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Works (13)

On the Overflow and p-adic Theory Applied to Homomorphic Encryption

2025 | Book chapter
Contributors: Jacob Blindenbach; Jung Hee Cheon; Gamze Gürsoy; Jiayi Kang
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Secure and federated quantitative trait loci mapping with privateQTL

Cell Genomics
2025-02 | Journal article
Contributors: Yoolim Annie Choi; Yebin Kim; Peihan Miao; Tuuli Lappalainen; Gamze Gürsoy
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SQUiD: ultra-secure storage and analysis of genetic data for the advancement of precision medicine

Genome Biology
2024-12-18 | Journal article
Contributors: Jacob Blindenbach; Jiayi Kang; Seungwan Hong; Caline Karam; Thomas Lehner; Gamze Gürsoy
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Privacy-preserving model evaluation for logistic and linear regression using homomorphically encrypted genotype data

Journal of Biomedical Informatics
2024-08 | Journal article
Contributors: Seungwan Hong; Yoolim A. Choi; Daniel S. Joo; Gamze Gürsoy
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Security Vulnerabilities and Countermeasures for the Biomedical Data Life Cycle

2023 | Book chapter
Contributors: Eric Ni; Gamze Gürsoy; Mark Gerstein
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Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases

Genome Research
2023-12 | Journal article
Contributors: Prashant S. Emani; Maya N. Geradi; Gamze Gürsoy; Monica R. Grasty; Andrew Miranker; Mark B. Gerstein
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LDmat: efficiently queryable compression of linkage disequilibrium matrices

Bioinformatics
2023-02-03 | Journal article
Contributors: Rockwell J Weiner; Chirag Lakhani; David A Knowles; Gamze Gürsoy; Christina Kendziorski
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Recurrent repeat expansions in human cancer genomes

Nature
2023-01-05 | Journal article
Contributors: Graham S. Erwin; Gamze Gürsoy; Rashid Al-Abri; Ashwini Suriyaprakash; Egor Dolzhenko; Kevin Zhu; Christian R. Hoerner; Shannon M. White; Lucia Ramirez; Ananya Vadlakonda et al.
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A genome-wide atlas of recurrent repeat expansions in human cancer

2022-08-24 | Preprint
Contributors: Graham S. Erwin; Gamze Gürsoy; Rashid Al-Abri; Ashwini Suriyaprakash; Egor Dolzhenko; Kevin Zhu; Christian R. Hoerner; Shannon M. White; Lucia Ramirez; Ananya Vadlakonda et al.
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Author Correction: Functional genomics data: privacy risk assessment and technological mitigation

Nature Reviews Genetics
2022-04 | Journal article
Contributors: Gamze Gürsoy; Tianxiao Li; Susanna Liu; Eric Ni; Charlotte M. Brannon; Mark B. Gerstein
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Functional genomics data: privacy risk assessment and technological mitigation

Nature Reviews Genetics
2022-04 | Journal article
Contributors: Gamze Gürsoy; Tianxiao Li; Susanna Liu; Eric Ni; Charlotte M. Brannon; Mark B. Gerstein
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Assessing and mitigating privacy risk of sparse, noisy genotypes by local alignment to haplotype databases

2021-07-19 | Preprint
Contributors: Prashant S. Emani; Gamze Gürsoy; Andrew Miranker; Mark B. Gerstein
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Private information leakage from functional genomics data: Quantification with calibration experiments and reduction via data sanitization protocols

2018-06-12 | Other
Contributors: Gamze Gürsoy; Prashant Emani; Charlotte M. Brannon; Otto A. Jolanki; Arif Harmanci; J. Seth Strattan; Andrew D. Miranker; Mark Gerstein
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Crossref