
Rónán Daly

Quantification of functionalised gold nanoparticle-targeted knockdown of gene expression in HeLa cells

2014 | Journal article
Source: Self-asserted source
Rónán Daly

Mixture model clustering for peak filtering in metabolomics

Ninth International Workshop on Computational Systems Biology
2012 | Conference paper
Source: Self-asserted source
Rónán Daly

Unique reporter-based sensor platforms to monitor signalling in cells

2012 | Journal article
Source: Self-asserted source
Rónán Daly

Learning Bayesian networks: Approaches and issues

The Knowledge Engineering Review
2011 | Journal article
Source: Self-asserted source
Rónán Daly

The Renilla luciferase gene as a reference gene for normalization of gene expression in transiently transfected cells

BMC molecular biology
2010 | Journal article
Source: Self-asserted source
Rónán Daly

Learning Bayesian network equivalence classes with ant colony optimization

Journal of Artificial Intelligence Research
2009 | Journal article
Source: Self-asserted source
Rónán Daly

Using Higher-Order Dynamic Bayesian Networks to Model Periodic Data from the Circadian Clock of Arabidopsis Thaliana

Proceedings of the Fourth IAPR International Conference on Pattern Recognition in Bioinformatics (PRIB 2009)
2009 | Conference paper
Source: Self-asserted source
Rónán Daly

Methods to accelerate the learning of bayesian network structures

UK workshop on Computational Intelligence
2007 | Conference paper
Source: Self-asserted source
Rónán Daly

Speeding up the learning of equivalence classes of Bayesian network structures

2006 | Journal article
Source: Self-asserted source
Rónán Daly

Using Ant Colony Optimisation in Learning Bayesian Network Equivalence Classes

UK Workshop on Computational Intelligence
2006 | Conference paper
Source: Self-asserted source
Rónán Daly

A Framework for the Scoring of Operators on the Search Space of Equivalence Classes of Bayesian Network Structures

Proceedings of the 2005 UK Workshop on Computational Intelligence
2005 | Conference paper
Source: Self-asserted source
Rónán Daly

Inferring gene regulatory networks from classified microarray data: Initial results

BMC Bioinformatics
2005 | Journal article
Source: Self-asserted source
Rónán Daly

Peer review (1 review for 1 publication/grant)

Review activity for Metabolites. (1)