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ResearcherID: M-2655-2015
Loop profile: 9032

Countries

Belgium, Switzerland

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Employment (6)

Foundation for Research on Information Technologies in Society: Zürich, CH

2023-10-01 to present | Project Leader High Performance Neuroscience
Employment
Source: Self-asserted source
Werner Van Geit

École Polytechnique Fédérale de Lausanne: Lausanne, VD, CH

2011-02-15 to 2023-09-30 | Group Leader (Blue Brain Project)
Employment
Source: Self-asserted source
Werner Van Geit

EPFL - École Polytechnique Fédérale de Lausanne: Lausanne, CH

2011 to 2023
Employment
Source: check_circle
ORCID Integration at EPFL

EPFL - École Polytechnique Fédérale de Lausanne: Genève, CH

2011 to 2023 (VPA AVP Centres and platforms, Blue Brain Project, BBP-CORE)
Employment
Source: check_circle
ORCID Integration at EPFL

Universiteit Antwerpen: Antwerpen, BE

2003-09-31 to 2011-11-30 (Theoretical Neurobiology)
Employment
Source: Self-asserted source
Werner Van Geit

Okinawa Institute of Science and Technology Graduate University: Onna, JP

2007-06-01 to 2010-11-30 (Computiational Neuroscience Unit)
Employment
Source: Self-asserted source
Werner Van Geit

Education and qualifications (1)

University of Ghent: Ghent, BE

1999-10-01 to 2003-06-30 | Masters in Computer Science (Science)
Education
Source: Self-asserted source
Werner Van Geit

Professional activities (1)

Swiss Society for Neuroscience: Bern, CH

Membership
Source: Self-asserted source
Werner Van Geit

Works (43)

A universal workflow for creation, validation, and generalization of detailed neuronal models.

Patterns (New York, N.Y.)
2023-10 | Journal article
DOI: 10.1016/j.patter.2023.100855
PMID: 38035193
PMC: PMC10682753
Contributors: Reva M; Rössert C; Arnaudon A; Damart T; Mandge D; Tuncel A; Ramaswamy S; Markram H; Van Geit W
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

Controlling morpho-electrophysiological variability of neurons with detailed biophysical models.

iScience
2023-10 | Journal article
DOI: 10.1016/j.isci.2023.108222
PMID: 37953946
PMC: PMC10638024
Contributors: Arnaudon A; Reva M; Zbili M; Markram H; Van Geit W; Kanari L
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

Directional Sensitivity of Cortical Neurons Towards TMS Induced Electric Fields

2023-07-07 | Preprint
DOI: 10.1101/2023.07.06.547913
Contributors: Konstantin Weise; Torge Worbs; Benjamin Kalloch; Victor H. Souza; Aurélien Tristan Jaquier; Werner Van Geit; Axel Thielscher; Thomas R. Knösche
Source: check_circle
Crossref

Community-based Reconstruction and Simulation of a Full-scale Model of Region CA1 of Rat Hippocampus

2023-05 | Preprint
DOI: 10.1101/2023.05.17.541167
PPR: PPR661858
Contributors: Romani A; Antonietti A; Bella D; Budd J; Giacalone E; Kurban K; Sáray S; Abdellah M; Arnaudon A; Boci E et al.
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

Modeling and Simulation of Neocortical Micro- and Mesocircuitry. Part II: Physiology and Experimentation

2023-05 | Preprint
DOI: 10.1101/2023.05.17.541168
PPR: PPR661868
Contributors: Isbister JB; Ecker A; Pokorny C; Bolaños-Puchet S; Santander DE; Arnaudon A; Awile O; Natali B; Alonso JB; Boci E et al.
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

Associations between<i>in vitro</i>,<i>in vivo</i>and<i>in silico</i>cell classes in mouse primary visual cortex

2023-04 | Preprint
DOI: 10.1101/2023.04.17.532851
PPR: PPR646479
Contributors: Wei Y; Nandi A; Jia X; Siegle JH; Denman D; Lee SY; Buchin A; Geit WV; Mosher CP; Olsen S et al.
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

Associations between in vitro, in vivo and in silico cell classes in mouse primary visual cortex

Nature Communications
2023-04-24 | Journal article
DOI: 10.1038/s41467-023-37844-8
Contributors: Yina Wei; Anirban Nandi; Xiaoxuan Jia; Joshua H. Siegle; Daniel Denman; Soo Yeun Lee; Anatoly Buchin; Werner Van Geit; Clayton P. Mosher; Shawn Olsen et al.
Source: check_circle
Crossref

Controlling morpho-electrophysiological variability of neurons with detailed biophysical models

2023-04-06 | Preprint
DOI: 10.1101/2023.04.06.535923
Contributors: Alexis Arnaudon; Maria Reva; Mickael Zbili; Henry Markram; Werner Van Geit; Lida Kanari
Source: check_circle
Crossref

Thalamic control of sensory processing and spindles in a biophysical somatosensory thalamoreticular circuit model of wakefulness and sleep.

Cell reports
2023-03 | Journal article
DOI: 10.1016/j.celrep.2023.112200
PMID: 36867532
PMC: PMC10066598
Contributors: Iavarone E; Simko J; Shi Y; Bertschy M; García-Amado M; Litvak P; Kaufmann AK; O'Reilly C; Amsalem O; Abdellah M et al.
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

A universal workflow for creation, validation and generalization of detailed neuronal models

2022-12 | Preprint
DOI: 10.1101/2022.12.13.520234
PPR: PPR584236
Contributors: Reva M; Rössert C; Arnaudon A; Damart T; Mandge D; Tuncel A; Ramaswamy S; Markram H; Van Geit W
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

Single-neuron models linking electrophysiology, morphology, and transcriptomics across cortical cell types.

Cell reports
2022-11 | Journal article
DOI: 10.1016/j.celrep.2022.111659
PMID: 36351398
PMC: PMC9797078
Contributors: Nandi A; Chartrand T; Van Geit W; Buchin A; Yao Z; Lee SY; Wei Y; Kalmbach B; Lee B; Lein E et al.
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

A multi-modal fitting approach to construct single-neuron models with patch clamp and high-density microelectrode arrays

2022-08 | Preprint
DOI: 10.1101/2022.08.03.502468
PPR: PPR528934
Contributors: Buccino AP; Damart T; Bartram J; Mandge D; Xue X; Zbili M; Gänswein T; Jaquier A; Emmenegger V; Markram H et al.
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

Modeling and Simulation of Neocortical Micro- and Mesocircuitry. Part I: Anatomy

2022-08 | Preprint
DOI: 10.1101/2022.08.11.503144
PPR: PPR533360
Contributors: Reimann MW; Bolaños-Puchet S; Courcol J; Santander DE; Arnaudon A; Coste B; Delalondre F; Delemontex T; Devresse A; Dictus H et al.
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

Single-neuron models linking electrophysiology, morphology, and transcriptomics across cortical cell types.

Cell reports
2022-08 | Journal article
DOI: 10.1016/j.celrep.2022.111176
PMID: 35947954
PMC: PMC9793758
Contributors: Nandi A; Chartrand T; Van Geit W; Buchin A; Yao Z; Lee SY; Wei Y; Kalmbach B; Lee B; Lein E et al.
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

A calcium-based plasticity model for predicting long-term potentiation and depression in the neocortex.

Nature communications
2022-06 | Journal article
DOI: 10.1038/s41467-022-30214-w
PMID: 35650191
PMC: PMC9160074
Contributors: Chindemi G; Abdellah M; Amsalem O; Benavides-Piccione R; Delattre V; Doron M; Ecker A; Jaquier AT; King J; Kumbhar P et al.
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

Computational synthesis of cortical dendritic morphologies.

Cell reports
2022-04 | Journal article
DOI: 10.1016/j.celrep.2022.110586
PMID: 35385736
Contributors: Kanari L; Dictus H; Chalimourda A; Arnaudon A; Van Geit W; Coste B; Shillcock J; Hess K; Markram H
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

Statistical Emulation of Neural Simulators: Application to Neocortical L2/3 Large Basket Cells.

Frontiers in big data
2022-03 | Journal article
DOI: 10.3389/fdata.2022.789962
PMID: 35402905
PMC: PMC8992430
Contributors: Shapira G; Marcus-Kalish M; Amsalem O; Van Geit W; Segev I; Steinberg DM
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

Thalamic control of sensory enhancement and sleep spindle properties in a biophysical model of thalamoreticular microcircuitry

2022-03 | Preprint
DOI: 10.1101/2022.02.28.482273
PPR: PPR464075
Contributors: Iavarone E; Simko J; Shi Y; Bertschy M; García-Amado M; Litvak P; Kaufmann A; O’Reilly C; Amsalem O; Abdellah M et al.
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

HippoUnit: A software tool for the automated testing and systematic comparison of detailed models of hippocampal neurons based on electrophysiological data

PLOS Computational Biology
2021-01-29 | Journal article
DOI: 10.1371/journal.pcbi.1008114
Contributors: Sára Sáray; William W. Lytton; Christian A. Rössert; Shailesh Appukuttan; Rosanna Migliore; Paola Vitale; Carmen A. Lupascu; Luca L. Bologna; Werner Van Geit; Armando Romani et al.
Source: check_circle
Crossref

HippoUnit: A software tool for the automated testing and systematic comparison of detailed models of hippocampal neurons based on electrophysiological data

2020-07-02 | Preprint
DOI: 10.1101/2020.07.02.184333
Contributors: Sára Sáray; Christian A. Rössert; Shailesh Appukuttan; Rosanna Migliore; Paola Vitale; Carmen A. Lupascu; Luca L. Bologna; Werner Van Geit; Armando Romani; Andrew P. Davison et al.
Source: check_circle
Crossref

A calcium-based plasticity model predicts long-term potentiation and depression in the neocortex

2020-04 | Preprint
DOI: 10.1101/2020.04.19.043117
PPR: PPR152517
Contributors: Chindemi G; Abdellah M; Amsalem O; Benavides-Piccione R; Delattre V; Doron M; Ecker A; King J; Kumbhar P; Monney C et al.
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

Computational synthesis of cortical dendritic morphologies

2020-04 | Preprint
DOI: 10.1101/2020.04.15.040410
PPR: PPR151593
Contributors: Kanari L; Dictus H; Chalimourda A; Van Geit W; Coste B; Shillcock J; Hess K; Markram H
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

Single-neuron models linking electrophysiology, morphology and transcriptomics across cortical cell types

2020-04-10 | Preprint
DOI: 10.1101/2020.04.09.030239
Contributors: Anirban Nandi; Tom Chartrand; Werner Van Geit; Anatoly Buchin; Zizhen Yao; Soo Yeun Lee; Yina Wei; Brian Kalmbach; Brian Lee; Ed Lein et al.
Source: check_circle
Crossref

The SONATA data format for efficient description of large-scale network models.

PLoS computational biology
2020-02 | Journal article
DOI: 10.1371/journal.pcbi.1007696
PMID: 32092054
PMC: PMC7058350
Contributors: Dai K; Hernando J; Billeh YN; Gratiy SL; Planas J; Davison AP; Dura-Bernal S; Gleeson P; Devresse A; Dichter BK et al.
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

Open Source Brain: A Collaborative Resource for Visualizing, Analyzing, Simulating, and Developing Standardized Models of Neurons and Circuits.

Neuron
2019-06 | Journal article
DOI: 10.1016/j.neuron.2019.05.019
PMID: 31201122
PMC: PMC6693896
Contributors: Gleeson P; Cantarelli M; Marin B; Quintana A; Earnshaw M; Sadeh S; Piasini E; Birgiolas J; Cannon RC; Cayco-Gajic NA et al.
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

The SONATA Data Format for Efficient Description of Large-Scale Network Models

2019-05 | Preprint
DOI: 10.1101/625491
PPR: PPR78006
Contributors: Dai K; Hernando J; Billeh YN; Gratiy SL; Planas J; Davison AP; Dura-Bernal S; Gleeson P; Devresse A; Dichter BK et al.
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

Experimentally-constrained biophysical models of tonic and burst firing modes in thalamocortical neurons

PLOS Computational Biology
2019-05-16 | Journal article
DOI: 10.1371/journal.pcbi.1006753
Contributors: Elisabetta Iavarone; William W. Lytton; Jane Yi; Ying Shi; Bas-Jan Zandt; Christian O’Reilly; Werner Van Geit; Christian Rössert; Henry Markram; Sean L. Hill
Source: check_circle
Crossref

Experimentally-constrained biophysical models of tonic and burst firing modes in thalamocortical neurons

2019-01-04 | Other
DOI: 10.1101/512269
Contributors: Elisabetta Iavarone; Jane Yi; Ying Shi; Bas-Jan Zandt; Christian O’Reilly; Werner Van Geit; Christian A. Rössert; Henry Markram; Sean L. Hill
Source: check_circle
Crossref

The physiological variability of channel density in hippocampal CA1 pyramidal cells and interneurons explored using a unified data-driven modeling workflow

PLOS Computational Biology
2018-09-17 | Journal article
DOI: 10.1371/journal.pcbi.1006423
Contributors: Rosanna Migliore; William W Lytton; Carmen A. Lupascu; Luca L. Bologna; Armando Romani; Jean-Denis Courcol; Stefano Antonel; Werner A. H. Van Geit; Alex M. Thomson; Audrey Mercer et al.
Source: check_circle
Crossref

Open Source Brain: a collaborative resource for visualizing, analyzing, simulating and developing standardized models of neurons and circuits

2018-01 | Preprint
DOI: 10.1101/229484
PPR: PPR19977
Contributors: Gleeson P; Cantarelli M; Marin B; Quintana A; Earnshaw M; Piasini E; Birgiolas J; Cannon RC; Cayco-Gajic NA; Crook S et al.
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

Single Neuron Optimization as a Basis for Accurate Biophysical Modeling: The Case of Cerebellar Granule Cells.

Frontiers in cellular neuroscience
2017-03 | Journal article
DOI: 10.3389/fncel.2017.00071
PMID: 28360841
PMC: PMC5350144
Contributors: Masoli S; Rizza MF; Sgritta M; Van Geit W; Schürmann F; D'Angelo E
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

26th Annual Computational Neuroscience Meeting (CNS*2017): Part 2

BMC neuroscience
2017-01 | Journal article
PMC: PMC5592442
Contributors: Rubchinsky L; Ahn S; Klijn W; Cumming B; Yates S; Karakasis V; Peyser A; Woodman M; Diaz-Pier S; Deraeve J et al.
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

26th Annual Computational Neuroscience Meeting (CNS*2017): Part 3

BMC neuroscience
2017-01 | Journal article
PMC: PMC5592441
Contributors: Newton A; Seidenstein A; McDougal R; Pérez-Cervera A; Huguet G; M-Seara T; Haimerl C; Angulo-Garcia D; Torcini A; Cossart R et al.
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

From Neuron Biophysics to Orientation Selectivity in Electrically Coupled Networks of Neocortical L2/3 Large Basket Cells.

Cerebral cortex (New York, N.Y. : 1991)
2016-06 | Journal article
DOI: 10.1093/cercor/bhw166
PMID: 27288316
PMC: PMC4961030
Contributors: Amsalem O; Van Geit W; Muller E; Markram H; Segev I
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

BluePyOpt: Leveraging Open Source Software and Cloud Infrastructure to Optimise Model Parameters in Neuroscience

Frontiers in Neuroinformatics
2016-06-07 | Journal article
DOI: 10.3389/fninf.2016.00017
Part of ISSN: 1662-5196
Source: Self-asserted source
Werner Van Geit

Hybrid Parameter Optimization Methods

Encyclopedia of Computational Neuroscience
2015 | Other
DOI: 10.1007/978-1-4614-6675-8_164
Contributors: Werner Van Geit
Source: Self-asserted source
Werner Van Geit via Crossref Metadata Search

Reconstruction and Simulation of Neocortical Microcircuitry.

2015-10 | Journal article
DOI: 10.1016/j.cell.2015.09.029
PMID: 26451489
Contributors: Markram H; Muller E; Ramaswamy S; Reimann MW; Abdellah M; Sanchez CA; Ailamaki A; Alonso-Nanclares L; Antille N; Arsever S et al.
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

The neocortical microcircuit collaboration portal: a resource for rat somatosensory cortex

Front. Neural Circuits
2015-10-08 | Journal article
DOI: 10.3389/fncir.2015.00044
Contributors: Srikanth Ramaswamy; Jean-Denis Courcol; Marwan Abdellah; Stanislaw R. Adaszewski; Nicolas Antille; Selim Arsever; Guy Atenekeng; Ahmet Bilgili; Yury Brukau; Athanassia Chalimourda et al.
Source: Self-asserted source
Werner Van Geit via Crossref Metadata Search

Neurofitter

Encyclopedia of Computational Neuroscience
2014 | Other
DOI: 10.1007/978-1-4614-7320-6_167-1
Contributors: Werner Van Geit
Source: Self-asserted source
Werner Van Geit via Crossref Metadata Search

Modeling Complex Neurons

Computational Modeling Methods for Neuroscientists
2009-09-04 | Other
DOI: 10.7551/mitpress/9780262013277.003.0012
Contributors: Erik De Schutter; Werner Van Geit
Source: Self-asserted source
Werner Van Geit via Crossref Metadata Search

Parameter Searching

Computational Modeling Methods for Neuroscientists
2009-09-04 | Other
DOI: 10.7551/mitpress/9780262013277.003.0003
Contributors: Pablo Achard; Werner Van Geit; Gwendal LeMasson
Source: Self-asserted source
Werner Van Geit via Crossref Metadata Search

Neurofitter: a parameter tuning package for a wide range of electrophysiological neuron models.

2007 | Journal article
DOI: 10.3389/neuro.11.001.2007
PMID: 18974796
PMC: PMC2525995
Contributors: Van Geit W; Achard P; De Schutter E
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

Neurofitter: a parameter tuning package for a wide range of electrophysiological neuron models.

2007 | Journal article
PMC: PMC4436405
Contributors: Van Geit W; Achard P; De Schutter E
Source: Self-asserted source
Werner Van Geit via Europe PubMed Central

Peer review (1 review for 1 publication/grant)

Review activity for PLoS computational biology. (1)
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