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ResearcherID: A-3164-2013

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Works (29)

Beyond Barrels: Diverse Thalamocortical Projection Motifs in the Mouse Ventral Posterior Complex

The Journal of Neuroscience
2024-10-23 | Journal article
DOI: 10.1523/JNEUROSCI.1096-24.2024
Contributors: Mario Rubio-Teves; Pablo Martín-Correa; Carmen Alonso-Martínez; Diana Casas-Torremocha; María García-Amado; Nestor Timonidis; Francesco J. Sheiban; Rembrandt Bakker; Paul Tiesinga; César Porrero et al.
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Crossref

Multi-scale spiking network model of human cerebral cortex

Cerebral Cortex
2024-10-03 | Journal article
DOI: 10.1093/cercor/bhae409
Contributors: Jari Pronold; Alexander van Meegen; Renan O Shimoura; Hannah Vollenbröker; Mario Senden; Claus C Hilgetag; Rembrandt Bakker; Sacha J van Albada
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Crossref

Precise registration of axonal morphologies obtained from sections to a common reference space

ScienceOpen Posters
2023-07 | Conference poster
DOI: 10.14293/P2199-8442.1.SOP-.PJ4UFX.v1
Contributors: Maria Carla Piastra; Rembrandt Bakker; Maria Garcia-Amado; Mario Rubio-Teves; Francisco Clascá; Paul Tiesinga
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ScienceOpen, Inc.
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MEBRAINS 1.0: a new population-based macaque atlas

2023-06-24 | Preprint
DOI: 10.1101/2023.06.21.545953
Contributors: Puiu F Balan; Qi Zhu; Xiaolian Li; Meiqi Niu; Lucija Rapan; Thomas Funck; Rembrandt Bakker; Nicola Palomero-Gallagher; Wim Vanduffel
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Crossref

Reconstructing axons from sectioned brains through alignment and stitching

ScienceOpen Posters
2023-04 | Conference poster
DOI: 10.14293/P2199-8442.1.SOP-.PTPVJ0.v1
Contributors: Rembrandt Bakker; Mario Rubio-Teves; Nestor Timonidis; María García-Amado; Francisco Clascá; Paul Tiesinga
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ScienceOpen, Inc.
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Multi-Scale Spiking Network Model of Human Cerebral Cortex

2023-03-25 | Preprint
DOI: 10.1101/2023.03.23.533968
Contributors: Jari Pronold; Alexander van Meegen; Hannah Vollenbröker; Renan O. Shimoura; Mario Senden; Claus C. Hilgetag; Rembrandt Bakker; Sacha J. van Albada
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Crossref

Prediction of a Cell-Class-Specific Mouse Mesoconnectome Using Gene Expression Data

Neuroinformatics
2020-10 | Journal article
DOI: 10.1007/s12021-020-09471-x
Part of ISSN: 1539-2791
Part of ISSN: 1559-0089
Contributors: Nestor Timonidis; Rembrandt Bakker; Paul Tiesinga; Rembrandt Bakker
Source: Self-asserted source
Rembrandt Bakker

A multi-scale layer-resolved spiking network model of resting-state dynamics in macaque visual cortical areas

PLOS Computational Biology
2018-10-18 | Journal article
DOI: 10.1371/journal.pcbi.1006359
Contributors: Maximilian Schmidt; Lyle J. Graham; Rembrandt Bakker; Kelly Shen; Gleb Bezgin; Markus Diesmann; Sacha Jennifer van Albada
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Crossref

Multi-scale account of the network structure of macaque visual cortex

Brain Structure and Function
2018-04-16 | Journal article
DOI: 10.1007/s00429-017-1554-4
Contributors: Maximilian Schmidt; Rembrandt Bakker; Claus C. Hilgetag; Markus Diesmann; Sacha J. van Albada
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Crossref

Mapping complementary features of cross-species structural connectivity to construct realistic "Virtual Brains".

Human brain mapping
2017-04 | Journal article
DOI: 10.1002/hbm.23506
PMID: 28054725
Source: Self-asserted source
Rembrandt Bakker via Europe PubMed Central

The missing link: Predicting connectomes from noisy and partially observed tract tracing data

PLOS Computational Biology
2017-01-31 | Journal article
DOI: 10.1371/journal.pcbi.1005374
Contributors: Max Hinne; Eric Jonas; Annet Meijers; Rembrandt Bakker; Paul H. E. Tiesinga; Morten Mørup; Marcel A. J. van Gerven
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Crossref

Anatomical landmarks for registration of experimental image data to volumetric rodent brain atlasing templates

Journal of Neuroscience Methods
2015 | Journal article
DOI: 10.1016/j.jneumeth.2014.11.005
WOSUID:

WOS:000347867500017
Contributors: Sergejeva, Marina; Papp, Eszter A.; Bakker, Rembrandt; Gaudnek, Manuel A.; Okamura-Oho, Yuko; Boline, Jyl; Bjaalie, Jan G.; Hess, Andreas
Source: Self-asserted source
Rembrandt Bakker via ResearcherID

The Scalable Brain Atlas: Instant Web-Based Access to Public Brain Atlases and Related Content

Neuroinformatics
2015 | Journal article
DOI: 10.1007/s12021-014-9258-x
WOSUID:

WOS:000356310900007
Contributors: Bakker, Rembrandt; Tiesinga, Paul; Kotter, Rolf
Source: Self-asserted source
Rembrandt Bakker via ResearcherID

Feeding the human brain model

Current Opinion in Neurobiology
2015-06 | Journal article
DOI: 10.1016/j.conb.2015.02.003
Contributors: Paul Tiesinga; Rembrandt Bakker; Sean Hill; Jan G Bjaalie
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Crossref
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Auditory-prefrontal axonal connectivity in the macaque cortex: Quantitative assessment of processing streams

Brain and Language
2014 | Journal article
DOI: 10.1016/j.bandl.2014.05.006
WOSUID:

WOS:000340316400009
Contributors: Bezgin, Gleb; Rybacki, Konrad; van Opstal, A. John; Bakker, Rembrandt; Shen, Kelly; Vakorin, Vasily A.; McIntosh, Anthony R.; Koetter, Rolf
Source: Self-asserted source
Rembrandt Bakker via ResearcherID

VisNEST — Interactive analysis of neural activity data

2013 IEEE Symposium on Biological Data Visualization (BioVis)
2013-10 | Conference paper
DOI: 10.1109/biovis.2013.6664348
Part of ISBN: 9781479916580
Contributors: Christian Nowke; Maximilian Schmidt; Sacha J. van Albada; Jochen M. Eppler; Rembrandt Bakker; Markus Diesrnann; Bernd Hentschel; Torsten Kuhlen
Source: Self-asserted source
Rembrandt Bakker via Crossref Metadata Search

CoCoMac 2.0 and the future of tract-tracing databases

Front Neuroinform
2012 | Journal article
DOI:

10.3389/fninf.2012.00030
Contributors: Bakker, R.; Wachtler, T.; Diesmann, M.
Source: Self-asserted source
Rembrandt Bakker via ResearcherID

Creating INCF digital atlas hubs through registration workflows

Society for Neuroscience Abstract Viewer and Itinerary Planner
2012 | Journal article
Contributors: Boline, J. K.; Avants, B.; Baldock, R.; Bakker, R.; Burger, A.; Gee, J.; Haselgrove, C.; Hess, A.; Ibanez, L.; Larson, S. et al.
Source: Self-asserted source
Rembrandt Bakker via ResearcherID

Hundreds of brain maps in one atlas: Registering coordinate-independent primate neuro-anatomical data to a standard brain

Neuroimage
2012 | Journal article
DOI:

10.1016/j.neuroimage.2012.04.013
Contributors: Bezgin, Gleb; Vakorin, Vasily A.; van Opstal, A. John; McIntosh, Anthony R.; Bakker, Rembrandt
Source: Self-asserted source
Rembrandt Bakker via ResearcherID

Incf digital atlasing program: bringing data into an atlas-based sharing framework

Society for Neuroscience Abstract Viewer and Itinerary Planner
2011 | Journal article
Contributors: Boline, J. K.; Baldock, R.; Bakker, R.; Breeze, J.; Burger, A.; Gee, J.; Haselgrove, C.; Hawrylycz, M.; Hess, A.; Ibanez, L. et al.
Source: Self-asserted source
Rembrandt Bakker via ResearcherID

Brain connectivity at your fingertips: CoCoMac interfaced with the scalable brain atlas

Society for Neuroscience Abstract Viewer and Itinerary Planner
2010 | Journal article
Contributors: Bakker, R.; Bezgin, G.; Kotter, R.
Source: Self-asserted source
Rembrandt Bakker via ResearcherID

INCF digital atlasing program, building on Waxholm space (WHS) and the digital brain infrastructure (DAI)

Society for Neuroscience Abstract Viewer and Itinerary Planner
2010 | Journal article
Contributors: Boline, J. K.; Bakker, R.; Baldock, R.; Breeze, J.; Burger, A.; Haselgrove, C.; Hawrylycz, M.; Hess, A.; Johnson, G.; Larson, S. et al.
Source: Self-asserted source
Rembrandt Bakker via ResearcherID

Classification of cortical microcircuits based on micro-electrode-array data from slices of rat barrel cortex

Neural Networks
2009 | Journal article
DOI:

10.1016/j.neunet.2009.07.014
Contributors: Bakker, Rembrandt; Schubert, Dirk; Levels, Koen; Bezgin, Gleb; Bojak, Ingo; Kotter, Rolf
Source: Self-asserted source
Rembrandt Bakker via ResearcherID

Uncovering nonlinear dynamics - The case study of sea clutter

Proceedings of the Ieee
2002 | Journal article
DOI:

10.1109/jproc.2002.1015011
Contributors: Haykin, S.; Bakker, R.; Currie, B. W.
Source: Self-asserted source
Rembrandt Bakker via ResearcherID

Optimum NOx abatement in diesel exhaust using inferential feedforward reductant control

Fuel
2001 | Journal article
DOI:

10.1016/s0016-2361(00)00188-5
Contributors: Krijnsen, H. C.; van Leeuwen, J. C. M.; Bakker, R.; van den Bleek, C. M.; Calis, H. P. A.
Source: Self-asserted source
Rembrandt Bakker via ResearcherID

Evaluation of fit algorithms for NOx emission prediction for efficient DeNO(x) control of transient diesel engine exhaust gas

Industrial & Engineering Chemistry Research
2000 | Journal article
DOI:

10.1021/ie9906666
Contributors: Krijnsen, H. C.; Bakker, R.; van Kooten, W. E. J.; Calis, H. P. A.; Verbeek, R. P.; van den Bleek, C. M.
Source: Self-asserted source
Rembrandt Bakker via ResearcherID

Learning chaotic attractors by neural networks

Neural Computation
2000 | Journal article
DOI:

10.1162/089976600300014971
Contributors: Bakker, R.; Schouten, J. C.; Giles, C. L.; Takens, F.; van den Bleek, C. M.
Source: Self-asserted source
Rembrandt Bakker via ResearcherID

Neural networks for prediction and control of chaotic fluidized bed hydrodynamics: A first step

Fractals-an Interdisciplinary Journal on the Complex Geometry of Nature
1997 | Journal article
DOI:

10.1142/s0218348x97000413
Contributors: Bakker, R.; De Korte, R. J.; Schouten, J. C.; Van den Bleek, C. M.; Takens, F.
Source: Self-asserted source
Rembrandt Bakker via ResearcherID

Neural network model to control an experimental chaotic pendulum

Physical Review E
1996 | Journal article
DOI:

10.1103/PhysRevE.54.3545
Contributors: Bakker, R.; Schouten, J. C.; Takens, F.; vandenBleek, C. M.
Source: Self-asserted source
Rembrandt Bakker via ResearcherID

Peer review (3 reviews for 2 publications/grants)

Review activity for Anatomy and embryology. (1)
Review activity for PLoS computational biology. (2)
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