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ResearcherID: D-8015-2014
Loop profile: 978011

Keywords

Statistical Physics - Computational Biology - Molecular Dynamics - Bioinformatics

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Employment (5)

Temple University: Philadelphia, Pennsylvania, US

2021-07-01 to present | Research Professor (Biology)
Employment
Source: Self-asserted source
Vincenzo Carnevale

Temple University: Philadelphia, PA, US

2015-07-01 to present | Research Associate Professor (Biology)
Employment
Source: Self-asserted source
Vincenzo Carnevale

Temple University: Philadelphia, PA, US

2011-09-01 to 2015-06-31 | Research Assistant Professor (Biology)
Employment
Source: Self-asserted source
Vincenzo Carnevale

Temple University: Philadelphia, PA, US

2010-08-01 to 2011-08-31 | Post Doc (Chemistry)
Employment
Source: Self-asserted source
Vincenzo Carnevale

University of Pennsylvania: Philadelphia, PA, US

2008-01-08 to 2010-08-01 | Post Doc (Chemistry)
Employment
Source: Self-asserted source
Vincenzo Carnevale

Education and qualifications (2)

Scuola Internazionale Superiore di Studi Avanzati: Trieste, Friuli-Venezia Giulia, IT

2003-09-01 to 2007-12-21 | Ph.D. (Statistical and Biological Physics)
Education
Source: Self-asserted source
Vincenzo Carnevale

Università di Pisa: Pisa, Toscana, IT

1996-10-01 to 2003-01-10 | B.Sc and M.Sc. (Physics)
Education
Source: Self-asserted source
Vincenzo Carnevale

Funding (1)

Unveiling allosteric pathways in ion channels

2014-09-01 to 2015-08-31 | Grant
National Science Foundation - Directorate for Computer & Information Science & Engineering (Arlington, US)
URL: https://grants.uberresearch.com/100000083/1440059/Unveiling-allosteric-pathways-in-ion-channels
GRANT_NUMBER: 1440059
Source: Self-asserted source
Vincenzo Carnevale via DimensionsWizard
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Preferred source (of 2)‎

Works (50 of 119)

Items per page:
Page 1 of 3

Markov models and long-term memory in ion channels: A contradiction in terms?

Biophysical Journal
2025-02 | Journal article
DOI: 10.1016/j.bpj.2025.02.006
Contributors: Daniel Sigg; Vincenzo Carnevale
Source: check_circle
Crossref

STICI: Split-Transformer with integrated convolutions for genotype imputation

Nature Communications
2025-01-31 | Journal article
DOI: 10.1038/s41467-025-56273-3
Contributors: Mohammad Erfan Mowlaei; Chong Li; Oveis Jamialahmadi; Raquel Dias; Junjie Chen; Benyamin Jamialahmadi; Timothy Richard Rebbeck; Vincenzo Carnevale; Sudhir Kumar; Xinghua Shi
Source: check_circle
Crossref

Topological properties of interfacial hydrogen bond networks

Physical Review B
2024-07-15 | Journal article
DOI: 10.1103/PhysRevB.110.014105
Contributors: Ruiyu Wang; Mark DelloStritto; Michael L. Klein; Eric Borguet; Vincenzo Carnevale
Source: check_circle
Crossref

Applications of the Newly Developed Force-Field Parameters Uncover a Dynamic Nature of Ω-Loop C in the Lys-Ligated Alkaline Form of Cytochrome c

The Journal of Physical Chemistry B
2024-06-27 | Journal article
DOI: 10.1021/acs.jpcb.4c00625
Contributors: Yunling Deng; Vincenzo Carnevale; Robert Ditchfield; Ekaterina V. Pletneva
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Crossref

Unplugging lateral fenestrations of NALCN reveals a hidden drug binding site within the pore region

Proceedings of the National Academy of Sciences
2024-05-28 | Journal article
DOI: 10.1073/pnas.2401591121
Contributors: Katharina Schott; Samuel George Usher; Oscar Serra; Vincenzo Carnevale; Stephan Alexander Pless; Han Chow Chua
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Crossref

Ion Channels in Critical Membranes: Clustering, Cooperativity, and Memory Effects

PRX Life
2024-02-08 | Journal article
DOI: 10.1103/PRXLife.2.013007
Contributors: Antonio Suma; Daniel Sigg; Seamus Gallagher; Giuseppe Gonnella; Vincenzo Carnevale
Source: check_circle
Crossref

Cation Modifies Interfacial Water Structures on Platinum during Alkaline Hydrogen Electrocatalysis

Journal of the American Chemical Society
2024-01-31 | Journal article
DOI: 10.1021/jacs.3c09128
Contributors: Pengtao Xu; Ruiyu Wang; Haojian Zhang; Vincenzo Carnevale; Eric Borguet; Jin Suntivich
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Crossref

Molecular Engineering of pH-Responsive Anchoring Systems onto Poly(ethylene glycol) Corona

Journal of the American Chemical Society
2023-05-17 | Journal article
DOI: 10.1021/jacs.3c00986
Contributors: Shaohua Zhang; Abhinav Srivastava; Wei Li; Sjoerd J. Rijpkema; Vincenzo Carnevale; Michael L. Klein; Daniela A. Wilson
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Crossref

Detecting Liquid–Liquid Phase Separations Using Molecular Dynamics Simulations and Spectral Clustering

The Journal of Physical Chemistry B
2023-04-27 | Journal article
DOI: 10.1021/acs.jpcb.3c00805
Contributors: Mohsen Farshad; Mark J. DelloStritto; Antonio Suma; Vincenzo Carnevale
Source: check_circle
Crossref

Exploration of the Nucleation Pathway for Supramolecular Fibers

Journal of Chemical Information and Modeling
2023-04-24 | Journal article
DOI: 10.1021/acs.jcim.3c00049
Contributors: Phu K. Tang; Prabir Khatua; Vincenzo Carnevale; Sharon M. Loverde
Source: check_circle
Crossref

Split-Transformer Impute (STI): A Transformer Framework for Genotype Imputation

2023-03-06 | Preprint
DOI: 10.1101/2023.03.05.531190
Contributors: Mohammad Erfan Mowlaei; Chong Li; Oveis Jamialahmadi; Raquel Dias; Junjie Chen; Benyamin Jamialahmadi; Timothy Richard Rebbeck; Vincenzo Carnevale; Sudhir Kumar; Xinghua Shi
Source: check_circle
Crossref

Adaptive insertion of a hydrophobic anchor into a poly(ethylene glycol) host for programmable surface functionalization

Nature Chemistry
2023-02 | Journal article
DOI: 10.1038/s41557-022-01090-0
Contributors: Shaohua Zhang; Wei Li; Jiabin Luan; Abhinav Srivastava; Vincenzo Carnevale; Michael L. Klein; Jiawei Sun; Danni Wang; Serena P. Teora; Sjoerd J. Rijpkema et al.
Source: check_circle
Crossref

Nonequilibrium Thermodynamics of DNA Nanopore Unzipping

Physical Review Letters
2023-01-27 | Journal article
DOI: 10.1103/PhysRevLett.130.048101
Contributors: Antonio Suma; Vincenzo Carnevale; Cristian Micheletti
Source: check_circle
Crossref

Sequence and structural conservation reveal fingerprint residues in TRP channels

eLife
2022-06-10 | Journal article
DOI: 10.7554/eLife.73645
Contributors: Deny Cabezas-Bratesco; Francisco A Mcgee; Charlotte K Colenso; Kattina Zavala; Daniele Granata; Vincenzo Carnevale; Juan C Opazo; Sebastian E Brauchi
Source: check_circle
Crossref

Computational and functional characterization of the PI(4,5)P2 binding site of the TRPM3 ion channel

2022-06-07 | Preprint
DOI: 10.1101/2022.06.05.494899
Contributors: Siyuan Zhao; Vincenzo Carnevale; Eleonora Gianti; Tibor Rohacs
Source: check_circle
Crossref

Epistasis Creates Invariant Sites and Modulates the Rate of Molecular Evolution

Molecular Biology and Evolution
2022-05-03 | Journal article
DOI: 10.1093/molbev/msac106
Contributors: Ravi Patel; Vincenzo Carnevale; Sudhir Kumar; Banu Ozkan
Source: check_circle
Crossref

Probing ion channel functional architecture and domain recombination compatibility by massively parallel domain insertion profiling

Nature Communications
2021-12-08 | Journal article
DOI: 10.1038/s41467-021-27342-0
Contributors: Willow Coyote-Maestas; David Nedrud; Antonio Suma; Yungui He; Kenneth A. Matreyek; Douglas M. Fowler; Vincenzo Carnevale; Chad L. Myers; Daniel Schmidt
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Crossref

Investigations of water/oxide interfaces by molecular dynamics simulations

WIREs Computational Molecular Science
2021-11 | Journal article
DOI: 10.1002/wcms.1537
Contributors: Ruiyu Wang; Michael L. Klein; Vincenzo Carnevale; Eric Borguet
Source: check_circle
Crossref

The generative capacity of probabilistic protein sequence models

Nature Communications
2021-11-02 | Journal article
DOI: 10.1038/s41467-021-26529-9
Contributors: Francisco McGee; Sandro Hauri; Quentin Novinger; Slobodan Vucetic; Ronald M. Levy; Vincenzo Carnevale; Allan Haldane
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Crossref

Binding Sites and the Mechanism of Action of Propofol and a Photoreactive Analogue in Prokaryotic Voltage-Gated Sodium Channels

ACS Chemical Neuroscience
2021-10-20 | Journal article
DOI: 10.1021/acschemneuro.1c00495
Contributors: Elaine Yang; Weiming Bu; Antonio Suma; Vincenzo Carnevale; Kimberly C. Grasty; Patrick J. Loll; Kellie Woll; Natarajan Bhanu; Benjamin A. Garcia; Roderic G. Eckenhoff et al.
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Crossref

Generative Capacity of Probabilistic Protein Sequence Models

2021-04-05 | Preprint
DOI: 10.21203/rs.3.rs-145189/v1
Contributors: Francisco McGee; Quentin Novinger; Ronald Levy; Vincenzo Carnevale; Allan Haldane
Source: check_circle
Crossref

Modeling solvation effects on absorption and fluorescence spectra of indole in aqueous solution

The Journal of Chemical Physics
2021-02-14 | Journal article
DOI: 10.1063/5.0038342
Contributors: Salsabil Abou-Hatab; Vincenzo Carnevale; Spiridoula Matsika
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Crossref

Dual regulation of TRPV1 channels by phosphatidylinositol via functionally distinct binding sites

Journal of Biological Chemistry
2021-01 | Journal article
DOI: 10.1016/j.jbc.2021.100573
Contributors: Aysenur Torun Yazici; Eleonora Gianti; Marina A. Kasimova; Bo-Hyun Lee; Vincenzo Carnevale; Tibor Rohacs
Source: check_circle
Crossref

Particle-based Ising model

Physical Review E
2021-01-21 | Journal article
DOI: 10.1103/PhysRevE.103.012125
Contributors: Quentin Novinger; Antonio Suma; Daniel Sigg; Giuseppe Gonnella; Vincenzo Carnevale
Source: check_circle
Crossref

Arranging Small Molecules with Subnanometer Precision on DNA Origami Substrates for the Single‐Molecule Investigation of Protein–Ligand Interactions

Small Structures
2020-10 | Journal article
DOI: 10.1002/sstr.202000038
Contributors: Jingyuan Huang; Antonio Suma; Meiying Cui; Guido Grundmeier; Vincenzo Carnevale; Yixin Zhang; Charlotte Kielar; Adrian Keller
Source: check_circle
Crossref

The propofol binding sites of prokaryotic voltage-gated sodium channels

2020-10-29 | Preprint
DOI: 10.1101/2020.10.28.359513
Contributors: Elaine Yang; Weiming Bu; Antonio Suma; Vincenzo Carnevale; Kimberly C. Grasty; Patrick Loll; Kellie Woll; Natarajan Bhanu; Benjamin A. Garcia; Roderic G. Eckenhoff et al.
Source: check_circle
Crossref

Polyamine blockade and binding energetics in the MthK potassium channel

Journal of General Physiology
2020-07-06 | Journal article
DOI: 10.1085/jgp.201912527
Contributors: Antonio Suma; Daniele Granata; Andrew S. Thomson; Vincenzo Carnevale; Brad S. Rothberg
Source: check_circle
Crossref

Microcanonical coarse-graining of the kinetic Ising model

The Journal of Chemical Physics
2020-02-28 | Journal article
DOI: 10.1063/1.5139228
Contributors: Daniel Sigg; Vincent A. Voelz; Vincenzo Carnevale
Source: check_circle
Crossref

First-Principles Calculation of Water pKa Using the Newly Developed SCAN Functional

The Journal of Physical Chemistry Letters
2020-01-02 | Journal article
DOI: 10.1021/acs.jpclett.9b02913
Contributors: Ruiyu Wang; Vincenzo Carnevale; Michael L. Klein; Eric Borguet
Source: check_circle
Crossref

Sodium Halide Adsorption and Water Structure at the α-Alumina(0001)/Water Interface

The Journal of Physical Chemistry C
2019-06-27 | Journal article
DOI: 10.1021/acs.jpcc.9b03054
Contributors: Ruiyu Wang; Mark DelloStritto; Richard C. Remsing; Vincenzo Carnevale; Michael L. Klein; Eric Borguet
Source: check_circle
Crossref

Phosphoinositides regulate the TRPV1 channel via two functionally distinct binding sites

2019-02-22 | Other
DOI: 10.1101/558874
Contributors: Aysenur Torun Yazici; Eleonora Gianti; Marina A. Kasimova; Vincenzo Carnevale; Tibor Rohacs
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Crossref

A hypothetical molecular mechanism for TRPV1 activation that invokes rotation of an S6 asparagine

Journal of General Physiology
2018-11-05 | Journal article
DOI: 10.1085/jgp.201812124
Contributors: Marina A. Kasimova; Aysenur Torun Yazici; Yevgen Yudin; Daniele Granata; Michael L. Klein; Tibor Rohacs; Vincenzo Carnevale
Source: check_circle
Crossref

Structural insights on TRPV5 gating by endogenous modulators

Nature Communications
2018-10-10 | Journal article
DOI: 10.1038/s41467-018-06753-6
Contributors: Taylor E. T. Hughes; Ruth A. Pumroy; Aysenur Torun Yazici; Marina A. Kasimova; Edwin C. Fluck; Kevin W. Huynh; Amrita Samanta; Sudheer K. Molugu; Z. Hong Zhou; Vincenzo Carnevale et al.
Source: check_circle
Crossref

Propofol inhibits prokaryotic voltage-gated Na+ channels by promoting activation-coupled inactivation

Journal of General Physiology
2018-09-03 | Journal article
DOI: 10.1085/jgp.201711924
Contributors: Elaine Yang; Daniele Granata; Roderic G. Eckenhoff; Vincenzo Carnevale; Manuel Covarrubias
Source: check_circle
Crossref

Propofol inhibits the voltage-gated sodium channel NaChBac at multiple sites

Journal of General Physiology
2018-09-03 | Journal article
DOI: 10.1085/jgp.201811993
Contributors: Yali Wang; Elaine Yang; Marta M. Wells; Vasyl Bondarenko; Kellie Woll; Vincenzo Carnevale; Daniele Granata; Michael L. Klein; Roderic G. Eckenhoff; William P. Dailey et al.
Source: check_circle
Crossref

A consistent picture of TRPV1 activation emerges from molecular simulations and experiments

2018-04-28 | Other
DOI: 10.1101/310151
Contributors: Marina A. Kasimova; Aysenur Torun Yazici; Yevgen Yudin; Daniele Granata; Michael L. Klein; Tibor Rohacs; Vincenzo Carnevale
Source: check_circle
Crossref

Ion Channel Sensing: Are Fluctuations the Crux of the Matter?

The Journal of Physical Chemistry Letters
2018-03-15 | Journal article
DOI: 10.1021/acs.jpclett.7b03396
Contributors: Marina A. Kasimova; Aysenur Yazici; Yevgen Yudin; Daniele Granata; Michael L. Klein; Tibor Rohacs; Vincenzo Carnevale
Source: check_circle
Crossref

Conformational dynamics in TRPV1 channels reported by an encoded coumarin amino acid

eLife
2017-12-05 | Journal article
DOI: 10.7554/eLife.28626
Contributors: Ximena Steinberg; Marina A Kasimova; Deny Cabezas-Bratesco; Jason D Galpin; Ernesto Ladron-de-Guevara; Federica Villa; Vincenzo Carnevale; Leon Islas; Christopher A Ahern; Sebastian E Brauchi
Source: check_circle
Crossref

From Sequence to Function: Coevolving Amino Acids Encode Structural and Functional Domains

2017-02-17 | Other
DOI: 10.1101/109397
Contributors: Daniele Granata; Luca Ponzoni; Cristian Micheletti; Vincenzo Carnevale
Source: check_circle
Crossref

Understanding TRPV1 activation by ligands: Insights from the binding modes of capsaicin and resiniferatoxin

Proceedings of the National Academy of Sciences
2016 | Journal article
Source: Self-asserted source
Vincenzo Carnevale

TRPV1: A Target for Rational Drug Design

Pharmaceuticals
2016-08-23 | Journal article
DOI: 10.3390/ph9030052
Contributors: Vincenzo Carnevale; Tibor Rohacs
Source: check_circle
Crossref

Combined computational and experimental analysis of a complex of ribonuclease III and the regulatory macrodomain protein, YmdB

Proteins: Structure, Function, and Bioinformatics
2015 | Journal article
Source: Self-asserted source
Vincenzo Carnevale

Comparative sequence analysis suggests a conserved gating mechanism for TRP channels

The Journal of general physiology
2015 | Journal article
Source: Self-asserted source
Vincenzo Carnevale

Comparative Sequence Analysis Suggests a Unified Gating Mechanism for TRP Channels

Biophysical Journal
2015 | Journal article
Source: Self-asserted source
Vincenzo Carnevale

Emergent Properties and Functions of Nanoconfined Nucleic Acid Architectures

RNA and DNA Diagnostics
2015 | Book chapter
Source: Self-asserted source
Vincenzo Carnevale

Free-energy landscape of ion-channel voltage-sensor--domain activation

Proceedings of the National Academy of Sciences
2015 | Journal article
Source: Self-asserted source
Vincenzo Carnevale

Interaction of Ribonuclease III with the Regulatory Macrodomain Protein YmdB Analyzed by Docking Calculations and SPR Experiments

Biophysical Journal
2015 | Journal article
Source: Self-asserted source
Vincenzo Carnevale

Mechanistic Insights into the Modulation of Voltage-Gated Ion Channels by Inhalational Anesthetics

Biophysical journal
2015 | Journal article
Source: Self-asserted source
Vincenzo Carnevale

Molecular Determinants of Voltage Sensor Domain Activation

Biophysical Journal
2015 | Journal article
Source: Self-asserted source
Vincenzo Carnevale

New Glycosides and Trypanocidal Metabolites from Vangueria edulis.

Natural product communications
2015 | Journal article
Source: Self-asserted source
Vincenzo Carnevale
Items per page:
Page 1 of 3

Peer review (25 reviews for 8 publications/grants)

Review activity for Biophysical journal. (3)
Review activity for Journal of chemical information and modeling. (2)
Review activity for Journal of chemical theory and computation : (2)
Review activity for Journal of molecular evolution. (7)
Review activity for Journal of the American Chemical Society. (1)
Review activity for Nature communications (7)
Review activity for Nature structural & molecular biology. (1)
Review activity for The journal of physical chemistry letters. (2)
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