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Works (24)

CRISPR/Cas12a-based genome editing for cyanophage of Anabeana sp.

Synthetic and Systems Biotechnology
2025 | Journal article
DOI: 10.1016/j.synbio.2024.09.011
Contributors: Shengjian Yuan; Yanchen Li; Chunhua Kou; YiChen Sun; Yingfei Ma
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Publisher Correction: Intestinal crypt microbiota modulates intestinal stem cell turnover and tumorigenesis via indole acetic acid

Nature Microbiology
2025-03-06 | Journal article
DOI: 10.1038/s41564-025-01976-y
Contributors: Shuning Zhang; Lihua Peng; Shyamal Goswami; Yuchen Li; Haiyue Dang; Shuli Xing; Panpan Feng; Giulia Nigro; Yingying Liu; Yingfei Ma et al.
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A Conserved Phage Recombinant System Counters Host CRISPR Immunity

2025-02-20 | Preprint
DOI: 10.21203/rs.3.rs-5972272/v1
Contributors: Yingfei Ma; Heng Zhu; Shengkun Dai; Shifeng Hou; Yuelong Li; Xin TAN; Ning Jia; Nan Li
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Intestinal crypt microbiota modulates intestinal stem cell turnover and tumorigenesis via indole acetic acid

Nature Microbiology
2025-02-19 | Journal article
DOI: 10.1038/s41564-025-01937-5
Contributors: Shuning Zhang; Lihua Peng; Shyamal Goswami; Yuchen Li; Haiyue Dang; Shuli Xing; Panpan Feng; Giulia Nigro; Yingying Liu; Yingfei Ma et al.
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Reply to: Inaccurate viral prediction leads to overestimated diversity of the archaeal virome in the human gut

Nature Communications
2024-07-17 | Journal article
DOI: 10.1038/s41467-024-49903-9
Contributors: Yongming Wang; Ran Li; Yingfei Ma
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Metagenomic analysis reveals gut phage diversity across three mammalian models

2024-05-03 | Preprint
DOI: 10.21203/rs.3.rs-4299134/v1
Contributors: Yingfei Ma; Menghao Yu; Yunmeng Chu; Yongming Wang; Luofei Mo; Xin TAN; Shun Guo; Shengjian Yuan
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CRISPR/Cas-based genome editing for cyanophage ofAnabeana sp

2024-04-18 | Preprint
DOI: 10.1101/2024.04.16.589687
Contributors: Shengjian Yuan; Yanchen Li; Chunhua Kou; YiChen Sun; Yingfei Ma
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Pharmacokinetics and safety evaluation of intravenously administered Pseudomonas phage PA_LZ7 in a mouse model

Microbiology Spectrum
2024-01-11 | Journal article
DOI: 10.1128/spectrum.01882-23
Contributors: Si-yun Wang; Xin Tan; Zi-qiang Liu; Hui Ma; Tian-bin Liu; Yong-qing Yang; Yong Ying; Ru-yue Gao; Dai-zhou Zhang; Ying-fei Ma et al.
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Engineered phage with cell-penetrating peptides for intracellular bacterial infections

mSystems
2023-10-26 | Journal article
DOI: 10.1128/msystems.00646-23
Contributors: Min Zhao; Xin Tan; Zi-qiang Liu; Lei Dou; Dong Liu; Yong-jun Pan; Ying-fei Ma; Jia-lin Yu; Pedro H. Oliveira
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Global transmission of broad-host-range plasmids derived from the human gut microbiome

Nucleic Acids Research
2023-08-25 | Journal article
DOI: 10.1093/nar/gkad498
Contributors: Lili Yang; Guoqin Mai; Zheng Hu; Haokui Zhou; Lei Dai; Ziqing Deng; Yingfei Ma
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Efficacy of a phage cocktail preparation for chronic lung infection withPseudomonas aeruginosain mice

2023-04-25 | Preprint
DOI: 10.1101/2023.04.25.538306
Contributors: Ru-yue Gao; Xin Tan; Yong-jun Pan; Jia-lin Yu; Ying-fei Ma
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Metagenomic analysis reveals unexplored diversity of archaeal virome in the human gut

Nature Communications
2022-12-29 | Journal article
DOI: 10.1038/s41467-022-35735-y
Contributors: Ran Li; Yongming Wang; Han Hu; Yan Tan; Yingfei Ma
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Genome-scale top-down strategy to generate viable genome-reduced phages

Nucleic Acids Research
2022-12-09 | Journal article
DOI: 10.1093/nar/gkac1168
Contributors: Shengjian Yuan; Juan Shi; Jianrong Jiang; Yingfei Ma
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A neural network‐based framework to understand the type 2 diabetes‐related alteration of the human gut microbiome

iMeta
2022-06 | Journal article
DOI: 10.1002/imt2.20
Contributors: Shun Guo; Haoran Zhang; Yunmeng Chu; Qingshan Jiang; Yingfei Ma
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Metagenomic analysis reveals unexplored diversity of archaeal virome in the human gut

2022-05-25 | Preprint
DOI: 10.21203/rs.3.rs-1667356/v1
Contributors: Ran Li; Yongming Wang; Han Hu; Yan Tan; Yingfei Ma
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Genome-scale top-down reduction of phages to generate viable minimal phage genomes

2021-07-13 | Preprint
DOI: 10.21203/rs.3.rs-633927/v1
Contributors: Shengjian Yuan; Juan Shi; Jianrong Jiang; Yingfei Ma
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A neural network-based framework to understand the Type 2 Diabetes (T2D)-related alteration of the human gut microbiome

2020-09-08 | Preprint
DOI: 10.1101/2020.09.06.284885
Contributors: Shun Guo; Haoran Zhang; Yunmeng Chu; Qingshan Jiang; Yingfei Ma
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Characterization and Genomic Analysis of ValSw3-3, a New Siphoviridae Bacteriophage Infecting Vibrio alginolyticus

Journal of Virology
2020-05-04 | Journal article
DOI: 10.1128/JVI.00066-20
Contributors: Ling Chen; Quan Liu; Jiqiang Fan; Tingwei Yan; Haoran Zhang; Jinfang Yang; Deng Deng; Chaolan Liu; Ting Wei; Yingfei Ma et al.
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Crossref

DeephageTP: A Convolutional Neural Network  Framework for Identifying Phage-specific Proteins from metagenomic sequencing data

2020-04-21 | Other
DOI: 10.21203/rs.3.rs-21641/v1
Contributors: Yunmeng Chu; Shun Guo; Dachao Cui; Haoran Zhang; xiongfei Fu; Yingfei Ma
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Gut Microbiome Alterations Precede Cerebral Amyloidosis and Microglial Pathology in a Mouse Model of Alzheimer’s Disease

BioMed Research International
2020-01 | Journal article
DOI: 10.1155/2020/8456596
Contributors: Yijing Chen; Lihua Fang; Shuo Chen; Haokui Zhou; Yingying Fan; Li Lin; Jing Li; Jinying Xu; Yuewen Chen; Yingfei Ma et al.
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Common Core Bacterial Biomarkers of Bladder Cancer Based on Multiple Datasets

BioMed Research International
2019-06-19 | Journal article
DOI: 10.1155/2019/4824909
Contributors: Guoqin Mai; Limei Chen; Ran Li; Quan Liu; Haoran Zhang; Yingfei Ma
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Crossref

A human gut phage catalog correlates the gut phageome with type 2 diabetes

Microbiome
2018-12 | Journal article
DOI: 10.1186/s40168-018-0410-y
Contributors: Yingfei Ma; Xiaoyan You; Guoqin Mai; Taku Tokuyasu; Chenli Liu
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Crossref

Characterization and genomic analyses of Aeromonas hydrophila phages AhSzq-1 and AhSzw-1, isolates representing new species within the T5virus genus

Archives of Virology
2018-07-19 | Journal article
DOI: 10.1007/s00705-018-3805-y
Contributors: Shengjian Yuan; Ling Chen; Quan Liu; Yan Zhou; Jingfang Yang; Deng Deng; Hongping Li; Yingfei Ma
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Crossref

Coupling metagenomics with cultivation to select host-specific probiotic micro-organisms for subtropical aquaculture

Journal of Applied Microbiology
2017-11 | Journal article
DOI: 10.1111/jam.13555
Contributors: J. Cui; M. Xiao; M. Liu; Z. Wang; F. Liu; L. Guo; H. Meng; H. Zhang; J. Yang; D. Deng et al.
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Peer review (12 reviews for 7 publications/grants)

Review activity for Cell host & microbe. (3)
Review activity for Current biology. (2)
Review activity for hLife. (2)
Review activity for iScience. (2)
Review activity for ISME communications. (1)
Review activity for Nature microbiology. (1)
Review activity for Trends in microbiology (1)
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