Personal information

Activities

Employment (4)

University of Cambridge: Cambridge, GB

(Department of Plant Sciences)
Employment
Source: Self-asserted source
J A N Filipe

London School of Hygiene & Tropical Medicine: London, London, GB

(Infectious Disease Epidemiology)
Employment
Source: Self-asserted source
J A N Filipe

Imperial College London Department of Infectious Disease Epidemiology: London, London, GB

Employment
Source: Self-asserted source
J A N Filipe

Biomathematics and Statistics Scotland: Aberdeen, GB

Senior Stastistician (Rowett Institute)
Employment
Source: Self-asserted source
J A N Filipe

Works (50 of 60)

Items per page:
Page 1 of 2

A systematised review of seasonal influenza case-fatality risk

2024-10-23 | Preprint
Contributors: Johnny A N Filipe; Carlos K H Wong; Edwin van Leeuwen; Lucy Goodfellow; Simon R Procter; Mark Jit
Source: check_circle
Crossref

The potential global impact and cost-effectiveness of next-generation influenza vaccines: a modelling analysis

2024-09-22 | Preprint
Contributors: Lucy Goodfellow; Simon R Procter; Mihaly Koltai; Naomi R Waterlow; Johnny A N Filipe; Carlos K H Wong; Edwin van Leeuwen; Rosalind M Eggo; Mark Jit
Source: check_circle
Crossref

Novel epidemiological model of gastrointestinal nematode infection to assess grazing cattle resilience by integrating host growth, parasite, grass and environmental dynamics

International Journal for Parasitology
2023-03 | Journal article
Contributors: J.A.N. Filipe; I. Kyriazakis; C. McFarland; E.R. Morgan
Source: check_circle
Crossref

Free and Modified Mycotoxins in Organic and Conventional Oats (Avena sativa L.) Grown in Scotland

Toxins
2023-03-28 | Journal article
Contributors: Noshin Daud; Valerie Currie; Gary Duncan; Joao Filipe; Tomoya Yoshinari; Gary Stoddart; Deborah Roberts; Silvia Gratz
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Timing of daily calorie loading affects appetite and hunger responses without changes in energy metabolism in healthy subjects with obesity

Cell Metabolism
2022-10 | Journal article
Part of ISSN: 1550-4131
Contributors: J A N Filipe; Leonie C. Ruddick-Collins; Peter J. Morgan; Claire L. Fyfe; Joao A.N. Filipe; Graham W. Horgan; Klaas R. Westerterp; Jonathan D. Johnston; Alexandra M. Johnstone
Source: Self-asserted source
J A N Filipe

Novel epidemiological model of gastrointestinal-nematode infection to assess grazing cattle resilience by integrating host growth, parasite, grass and environmental dynamics

[]
2022-05-15 | Preprint
Contributors: J A N Filipe; J.A.N. Filipe; I. Kyriazakis; C. McFarland; E.R. Morgan
Source: Self-asserted source
J A N Filipe

Changes in the environmental impacts of pig production systems in Great Britain over the last 18 years

Agricultural Systems
2021 | Journal article
Part of ISSN: 0308-521X
Source: Self-asserted source
J A N Filipe

Bayesian comparison of models for precision feeding and management in growing-finishing pigs

Biosystems Engineering
2021-11 | Journal article
Part of ISSN: 1537-5110
Contributors: J A N Filipe; Maciej M. Misiura; João A.N. Filipe; Ludovic Brossard; Ilias Kyriazakis
Source: Self-asserted source
J A N Filipe

A Novel Estimation of Unobserved Pig Growth Traits for the Purposes of Precision Feeding Methods

Frontiers in Veterinary Science
2021-07-29 | Journal article
Part of ISSN: 2297-1769
Contributors: J A N Filipe; Maciej M. Misiura; Joao A. N. Filipe; Ilias Kyriazakis
Source: Self-asserted source
J A N Filipe

Comparison of meat versus soya based high-protein diets on faecal microbiota and microbial metabolites

Proceedings of the Nutrition Society
2020 | Journal article
Part of ISSN: 0029-6651
Part of ISSN: 1475-2719
Contributors: J A N Filipe; S.W. Gratz; L. Scobbie; A.J. Richardson; X. Zhang; C. Fyfe; F.M. Farquharson; G. Duncan; J. Filipe; W.Y. Zhu et al.
Source: Self-asserted source
J A N Filipe

A Bayesian comparison of individual growth response models for precision-feeding of growing pigs

71st Annual Meeting of the European Federation of Animal Science
2020-11-21 | Conference paper
Source: Self-asserted source
J A N Filipe

How do pigs deal with dietary phosphorus deficiency?

British Journal of Nutrition
2020-08-14 | Journal article
Part of ISSN: 0007-1145
Part of ISSN: 1475-2662
Source: Self-asserted source
J A N Filipe

Management Strategies for Conservation of Tanoak in California Forests Threatened by Sudden Oak Death: A Disease-Community Feedback Modelling Approach

Forests
2019-12-03 | Journal article
Contributors: João A. N. Filipe; Richard C. Cobb; Maëlle Salmon; Christopher A. Gilligan
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Bayesian, Likelihood-Free Modelling of Phenotypic Plasticity and Variability in Individuals and Populations

Frontiers in Genetics
2019-09-20 | Journal article
Part of ISSN: 1664-8021
Source: Self-asserted source
J A N Filipe

A general method to relate feed intake and body mass across individuals and species

70th Annual Meeting of the European Federation of Animal Science
2019-08-26 | Conference paper
Source: Self-asserted source
J A N Filipe
grade
Preferred source (of 2)‎

Do not neglect calcium: a systematic review and meta-analysis (meta-regression) of its digestibility and utilisation in growing and finishing pigs

British Journal of Nutrition
2018-06-14 | Journal article
Part of ISSN: 0007-1145
Part of ISSN: 1475-2662
Source: Self-asserted source
J A N Filipe

The quantitative principles of animal growth

Feed Evaluation Science
2018-01-01 | Book chapter
Part of ISBN: 9789086863099
Part of ISBN: 9789086868544
Source: Self-asserted source
J A N Filipe

Dynamical network models for cattle trade: Towards economy-based epidemic risk assessment

Journal of Complex Networks
2017 | Journal article
EID:

2-s2.0-85028303647

Contributors: Hoscheit, P.; Geeraert, S.; Beaunée, G.; Monod, H.; Gilligan, C.A.; Filipe, J.A.N.; Vergu, E.; Moslonka-Lefebvre, M.
Source: Self-asserted source
J A N Filipe via Scopus - Elsevier

Modelling individual uncertainty and population variation in phenotypical traits of livestock

68th Annual Meeting of the European Association for Animal Production
2017-08-29 | Conference paper
Source: Self-asserted source
J A N Filipe

Market analyses of livestock trade networks to inform the prevention of joint economic and epidemiological risks.

Journal of the Royal Society, Interface
2016-03 | Journal article
Contributors: Moslonka-Lefebvre M; Gilligan CA; Monod H; Belloc C; Ezanno P; Filipe JA; Vergu E
Source: Self-asserted source
J A N Filipe via Europe PubMed Central

Epidemics in markets with trade friction and imperfect transactions

Journal of Theoretical Biology
2015-06 | Journal article
Contributors: Mathieu Moslonka-Lefebvre; Hervé Monod; Christopher A. Gilligan; Elisabeta Vergu; João A.N. Filipe
Source: check_circle
Crossref

Estimating the delay between host infection and disease (incubation period) and assessing its significance to the epidemiology of plant diseases.

PloS one
2014 | Journal article
Contributors: Leclerc M; Doré T; Gilligan CA; Lucas P; Filipe JA
Source: Self-asserted source
J A N Filipe via Europe PubMed Central

Host growth can cause invasive spread of crops by soilborne pathogens.

PloS one
2013 | Journal article
Contributors: Leclerc M; Doré T; Gilligan CA; Lucas P; Filipe JA
Source: Self-asserted source
J A N Filipe via Europe PubMed Central

Biodiversity Conservation in the Face of Dramatic Forest Disease: An Integrated Conservation Strategy for Tanoak (Notholithocarpus densiflorus) Threatened by Sudden Oak Death

Madroño
2013-04 | Journal article
Part of ISSN: 0024-9637
Part of ISSN: 1943-6297
Source: Self-asserted source
J A N Filipe

Epidemiological analysis of the effects of biofumigation for biological control of root rot in sugar beet

Plant pathology.
2013-02 | Journal article
OTHER-ID:

IND500643995

Contributors: Motisi N; Poggi S; Filipe JAN; Lucas P; Doré T; Montfort F; Gilligan CA; Bailey DJ
Source: Self-asserted source
J A N Filipe via Europe PubMed Central

Ecosystem transformation by emerging infectious disease: loss of large tanoak from California forests

journal of ecology.
2012-05 | Journal article
OTHER-ID:

IND44766976

Contributors: Cobb RC; Filipe JAN; Meentemeyer RK; Gilligan CA; Rizzo DM
Source: Self-asserted source
J A N Filipe via Europe PubMed Central

Landscape epidemiology and control of pathogens with cryptic and long-distance dispersal: sudden oak death in northern Californian forests.

PLoS Computational Biology
2012-01 | Journal article
Contributors: Filipe JA; Cobb RC; Meentemeyer RK; Lee CA; Valachovic YS; Cook AR; Rizzo DM; Gilligan CA
Source: Self-asserted source
J A N Filipe via Europe PubMed Central

Epidemiological modeling of invasion in heterogeneous landscapes: Spread of sudden oak death in California (1990-2030)

Ecosphere
2011 | Journal article
EID:

2-s2.0-80053632774

Contributors: Meentemeyer, R.K.; Cunniffe, N.J.; Cook, A.R.; N. Filipe, J.A.; Hunter, R.D.; Rizzo, D.M.; Gilligan, C.A.
Source: Self-asserted source
J A N Filipe via Scopus - Elsevier

Loss of population levels of immunity to malaria as a result of exposure-reducing interventions: consequences for interpretation of disease trends.

PloS one
2009 | Journal article
Contributors: Ghani AC; Sutherland CJ; Riley EM; Drakeley CJ; Griffin JT; Gosling RD; Filipe JA
Source: Self-asserted source
J A N Filipe via Europe PubMed Central

Estimates of the duration of the early and late stage of gambiense sleeping sickness.

BMC infectious diseases
2008 | Journal article
Contributors: Checchi F; Filipe JA; Haydon DT; Chandramohan D; Chappuis F
Source: Self-asserted source
J A N Filipe via Europe PubMed Central

The natural progression of gambiense sleeping sickness: What is the evidence?

PLoS Neglected Tropical Diseases
2008 | Journal article
DOI:

10:1371/journal.pntd.0000303

EID:

2-s2.0-65549121173

Contributors: Checchi, F.; Filipe, J.A.N.; Barrett, M.P.; Chandramohan, D.
Source: Self-asserted source
J A N Filipe via Scopus - Elsevier

The natural progression of Gambiense sleeping sickness: what is the evidence?

PLoS neglected tropical diseases
2008 | Journal article
Contributors: Checchi F; Filipe JA; Barrett MP; Chandramohan D
Source: Self-asserted source
J A N Filipe via Europe PubMed Central

Effect of single-dose ivermectin on Onchocerca volvulus: a systematic review and meta-analysis.

The Lancet. Infectious diseases
2008-05 | Journal article
Contributors: Basáñez MG; Pion SD; Boakes E; Filipe JA; Churcher TS; Boussinesq M
Source: Self-asserted source
J A N Filipe via Europe PubMed Central
grade
Preferred source (of 2)‎

Determination of the processes driving the acquisition of immunity to malaria using a mathematical transmission model.

PLoS computational biology
2007-12 | Journal article
Contributors: Filipe JA; Riley EM; Drakeley CJ; Sutherland CJ; Ghani AC
Source: Self-asserted source
J A N Filipe via Europe PubMed Central

Bayesian estimation for percolation models of disease spread in plant populations

Statistics and Computing
2006 | Journal article
EID:

2-s2.0-33750044838

Contributors: Gibson, G.J.; Otten, W.; Filipe, J.A.N.; Cook, A.; Marion, G.; Gilligan, C.A.
Source: Self-asserted source
J A N Filipe via Scopus - Elsevier

Density dependence and the control of helminth parasites.

The Journal of animal ecology
2006-11 | Journal article
Contributors: Churcher TS; Filipe JA; Basáñez MG
Source: Self-asserted source
J A N Filipe via Europe PubMed Central

Microfilarial distribution of Loa loa in the human host: population dynamics and epidemiological implications.

Parasitology
2006-07 | Journal article
Contributors: Pion SD; Filipe JA; Kamgno J; Gardon J; Basáñez MG; Boussinesq M
Source: Self-asserted source
J A N Filipe via Europe PubMed Central
grade
Preferred source (of 2)‎

Co-infection with Onchocerca volvulus and Loa loa microfilariae in central Cameroon: are these two species interacting?

Parasitology
2006-06 | Journal article
Contributors: Pion SD; Clarke P; Filipe JA; Kamgno J; Gardon J; Basáñez MG; Boussinesq M
Source: Self-asserted source
J A N Filipe via Europe PubMed Central
grade
Preferred source (of 2)‎

A model for radiation-induced bystander effects, with allowance for spatial position and the effects of cell turnover

Journal of Theoretical Biology
2005 | Journal article
EID:

2-s2.0-9644284385

Contributors: Little, M.P.; Filipe, J.A.N.; Prise, K.M.; Folkard, M.; Belyakov, O.V.
Source: Self-asserted source
J A N Filipe via Scopus - Elsevier

Damping-off epidemics, contact structure, and disease transmission in mixed-species populations

Ecology
2005 | Journal article
EID:

2-s2.0-21744432237

Contributors: Otten, W.; Filipe, J.A.N.; Gilligan, C.A.
Source: Self-asserted source
J A N Filipe via Scopus - Elsevier

Human infection patterns and heterogeneous exposure in river blindness.

Proceedings of the National Academy of Sciences of the United States of America
2005-10 | Journal article
Contributors: Filipe JA; Boussinesq M; Renz A; Collins RC; Vivas-Martinez S; Grillet ME; Little MP; Basáñez MG
Source: Self-asserted source
J A N Filipe via Europe PubMed Central

A hierarchical model for compositional data analysis.

Journal of agricultural, biological, and environmental statistics.
2005-03 | Journal article
OTHER-ID:

IND43731016

Contributors: Brewer MJ; Filipe JAN; Elston DA; Dawson LA; Mayes RW; Soulsby C; Dunn SM
Source: Self-asserted source
J A N Filipe via Europe PubMed Central
grade
Preferred source (of 2)‎

On 'Analytical models for the patchy spread of plant disease'.

Bulletin of mathematical biology
2004-09 | Journal article
Contributors: Filipe JA; Maule MM; Gilligan CA
Source: Self-asserted source
J A N Filipe via Europe PubMed Central

An empirical method to estimate the effect of soil on the rate for transmission of damping-off disease.

The New phytologist
2004-04 | Journal article
OTHER-ID:

IND43667673

Contributors: Otten W; Filipe JAN; Gilligan CA
Source: Self-asserted source
J A N Filipe via Europe PubMed Central

Inferring the dynamics of a spatial epidemic from time-series data.

Bulletin of mathematical biology
2004-03 | Journal article
Contributors: Filipe JA; Otten W; Gibson GJ; Gilligan CA
Source: Self-asserted source
J A N Filipe via Europe PubMed Central

Effects of dispersal mechanisms on spatio-temporal development of epidemics.

Journal of theoretical biology
2004-01 | Journal article
Contributors: Filipe JA; Maule MM
Source: Self-asserted source
J A N Filipe via Europe PubMed Central
grade
Preferred source (of 2)‎

Exact solution of a generalized model for surface deposition

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics
2003 | Journal article
EID:

2-s2.0-42749103138

Contributors: Filipe, J.A.N.; Rodgers, G.J.
Source: Self-asserted source
J A N Filipe via Scopus - Elsevier

Quantification and analysis of transmission rates for soilborne epidemics

Ecology
2003 | Journal article
EID:

2-s2.0-0344079391

Contributors: Otten, W.; Filipe, J.A.N.; Bailey, D.J.; Gilligan, C.A.
Source: Self-asserted source
J A N Filipe via Scopus - Elsevier

Solution of epidemic models with quenched transients

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics
2003 | Journal article
EID:

2-s2.0-0038732711

Contributors: Filipe, J.A.N.; Gilligan, C.A.
Source: Self-asserted source
J A N Filipe via Scopus - Elsevier

Exact solution of a generalized model for surface deposition.

Physical review. E, Statistical, nonlinear, and soft matter physics
2003-08 | Journal article
Contributors: Filipe JA; Rodgers GJ
Source: Self-asserted source
J A N Filipe via Europe PubMed Central
grade
Preferred source (of 2)‎
Items per page:
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Peer review (1 review for 1 publication/grant)

Review activity for Statistical methods & applications. (1)