Personal information

United States

Activities

Employment (3)

University of Colorado Anschutz Medical Campus: Aurora, Colorado, US

2021-06-01 to present | Visiting Associate Professor (Center for Health AI)
Employment
Source: Self-asserted source
Anne Thessen

The Data Detektiv: Waltham, MA, US

2013-08-15 to present | Owner and Founder
Employment
Source: Self-asserted source
Anne Thessen

Oregon State University: Corvallis, OR, US

2018-06-11 to 2021-05-31 | Assistant Professor (Sr, Res) (Linus Pauling Institute)
Employment
Source: Self-asserted source
Anne Thessen

Education and qualifications (1)

University of Maryland College Park: College Park, MD, US

2002-09-02 to 2007-12-17 | Ph.D. (University of Maryland Center for Environmental Science)
Education
Source: Self-asserted source
Anne Thessen

Professional activities (6)

Women in the Enterprise of Science and Technology: Cambridge, MA, US

2011 to present | Board Observer/Volunteer
Service
Source: Self-asserted source
Anne Thessen

Biodiversity Information Standards: Brussels, BE

2010 to present
Membership
Source: Self-asserted source
Anne Thessen

Society of Professional Consultants: Waltham, MA, US

2014 to 2018 | Director
Service
Source: Self-asserted source
Anne Thessen

Society of Professional Consultants: Waltham, MA, US

2013 to 2018
Membership
Source: Self-asserted source
Anne Thessen

Phycological Society of America: Blacksburg, Virginia, US

2007 to 2018
Membership
Source: Self-asserted source
Anne Thessen

Coastal and Estuarine Research Federation: Seattle, Washington, US

2007 to 2018
Membership
Source: Self-asserted source
Anne Thessen

Funding (3)

Collaborative Research: Converging Genomics, Phenomics, and Environments Using Interpretable Machine Learning Models

2019-10-01 to 2021-09-30 | Grant
Directorate for Computer & Information Science & Engineering (Arlington, US)
GRANT_NUMBER: 1940330
Source: Self-asserted source
Anne Thessen via DimensionsWizard

The Integration of Trans-omics for Precision Medicine (TOPMED) and Other Heart, Lung, Blood and Sleep (HLBS) Data Sets with the Data Commons

2017-09-30 to 2020-09-29 | Grant
National Heart Lung and Blood Institute (Bethesda, US)
GRANT_NUMBER: OT3HL142479
Source: Self-asserted source
Anne Thessen via DimensionsWizard

The Ecology and Physiology of

2004-01-01 to 2006-12-31 | Grant
Environmental Protection Agency (Washington D.C., US)
GRANT_NUMBER: FP916343
Source: Self-asserted source
Anne Thessen via DimensionsWizard

Works (48)

An approach for collaborative development of a federated biomedical knowledge graph-based question-answering system: Question-of-the-Month challenges

Journal of Clinical and Translational Science
2023 | Journal article
Contributors: Karamarie Fecho; Chris Bizon; Tursynay Issabekova; Sierra Moxon; Anne E. Thessen; Shervin Abdollahi; Sergio E. Baranzini; Basazin Belhu; William E. Byrd; Lawrence Chung et al.
Source: check_circle
Crossref

Data Sharing and Ontology use among Agricultural Genetics, Genomics, and Breeding Databases and Resources of the AgBioData Consortium

2023-10-17 | Other
Contributors: Jennifer L Clarke; Monica Poelchau; Tanya Berardini; Marie-Angélique Laporte; Rex T. Nelson; Rie Sadohara; Peter Selby; Brandon Whitehead; Stephen Ficklin; Anne Thessen et al.
Source: check_circle
Crossref

Workshop Report: Catalyzing Knowledge-Driven Discovery in Environmental Health Sciences through a Harmonized Language

International Journal of Environmental Research and Public Health
2023-01-28 | Journal article
Contributors: Stephanie Holmgren; Shannon M. Bell; Jessica Wignall; Christopher G. Duncan; Richard K. Kwok; Ryan Cronk; Kimberly Osborn; Steven Black; Anne Thessen; Charles Schmitt
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

The exposome and nutritional pharmacology and toxicology: a new application for metabolomics

Exposome
2023-01-20 | Journal article
Contributors: Blake R Rushing; Anne E Thessen; Ghada A Soliman; Aramandla Ramesh; Susan C J Sumner
Source: check_circle
Crossref

Improving the discoverability of biodiversity data using the Global Names Finder

Biodiversity Information Science and Standards
2022-10-12 | Journal article
Contributors: Anne Thessen; Dmitry Mozzherin; David Shorthouse; David Patterson
Source: check_circle
Crossref

Progress toward a universal biomedical data translator

Clinical and Translational Science
2022-08 | Journal article
Contributors: Karamarie Fecho; Anne E. Thessen; Sergio E. Baranzini; Chris Bizon; Jennifer J. Hadlock; Sui Huang; Ryan T. Roper; Noel Southall; Casey Ta; Paul B. Watkins et al.
Source: check_circle
Crossref

From Reductionism to Reintegration: Solving society’s most pressing problems requires building bridges between data types across the life sciences

PLOS Biology
2021-03-26 | Journal article
Contributors: Anne E. Thessen; Paul Bogdan; David J. Patterson; Theresa M. Casey; César Hinojo-Hinojo; Orlando de Lange; Melissa A. Haendel
Source: check_circle
Crossref

The landscape of nutri-informatics: a review of current resources and challenges for integrative nutrition research

Database
2021-01-25 | Journal article
Contributors: Lauren Chan; Nicole Vasilevsky; Anne Thessen; Julie McMurry; Melissa Haendel
Source: check_circle
Crossref

People are essential to linking biodiversity data

Database
2020-11-27 | Journal article
Contributors: Quentin Groom; Anton Güntsch; Pieter Huybrechts; Nicole Kearney; Siobhan Leachman; Nicky Nicolson; Roderic D M Page; David P Shorthouse; Anne E Thessen; Elspeth Haston
Source: check_circle
Crossref

Transforming the study of organisms: Phenomic data models and knowledge bases

PLOS Computational Biology
2020-11-24 | Journal article
Contributors: Anne E. Thessen; Samuel Alizon; Ramona L. Walls; Lars Vogt; Jessica Singer; Robert Warren; Pier Luigi Buttigieg; James P. Balhoff; Christopher J. Mungall; Deborah L. McGuinness et al.
Source: check_circle
Crossref

A novel curation system to facilitate data integration across regional citizen science survey programs

PeerJ
2020-07-29 | Journal article
Contributors: Dana L. Campbell; Anne E. Thessen; Leslie Ries
Source: check_circle
Crossref

A Proposed Metadata Standard for Recording and Sharing Attribution Information in Biodiversity

Biodiversity Information Science and Standards
2019-06-18 | Journal article
Contributors: Anne Thessen; David Shorthouse; Deborah Paul; Michael Conlon; Matt Woodburn; Dimitrios Koureas; Sarah Ramdeen; Laurel Haak; Peter Cornwell
Source: check_circle
Crossref

Semantic Interoperability Solutions for the Essential Variables: Focus on biodiversity

Biodiversity Information Science and Standards
2019-06-18 | Journal article
Contributors: Pier Luigi Buttigieg; Ramona Walls; Anne Thessen
Source: check_circle
Crossref

Modifier Ontologies for frequency, certainty, degree, and coverage phenotype modifier

Biodiversity Data Journal
2018-11-28 | Journal article
Contributors: Lorena Endara; Anne Thessen; Heather Cole; Ramona Walls; Georgios Gkoutos; Yujie Cao; Steven Chong; Hong Cui
Source: check_circle
Crossref

A new paradigm for the scientific enterprise: nurturing the ecosystem [version 1; referees: 1 approved]

2018-06-20 | Journal article
Part of ISSN: 2046-1402
Contributors: Alexander K. Lancaster; Anne E. Thessen; Arika Virapongse
Source: check_circle
F1000
grade
Preferred source (of 2)‎

20 GB in 10 minutes: A case for linking major biodiversity databases using an open socio-technical infrastructure and a pragmatic, cross-institutional collaboration

2018-05-22 | Other
Contributors: Anne E Thessen; Jorrit H Poelen; Matthew Collins; Jen Hammock
Source: check_circle
Crossref

Automated Trait Extraction using ClearEarth, a Natural Language Processing System for Text Mining in Natural Sciences

Biodiversity Information Science and Standards
2018-05-22 | Journal article
Contributors: Anne Thessen; Jenette Preciado; Payoj Jain; James Martin; Martha Palmer; Riyaz Bhat
Source: check_circle
Crossref

Calculating in situ degradation rates of hydrocarbon compounds in deep waters of the Gulf of Mexico.

Source: Self-asserted source
Anne Thessen
grade
Preferred source (of 2)‎

Building Your Own Big Data Analysis Infrastructure for Biodiversity Science

Proceedings of TDWG
2017-08-10 | Journal article
Part of ISSN: 2535-0897
Contributors: Matthew Collins; Nicky Nicolson; Jorrit Poelen; Alexander Thompson; Jennifer Hammock; Anne Thessen
Source: Self-asserted source
Anne Thessen via Crossref Metadata Search

Synthesizer: Expediting synthesis studies from context-free data with information retrieval techniques

PLOS ONE
2017-04 | Journal article
Part of ISSN: 1932-6203
Contributors: Lisa M. Gandy; Jordan Gumm; Benjamin Fertig; Anne Thessen; Michael J. Kennish; Sameer Chavan; Luigi Marchionni; Xiaoxin Xia; Shambhavi Shankrit; Elana J. Fertig et al.
Source: Self-asserted source
Anne Thessen via Crossref Metadata Search

Synthesizer: Expediting synthesis studies from context-free data with natural language processing

2016-05-16 | Preprint
Contributors: Lisa Gandy; Jordan Gumm; Benjamin Fertig; Michael J. Kennish; Sameer Chavan; Ann Thessen; Luigi Marchionni; Xiaoxan Xia; Shambhavi Shankrit; Elana J Fertig
Source: check_circle
Crossref

Lessons learned while building the Deepwater Horizon Database: Toward improved data sharing in coastal science

Computers & Geosciences
2016-02 | Journal article
Contributors: Anne E. Thessen; Sean McGinnis; Elizabeth W. North
Source: Self-asserted source
Anne Thessen via Crossref Metadata Search

Emerging semantics to link phenotype and environment

PeerJ
2015 | Journal article
Contributors: Anne E. Thessen; Daniel E. Bunker; Pier Luigi Buttigieg; Laurel D. Cooper; Wasila M. Dahdul; Sami Domisch; Nico M. Franz; Pankaj Jaiswal; Carolyn J. Lawrence-Dill; Peter E. Midford et al.
Source: Self-asserted source
Anne Thessen via Crossref Metadata Search
grade
Preferred source (of 2)‎

Data Infrastructures for Estuarine and Coastal Ecological Syntheses

Estuaries and Coasts
2015-11-09 | Journal article
Contributors: Anne E. Thessen; Benjamin Fertig; Jessie C. Jarvis; Adelaide C. Rhodes
Source: Self-asserted source
Anne Thessen via Crossref Metadata Search
grade
Preferred source (of 2)‎

The influence of droplet size and biodegradation on the transport of subsurface oil droplets during the Deepwater Horizon spill: a model sensitivity study

Environ. Res. Lett.
2015-02-01 | Journal article
Contributors: Elizabeth W North; E Eric Adams; Anne E Thessen; Zachary Schlag; Ruoying He; Scott A Socolofsky; Stephen M Masutani; Scott D Peckham
Source: Self-asserted source
Anne Thessen via Crossref Metadata Search

Finding Our Way through Phenotypes

PLoS Biol
2015-01-06 | Journal article
Contributors: Andrew R. Deans; Suzanna E. Lewis; Eva Huala; Salvatore S. Anzaldo; Michael Ashburner; James P. Balhoff; David C. Blackburn; Judith A. Blake; J. Gordon Burleigh; Bruno Chanet et al.
Source: Self-asserted source
Anne Thessen via Crossref Metadata Search

A statistical assessment of population trends for data deficient Mexican amphibians

PeerJ
2014 | Journal article
Contributors: Esther Quintero; Anne E. Thessen; Paulina Arias-Caballero; Bárbara Ayala-Orozco
Source: Self-asserted source
Anne Thessen via Crossref Metadata Search
grade
Preferred source (of 2)‎

Semantic web and big data meets applied ontology

Applied Ontology
2014 | Journal article
EID:

2-s2.0-84933051332

Contributors: Obrst, L.; Gruninger, M.; Baclawski, K.; Bennett, M.; Brickley, D.; Berg-Cross, G.; Hitzler, P.; Janowicz, K.; Kapp, C.; Kutz, O. et al.
Source: Self-asserted source
Anne Thessen via Scopus - Elsevier

Knowledge Extraction and Semantic Annotation of Text from the Encyclopedia of Life

PLoS ONE
2014-03-03 | Journal article
Contributors: Anne E. Thessen; Cynthia Sims Parr; Luis M. Rocha
Source: Self-asserted source
Anne Thessen via Crossref Metadata Search

Data Conservancy Provenance, Context, and Lineage Services: Key Components for Data Preservation and Curation

Data Sci. J.
2013 | Journal article
Contributors: Matthew S. Mayernik; Tim DiLauro; Ruth Duerr; Elliot Metsger; Anne E. Thessen; G. Sayeed Choudhury
Source: Self-asserted source
Anne Thessen via Crossref Metadata Search

Geoinformatics: Toward an integrative view of Earth as a system

The Web of Geological Sciences: Advances, Impacts, and Interactions
2013-09 | Other
Contributors: A. Krishna Sinha; Anne E. Thessen; Calvin G. Barnes
Source: Self-asserted source
Anne Thessen via Crossref Metadata Search

Synthesis of primary production in the Arctic Ocean: III. Nitrate and phosphate based estimates of net community production

Progress in Oceanography
2013-03 | Journal article
Contributors: L.A. Codispoti; V. Kelly; A. Thessen; P. Matrai; S. Suttles; V. Hill; M. Steele; B. Light
Source: Self-asserted source
Anne Thessen via Crossref Metadata Search

Applications of Natural Language Processing in Biodiversity Science

2012 | Journal article
Source: Self-asserted source
Anne Thessen

The user's view on biodiversity data sharing — Investigating facts of acceptance and requirements to realize a sustainable use of research data —

2012-09 | Journal article
Source: Self-asserted source
Anne Thessen

The Taxonomic Significance of Species That Have Only Been Observed Once: The Genus Gymnodinium (Dinoflagellata) as an Example

PLoS ONE
2012-08 | Journal article
Contributors: Anne E. Thessen; David J. Patterson; Shauna A. Murray; Purificación López-García
Source: Self-asserted source
Anne Thessen via Crossref Metadata Search

Transcriptomics and microbial eukaryote diversity: a way forward

2012-08 | Journal article
Source: Self-asserted source
Anne Thessen

Pseudo-nitzschia physiological ecology, phylogeny, toxicity, monitoring and impacts on ecosystem health

2012-02 | Journal article
Source: Self-asserted source
Anne Thessen

Data issues in the life sciences

2011-11-28 | Journal article
Source: Self-asserted source
Anne Thessen

Meeting Report: BioSharing at ISMB 2010

2010 | Journal article
Source: Self-asserted source
Anne Thessen
grade
Preferred source (of 2)‎

A Global Census of Marine Microbes

2010-11-23 | Book chapter
Source: Self-asserted source
Anne Thessen

Crassostrea virginica grazing on toxic and non-toxic diatoms

Toxicon
2010-02 | Journal article
Contributors: A.E. Thessen; T.M. Soniat; Q. Dortch; G.J. Doucette
Source: Self-asserted source
Anne Thessen via Crossref Metadata Search

Intra- and interspecies differences in growth and toxicity of Pseudo-nitzschia while using different nitrogen sources

Harmful Algae
2009-06 | Journal article
Contributors: A.E. Thessen; H.A. Bowers; D.K. Stoecker
Source: Self-asserted source
Anne Thessen via Crossref Metadata Search

The effect of salinity on domoic acid production by the diatom Pseudo-nitzschia multiseries

Nova Hedwigia Beiheft
2008 | Journal article
Source: Self-asserted source
Anne Thessen

“Windows of opportunity” for dinoflagellate blooms: Reduced microzooplankton net growth coupled to eutrophication

2008-12 | Journal article
Source: Self-asserted source
Anne Thessen

Distribution, Abundance and Domoic Acid Analysis of the Toxic Diatom Genus Pseudo-nitzschia from the Chesapeake Bay

2008-09-14 | Journal article
Source: Self-asserted source
Anne Thessen

Effect of salinity on the distribution, growth, and toxicity of Karenia spp.

2006-03 | Journal article
Source: Self-asserted source
Anne Thessen

PSEUDO-NITZSCHIASPECIES (BACILLARIOPHYCEAE) GROWTH AND DISTRIBUTION

Source: Self-asserted source
Anne Thessen

Ecosystems Monitoring: An Information Extraction and Event Processing Scientific Workflow

Source: Self-asserted source
Anne Thessen
grade
Preferred source (of 2)‎

Peer review (4 reviews for 4 publications/grants)

Review activity for Applications in plant sciences. (1)
Review activity for BMC medical informatics and decision making (1)
Review activity for Genome medicine. (1)
Review activity for Journal of biomedical semantics. (1)