Personal information

Emails & domains

Verified email domains

Websites & social links

Blekhman Lab
Bork Lab
Segata Lab

Keywords

Metagenomics, Computational biology, Microbial ecology, Infant microbiome, Baboon microbiome

Countries

United States, Germany, Italy

Activities

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Employment (4)

University of Chicago Medicine: IL, IL, US

2023-01 to present | Postdoctoral Research Scholar (Division of Biological Sciences)
Employment
Source: Self-asserted source
Pamela Ferretti

European Molecular Biology Laboratory: Heidelberg, Baden-Württemberg, DE

2021-12-15 to present | Postdoctoral Researcher (Structural and Computational Biology Unit)
Employment
Source: Self-asserted source
Pamela Ferretti

European Molecular Biology Laboratory: Heidelberg, Baden-Württemberg, DE

2017-09-05 to 2021-12-15 | PhD Student (Structural and Computational Biology Unit)
Employment
Source: Self-asserted source
Pamela Ferretti

Università degli Studi di Trento Dipartimento di Matematica: Trento, Trentino, IT

2016-05 to 2017-08-31 | Postgraduate Student (CIBIO - Centre for Integrative Biology)
Employment
Source: Self-asserted source
Pamela Ferretti

Education and qualifications (3)

EMBL: Heidelberg , DE

2017-09 to 2021-12 | PhD (Structural and Computational Unit)
Education
Source: Self-asserted source
Pamela Ferretti

Universita degli Studi di Trento: Trento, Trentino, IT

2014-09 to 2016-03 | Master of Science in Cellular and Molecular Biotechnology (CIBIO - Centre for Integrative Biology)
Education
Source: Self-asserted source
Pamela Ferretti

Universita degli Studi di Trento: Trento, trentino, IT

2011-09 to 2014-03 | Bachelor of Science in computer Science (Department of information engineering and computer science)
Education
Source: Self-asserted source
Pamela Ferretti

Professional activities (2)

International Society for Microbial Ecology - ISME18: Lausanne , CH

2022-08 | Poster Award
Distinction
Source: Self-asserted source
Pamela Ferretti

“The human Microbiome Symposium” organized by EMBL: Heidelberg, DE

2018-09 | Poster Award
Distinction
Source: Self-asserted source
Pamela Ferretti

Works (21)

Eukaryotic composition across seasons and social groups in the gut microbiota of wild baboons

2024-12-17 | Preprint
DOI: 10.1101/2024.12.17.628920
Contributors: Mary Chege; Pamela Ferretti; Shasta Webb; Rosaline W. Macharia; George Obiero; Joseph Kamau; Susan C. Alberts; Jenny Tung; Mercy Y. Akinyi; Elizabeth A Archie
Source: check_circle
Crossref

Fecal microbial load is a major determinant of gut microbiome variation and a confounder for disease associations

2024-03-18 | Preprint
DOI: 10.1101/2024.03.18.584290
Contributors: Suguru Nishijima; Evelina Stankevic; Oliver Aasmets; Thomas S. B. Schmidt; Naoyoshi Nagata; Marisa Isabell Keller; Pamela Ferretti; Helene Bæk Juel; Anthony Fullam; Shahriyar Mahdi Robbani et al.
Source: check_circle
Crossref

Assembly, stability, and dynamics of the infant gut microbiome are linked to bacterial strains and functions in mother’s milk

2024-01-28 | Preprint
DOI: 10.1101/2024.01.28.577594
Contributors: Mattea Allert; Pamela Ferretti; Kelsey E. Johnson; Timothy Heisel; Sara Gonia; Dan Knights; David A. Fields; Frank W. Albert; Ellen W. Demerath; Cheryl A. Gale et al.
Source: check_circle
Crossref

SPIRE: a Searchable, Planetary-scale mIcrobiome REsource

Nucleic Acids Research
2024-01-05 | Journal article
DOI: 10.1093/nar/gkad943
Contributors: Thomas S B Schmidt; Anthony Fullam; Pamela Ferretti; Askarbek Orakov; Oleksandr M Maistrenko; Hans-Joachim Ruscheweyh; Ivica Letunic; Yiqian Duan; Thea Van Rossum; Shinichi Sunagawa et al.
Source: check_circle
Crossref

C. difficile may be overdiagnosed in adults and is a prevalent commensal in infants

2023-09-12 | Preprint
DOI: 10.7554/eLife.90111
Contributors: Pamela Ferretti; Jakob Wirbel; Oleksandr M Maistrenko; Thea Van Rossum; Renato Alves; Anthony Fullam; Wasiu Akanni; Christian Schudoma; Anna Schwarz; Roman Thielemann et al.
Source: check_circle
Crossref

C. difficile may be overdiagnosed in adults and is a prevalent commensal in infants

2023-09-12 | Preprint
DOI: 10.7554/eLife.90111.1
Contributors: Pamela Ferretti; Jakob Wirbel; Oleksandr M Maistrenko; Thea Van Rossum; Renato Alves; Anthony Fullam; Wasiu Akanni; Christian Schudoma; Anna Schwarz; Roman Thielemann et al.
Source: check_circle
Crossref

C. difficilemay be overdiagnosed in adults and is a prevalent commensal in infants

2022-02-18 | Preprint
DOI: 10.1101/2022.02.16.480740
Contributors: Pamela Ferretti; Jakob Wirbel; Oleksandr M Maistrenko; Thea Van Rossum; Renato Alves; Anthony Fullam; Wasiu Akanni; Christian Schudoma; Anna Schwarz; Roman Thielemann et al.
Source: check_circle
Crossref

Meconium Microbiome of Very Preterm Infants across Germany

mSphere
2022-01-12 | Journal article
DOI: 10.1128/msphere.00808-21
Part of ISSN: 2379-5042
Source: Self-asserted source
Pamela Ferretti
grade
Preferred source (of 2)‎

Towards the biogeography of prokaryotic genes

Nature
2021-12-15 | Journal article
DOI: 10.1038/s41586-021-04233-4
Part of ISSN: 0028-0836
Part of ISSN: 1476-4687
Source: Self-asserted source
Pamela Ferretti

Dispersal strategies shape persistence and evolution of human gut bacteria

Cell Host & Microbe
2021-07 | Journal article
DOI: 10.1016/j.chom.2021.05.008
Part of ISSN: 1931-3128
Source: Self-asserted source
Pamela Ferretti

Metagenomic assessment of the global distribution of bacteria and fungi

Environmental Microbiology
2020-11-13 | Journal article
DOI: 10.1111/1462-2920.15314
Part of ISSN: 1462-2912
Part of ISSN: 1462-2920
Source: Self-asserted source
Pamela Ferretti

Diversity within species: interpreting strains in microbiomes

Nature Reviews Microbiology
2020-06-04 | Journal article
DOI: 10.1038/s41579-020-0368-1
Part of ISSN: 1740-1526
Part of ISSN: 1740-1534
Source: Self-asserted source
Pamela Ferretti

The short-term impact of probiotic consumption on the oral cavity microbiome

Scientific Reports
2018-12 | Journal article
DOI: 10.1038/s41598-018-28491-x
Part of ISSN: 2045-2322
Source: Self-asserted source
Pamela Ferretti

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome

Cell Host & Microbe
2018-07 | Journal article
DOI: 10.1016/j.chom.2018.06.005
Part of ISSN: 1931-3128
Source: Self-asserted source
Pamela Ferretti

Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life

Cell Host & Microbe
2018-07 | Journal article
DOI: 10.1016/j.chom.2018.06.007
Part of ISSN: 1931-3128
Source: Self-asserted source
Pamela Ferretti

Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission

Microbiome
2017-12 | Journal article
DOI: 10.1186/s40168-017-0282-6
Part of ISSN: 2049-2618
Source: Self-asserted source
Pamela Ferretti

Experimental metagenomics and ribosomal profiling of the human skin microbiome

Experimental Dermatology
2017-03 | Journal article
DOI: 10.1111/exd.13210
Part of ISSN: 0906-6705
Source: Self-asserted source
Pamela Ferretti

Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling

mSystems
2017-02-28 | Journal article
DOI: 10.1128/msystems.00164-16
Part of ISSN: 2379-5077
Source: Self-asserted source
Pamela Ferretti

Exploring Vertical Transmission of Bifidobacteria from Mother to Child

Applied and Environmental Microbiology
2015-10-15 | Journal article
DOI: 10.1128/aem.02037-15
Part of ISSN: 0099-2240
Part of ISSN: 1098-5336
Source: Self-asserted source
Pamela Ferretti

The new phylogenesis of the genus Mycobacterium

International Journal of Mycobacteriology
2015-03 | Journal article
DOI: 10.1016/j.ijmyco.2014.10.017
Part of ISSN: 2212-5531
Source: Self-asserted source
Pamela Ferretti

Characterization of 17 strains belonging to the Mycobacterium simiae complex and description of Mycobacterium paraense sp. nov.

International Journal of Systematic and Evolutionary Microbiology
2015-02-01 | Journal article
DOI: 10.1099/ijs.0.068395-0
Part of ISSN: 1466-5026
Part of ISSN: 1466-5034
Source: Self-asserted source
Pamela Ferretti

Peer review (11 reviews for 4 publications/grants)

Review activity for FEMS microbiology ecology. (1)
Review activity for MSystems. (1)
Review activity for Nature communications (7)
Review activity for PLoS computational biology. (2)
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