Personal information

Emails & domains

Verified email domains

Websites & social links

http://www.sternadi.com

Activities

Collapse all

Employment (2)

Tel Aviv University: Tel Aviv, IL

2020-06-01 to present (Department Of Molecular Microbiology And Bio)
Employment
Source: check_circle
Tel Aviv University

Tel Aviv University: Tel Aviv, IL

2014-10-01 to present (Dept. Of Molecular Microbiology & Biotechnolgy)
Employment
Source: check_circle
Tel Aviv University

Works (39)

Diverse patterns of intra-host genetic diversity in chronically infected SARS-CoV-2 patients

2024-11-25 | Preprint
DOI: 10.1101/2024.11.23.624482
Contributors: Natalie Rutsinsky; Adi Ben Zvi; Ido Fabian; Shir T. Segev; Bar Jacobi; Sheri Harari; Suzy Meijers; Yael Paran; Adi Stern
Source: check_circle
Crossref

Using big sequencing data to identify chronic SARS-Coronavirus-2 infections

Nature Communications
2024-01-20 | Journal article
DOI: 10.1038/s41467-024-44803-4
Contributors: Sheri Harari; Danielle Miller; Shay Fleishon; David Burstein; Adi Stern
Source: check_circle
Crossref

Using big sequencing data to identify chronic SARS-Coronavirus-2 infections

2023-07-17 | Preprint
DOI: 10.1101/2023.07.16.549184
Contributors: Sheri Harari; Danielle Miller; Shay Fleishon; David Burstein; Adi Stern
Source: check_circle
Crossref

Mutation rate, selection, and epistasis inferred from RNA virus haplotypes via neural posterior estimation

Virus Evolution
2023-06-09 | Journal article
DOI: 10.1093/ve/vead033
Contributors: Itamar Caspi; Moran Meir; Nadav Ben Nun; Reem Abu Rass; Uri Yakhini; Adi Stern; Yoav Ram
Source: check_circle
Crossref

Mutation rate, selection, and epistasis inferred from RNA virus haplotypes via neural posterior estimation

2023-01-09 | Preprint
DOI: 10.1101/2023.01.09.523230
Contributors: Itamar Caspi; Moran Meir; Nadav Ben Nun; Uri Yakhini; Adi Stern; Yoav Ram
Source: check_circle
Crossref

Deciphering microbial gene function using natural language processing

Nature Communications
2022-09-29 | Journal article
DOI: 10.1038/s41467-022-33397-4
Contributors: Danielle Miller; Adi Stern; David Burstein
Source: check_circle
Crossref

Drivers of adaptive evolution during chronic SARS-CoV-2 infections.

Nature medicine
2022-06 | Journal article
DOI: 10.1038/s41591-022-01882-4
PMID: 35725921
PMC: PMC9307477
Contributors: Harari S; Tahor M; Rutsinsky N; Meijer S; Miller D; Henig O; Halutz O; Levytskyi K; Ben-Ami R; Adler A et al.
Source: Self-asserted source
Adi Stern via Europe PubMed Central

In vivo engineered B cells secrete high titers of broadly neutralizing anti-HIV antibodies in mice.

Nature biotechnology
2022-06 | Journal article
DOI: 10.1038/s41587-022-01328-9
PMID: 35681059
PMC: PMC7613293
Contributors: Nahmad AD; Lazzarotto CR; Zelikson N; Kustin T; Tenuta M; Huang D; Reuveni I; Nataf D; Raviv Y; Horovitz-Fried M et al.
Source: Self-asserted source
Adi Stern via Europe PubMed Central

The unique evolutionary dynamics of the SARS-CoV-2 Delta variant

2021-08-07 | Preprint
DOI: 10.1101/2021.08.05.21261642
Contributors: Adi Stern; Shay Fleishon; Talia Kustin; Edo Dotan; Michal Mandelboim; Oran Erster; Ella Mendelson; Orna Mor; Neta S. Zuckerman
Source: check_circle
Crossref

Unraveling a Nosocomial Outbreak of COVID-19: The Role of Whole Genome Sequence Analysis

Open forum infectious diseases
2021-03 | Journal article
PMC: PMC7989189
Contributors: Meijer S; Harel N; Ben-Ami R; Nahari M; Yakubovsky M; Oster H; Kolomansky A; Halutz O; Laskar O; Henig O et al.
Source: Self-asserted source
Adi Stern via Europe PubMed Central

Biased Mutation and Selection in RNA Viruses.

Molecular biology and evolution
2021-01 | Journal article
DOI: 10.1093/molbev/msaa247
PMID: 32986832
PMC: PMC7543401
Contributors: Kustin T; Stern A
Source: Self-asserted source
Adi Stern via Europe PubMed Central
grade
Preferred source (of 2)‎

Globally defining the effects of mutations in a picornavirus capsid.

eLife
2021-01 | Journal article
DOI: 10.7554/elife.64256
PMID: 33432927
PMC: PMC7861617
Contributors: Mattenberger F; Latorre V; Tirosh O; Stern A; Geller R
Source: Self-asserted source
Adi Stern via Europe PubMed Central
grade
Preferred source (of 2)‎

Drivers of within-host genetic diversity in acute infections of viruses.

PLoS pathogens
2020-11 | Journal article
DOI: 10.1371/journal.ppat.1009029
PMID: 33147296
PMC: PMC7668575
Contributors: Gelbart M; Harari S; Ben-Ari Y; Kustin T; Wolf D; Mandelboim M; Mor O; Pennings PS; Stern A
Source: Self-asserted source
Adi Stern via Europe PubMed Central
grade
Preferred source (of 2)‎

Full genome viral sequences inform patterns of SARS-CoV-2 spread into and within Israel.

Nature communications
2020-11 | Journal article
DOI: 10.1038/s41467-020-19248-0
PMID: 33139704
PMC: PMC7606475
Contributors: Miller D; Martin MA; Harel N; Tirosh O; Kustin T; Meir M; Sorek N; Gefen-Halevi S; Amit S; Vorontsov O et al.
Source: Self-asserted source
Adi Stern via Europe PubMed Central

Site-Specific Evolutionary Rate Shifts in HIV-1 and SIV

Viruses
2020-11 | Journal article | Author
DOI: 10.3390/v12111312
Contributors: Maoz Gelbart; Adi Stern
Source: check_circle
Multidisciplinary Digital Publishing Institute
grade
Preferred source (of 2)‎

Globally defining the effects of mutations in a picornavirus capsid

2020-10 | Preprint
DOI: 10.1101/2020.10.06.327916
OTHER-ID:

PPR222627
Contributors: Mattenberger F; Latorre V; Tirosh O; Stern A; Geller R
Source: Self-asserted source
Adi Stern via Europe PubMed Central

Competition between social cheater viruses is driven by mechanistically different cheating strategies.

Science advances
2020-08 | Journal article
DOI: 10.1126/sciadv.abb7990
PMID: 32937370
PMC: PMC7442481
Contributors: Meir M; Harel N; Miller D; Gelbart M; Eldar A; Gophna U; Stern A
Source: Self-asserted source
Adi Stern via Europe PubMed Central
grade
Preferred source (of 2)‎

Full genome viral sequences inform patterns of SARS-CoV-2 spread into and within Israel

2020-05 | Preprint
DOI: 10.1101/2020.05.21.20104521
OTHER-ID:

PPR166504
Contributors: Miller D; Martin MA; Harel N; Kustin T; Tirosh O; Meir M; Sorek N; Gefen-Halevi S; Amit S; Vorontsov O et al.
Source: Self-asserted source
Adi Stern via Europe PubMed Central

A Bayesian Framework for Inferring the Influence of Sequence Context on Point Mutations.

Molecular biology and evolution
2020-03 | Journal article
DOI: 10.1093/molbev/msz248
PMID: 31651955
PMC: PMC7038660
Contributors: Ling G; Miller D; Nielsen R; Stern A
Source: Self-asserted source
Adi Stern via Europe PubMed Central

Direct sequencing of RNA with MinION Nanopore: detecting mutations based on associations.

Nucleic acids research
2019-12 | Journal article
DOI: 10.1093/nar/gkz907
PMID: 31665473
PMC: PMC7107797
Contributors: Harel N; Meir M; Gophna U; Stern A
Source: Self-asserted source
Adi Stern via Europe PubMed Central

A Bayesian framework for inferring the influence of sequence context on single base modifications

2019-03 | Preprint
DOI: 10.1101/571646
OTHER-ID:

PPR72619
Contributors: Ling G; Miller D; Nielsen R; Stern A
Source: Self-asserted source
Adi Stern via Europe PubMed Central

Direct Sequencing of RNA with MinION Nanopore: Detecting Mutations based on Associations

2019-03 | Preprint
DOI: 10.1101/575480
OTHER-ID:

PPR72940
Contributors: Harel N; Meir M; Gophna U; Stern A
Source: Self-asserted source
Adi Stern via Europe PubMed Central

A method to identify respiratory virus infections in clinical samples using next-generation sequencing.

Scientific reports
2019-02 | Journal article
DOI: 10.1038/s41598-018-37483-w
PMID: 30796243
PMC: PMC6384955
Contributors: Kustin T; Ling G; Sharabi S; Ram D; Friedman N; Zuckerman N; Bucris ED; Glatman-Freedman A; Stern A; Mandelboim M
Source: Self-asserted source
Adi Stern via Europe PubMed Central

Correction: Modeling suggests that microliter volumes of contaminated blood caused an outbreak of hepatitis C during computerized tomography.

PloS one
2019-02 | Journal article
DOI: 10.1371/journal.pone.0212252
PMID: 30731001
PMC: PMC6366869
Contributors: Shteyer E; Shekhtman L; Zinger T; Harari S; Gafanovich I; Wolf D; Ivgi H; Barsuk R; Dery I; Armoni D et al.
Source: Self-asserted source
Adi Stern via Europe PubMed Central

Inferring population genetics parameters of evolving viruses using time-series data.

Virus evolution
2019-01 | Journal article
DOI: 10.1093/ve/vez011
PMID: 31191979
PMC: PMC6555871
Contributors: Zinger T; Gelbart M; Miller D; Pennings PS; Stern A
Source: Self-asserted source
Adi Stern via Europe PubMed Central

Modeling suggests that microliter volumes of contaminated blood caused an outbreak of hepatitis C during computerized tomography.

PloS one
2019-01 | Journal article
DOI: 10.1371/journal.pone.0210173
PMID: 30645600
PMC: PMC6333404
Contributors: Shteyer E; Shekhtman L; Zinger T; Harari S; Gafanovich I; Wolf D; Ivgi H; Barsuk R; Dery I; Armoni D et al.
Source: Self-asserted source
Adi Stern via Europe PubMed Central

Correction: Within-patient mutation frequencies reveal fitness costs of CpG dinucleotides and drastic amino acid changes in HIV.

PLoS genetics
2018-12 | Journal article
DOI: 10.1371/journal.pgen.1007855
PMID: 30532173
PMC: PMC6287806
Contributors: Theys K; Feder AF; Gelbart M; Hartl M; Stern A; Pennings PS
Source: Self-asserted source
Adi Stern via Europe PubMed Central

Inferring Population Genetics Parameters of Evolving Viruses Using Time-series Data

2018-10 | Preprint
DOI: 10.1101/437483
OTHER-ID:

PPR57817
Contributors: Zinger T; Pennings PS; Stern A
Source: Self-asserted source
Adi Stern via Europe PubMed Central
grade
Preferred source (of 2)‎

Accurate in vivo population sequencing uncovers drivers of within-host genetic diversity in viruses

2018-06 | Preprint
DOI: 10.1101/349498
OTHER-ID:

PPR7606
Contributors: Gelbart M; Harari S; Ben-Ari Y; Kustin T; Wolf D; Mandelboim M; Mor O; Pennings P; Stern A
Source: Self-asserted source
Adi Stern via Europe PubMed Central
grade
Preferred source (of 2)‎

Within-patient mutation frequencies reveal fitness costs of CpG dinucleotides and drastic amino acid changes in HIV.

PLoS genetics
2018-06 | Journal article
DOI: 10.1371/journal.pgen.1007420
PMID: 29953449
PMC: PMC6023119
Contributors: Theys K; Feder AF; Gelbart M; Hartl M; Stern A; Pennings PS
Source: Self-asserted source
Adi Stern via Europe PubMed Central

Evolutionary rate shifts suggest species-specific adaptation events in HIV-1 and SIV

2017-09 | Preprint
DOI: 10.1101/190769
OTHER-ID:

PPR19729
Contributors: Gelbart M; Stern A
Source: Self-asserted source
Adi Stern via Europe PubMed Central
grade
Preferred source (of 2)‎

The Evolutionary Pathway to Virulence of an RNA Virus.

Cell
2017-03 | Journal article
DOI: 10.1016/j.cell.2017.03.013
PMID: 28340348
PMC: PMC5787669
Contributors: Stern A; Yeh MT; Zinger T; Smith M; Wright C; Ling G; Nielsen R; Macadam A; Andino R
Source: Self-asserted source
Adi Stern via Europe PubMed Central

Within-patient mutation frequencies reveal fitness costs of CpG dinucleotides and drastic amino acid changes in HIV

2016-06-03 | Preprint
DOI: 10.1101/057026
Contributors: Kristof Theys; Alison F. Feder; Maoz Gelbart; Marion Hartl; Adi Stern; Pleuni S. Pennings
Source: check_circle
Crossref

Viral Evolution : It Is All About Mutations

Viral Pathogenesis
2016-01 | Journal article
PMC: PMC7149360
Contributors: Stern A; Andino R; Katze M; Korth M; Law G; Nathanson N
Source: Self-asserted source
Adi Stern via Europe PubMed Central

Costs and benefits of mutational robustness in RNA viruses.

Cell reports
2014-08 | Journal article
DOI: 10.1016/j.celrep.2014.07.011
PMID: 25127138
PMC: PMC4142091
Contributors: Stern A; Bianco S; Yeh MT; Wright C; Butcher K; Tang C; Nielsen R; Andino R
Source: Self-asserted source
Adi Stern via Europe PubMed Central

CRISPR and RNA interference: similarities across immune systems: comment on "Diversity, evolution, and therapeutic applications of small RNAs in prokaryotic and eukaryotic immune systems" by Edwin L. Cooper and Nicola Overstreet.

Physics of life reviews
2013-11 | Journal article
DOI: 10.1016/j.plrev.2013.11.004
PMID: 24268489
Contributors: Stern A
Source: Self-asserted source
Adi Stern via Europe PubMed Central

Synonymous site conservation in the HIV-1 genome.

BMC evolutionary biology
2013-08 | Journal article
DOI: 10.1186/1471-2148-13-164
PMID: 23914950
PMC: PMC3750384
Contributors: Mayrose I; Stern A; Burdelova EO; Sabo Y; Laham-Karam N; Zamostiano R; Bacharach E; Pupko T
Source: Self-asserted source
Adi Stern via Europe PubMed Central

Holding a grudge: persisting anti-phage CRISPR immunity in multiple human gut microbiomes.

RNA biology
2013-02 | Journal article
DOI: 10.4161/rna.23929
PMID: 23439321
PMC: PMC3737347
Contributors: Mick E; Stern A; Sorek R
Source: Self-asserted source
Adi Stern via Europe PubMed Central

CRISPR targeting reveals a reservoir of common phages associated with the human gut microbiome.

Genome research
2012-06 | Journal article
DOI: 10.1101/gr.138297.112
PMID: 22732228
PMC: PMC3460193
Contributors: Stern A; Mick E; Tirosh I; Sagy O; Sorek R
Source: Self-asserted source
Adi Stern via Europe PubMed Central

Peer review (419 reviews for 5 publications/grants)

Review activity for Nature (2)
Review activity for Nature communications (3)
Review activity for Nature medicine. (1)
Review activity for PLoS biology. (1)
Review activity for The ISME journal (412)
How many people are using ORCID?