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Employment (3)

Illumina (United States): San Diego, California, US

2022-04-04 to present
Employment
Source: Self-asserted source
Massimiliano Rossi

University of Florida: Gainesville, Florida, US

2020-03-02 to 2022-04-03 (Computer and Information Science and Engineering)
Employment
Source: Self-asserted source
Massimiliano Rossi

University of Helsinki: Helsinki, FI

2019-10-04 to 2019-12-31 (Computer Science)
Employment
Source: Self-asserted source
Massimiliano Rossi

Education and qualifications (2)

University of Verona: Verona, Veneto, IT

2016-10-01 to 2020-02-17 | PhD (Computer Science)
Education
Source: Self-asserted source
Massimiliano Rossi

University of Verona: Verona, Veneto, IT

2014-10-01 to 2016-10-19 | Master Degree (Computer Science)
Education
Source: Self-asserted source
Massimiliano Rossi

Works (28)

Comprehensive genome analysis and variant detection at scale using DRAGEN

Nature Biotechnology
2024-10-25 | Journal article
DOI: 10.1038/s41587-024-02382-1
Contributors: Sairam Behera; Severine Catreux; Massimiliano Rossi; Sean Truong; Zhuoyi Huang; Michael Ruehle; Arun Visvanath; Gavin Parnaby; Cooper Roddey; Vitor Onuchic et al.
Source: check_circle
Crossref

Comprehensive Analysis of the Genetic Variation in the LPA Gene from Short-Read Sequencing

BioMed
2024-06-04 | Journal article
DOI: 10.3390/biomed4020013
Contributors: Raphael O. Betschart; Georgios Koliopanos; Paras Garg; Linlin Guo; Massimiliano Rossi; Sebastian Schönherr; Stefan Blankenberg; Raphael Twerenbold; Tanja Zeller; Andreas Ziegler
Source: check_circle
Crossref
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Preferred source (of 2)‎

Comprehensive analysis of the genetic variation in theLPAgene from short-read sequencing

2024-03-22 | Preprint
DOI: 10.1101/2024.03.21.24304527
Contributors: Raphael O. Betschart; Georgios Koliopanos; Paras Garg; Linlin Guo; Massimiliano Rossi; Sebastian Schönherr; Stefan Blankenberg; Raphael Twerenbold; Tanja Zeller; Andreas Ziegler
Source: check_circle
Crossref

Comprehensive and accurate genome analysis at scale using DRAGEN accelerated algorithms

2024-01-02 | Preprint
DOI: 10.1101/2024.01.02.573821
Contributors: Sairam Behera; Severine Catreux; Massimiliano Rossi; Sean Truong; Zhuoyi Huang; Michael Ruehle; Arun Visvanath; Gavin Parnaby; Cooper Roddey; Vitor Onuchic et al.
Source: check_circle
Crossref

Data Structures for SMEM-Finding in the PBWT

2023 | Book chapter
DOI: 10.1007/978-3-031-43980-3_8
Contributors: Paola Bonizzoni; Christina Boucher; Davide Cozzi; Travis Gagie; Dominik Köppl; Massimiliano Rossi
Source: check_circle
Crossref

Identification of allele-specific KIV-2 repeats and impact on Lp(a) measurements for cardiovascular disease risk

2023-04-27 | Preprint | Author
DOI: 10.1101/2023.04.24.538128
Contributors: Sairam Behera; Jonathan Belyeu; Xiao Chen; Luis F Paulin; N.Q.H. Nguyen; E. Newman; medhat mahmoud; V. K. Menon; Q. Qi; P. Joshi et al.
Source: Self-asserted source
Massimiliano Rossi

μ-PBWT: Enabling the Storage and Use of UK Biobank Data on a Commodity Laptop

2023-02-16 | Preprint
DOI: 10.1101/2023.02.15.528658
Contributors: Davide Cozzi; Massimiliano Rossi; Simone Rubinacci; Dominik Köppl; Christina Boucher; Paola Bonizzoni
Source: check_circle
Crossref

Finding Overlapping Rmaps via Clustering

IEEE/ACM Transactions on Computational Biology and Bioinformatics
2022-11-01 | Journal article
DOI: 10.1109/TCBB.2021.3132534
Contributors: Kingshuk Mukherjee; Daniel Dole-Muinos; Massimiliano Rossi; Ayomide Ajayi; Mattia Prosperi; Christina Boucher
Source: check_circle
Crossref

Compressed Data Structures for Population-Scale Positional Burrows–Wheeler Transforms

2022-09-19 | Preprint
DOI: 10.1101/2022.09.16.508250
Contributors: Paola Bonizzoni; Christina Boucher; Davide Cozzi; Travis Gagie; Sana Kashgouli; Dominik Köppl; Massimiliano Rossi
Source: check_circle
Crossref

SPUMONI 2: Improved pangenome classification using a compressed index of minimizer digests

2022-09-11 | Preprint
DOI: 10.1101/2022.09.08.506805
Contributors: Omar Ahmed; Massimiliano Rossi; Travis Gagie; Christina Boucher; Ben Langmead
Source: check_circle
Crossref

Finding Maximal Exact Matches Using the r-Index

Journal of Computational Biology
2022-02-01 | Journal article
DOI: 10.1089/cmb.2021.0445
Contributors: Massimiliano Rossi; Marco Oliva; Paola Bonizzoni; Ben Langmead; Travis Gagie; Christina Boucher
Source: check_circle
Crossref

MONI: A Pangenomic Index for Finding Maximal Exact Matches

Journal of Computational Biology
2022-02-01 | Journal article
DOI: 10.1089/cmb.2021.0290
Contributors: Massimiliano Rossi; Marco Oliva; Ben Langmead; Travis Gagie; Christina Boucher
Source: check_circle
Crossref

Computing the Original eBWT Faster, Simpler, and with Less Memory

2021 | Book chapter
DOI: 10.1007/978-3-030-86692-1_11
Contributors: Christina Boucher; Davide Cenzato; Zsuzsanna Lipták; Massimiliano Rossi; Marinella Sciortino
Source: check_circle
Crossref

On the Redundancy of D-Ary Fano Codes

2021 | Book chapter
DOI: 10.1007/978-3-030-67731-2_19
Contributors: Ferdinando Cicalese; Massimiliano Rossi
Source: check_circle
Crossref

r-Indexing the eBWT

2021 | Book chapter
DOI: 10.1007/978-3-030-86692-1_1
Contributors: Christina Boucher; Davide Cenzato; Zsuzsanna Lipták; Massimiliano Rossi; Marinella Sciortino
Source: check_circle
Crossref

Finding Overlapping Rmaps via Gaussian Mixture Model Clustering

2021-07-18 | Other
DOI: 10.1101/2021.07.16.452722
Contributors: Kingshuk Mukherjee; Massimiliano Rossi; Daniel Dole-Muinos; Ayomide Ajayi; Mattia Prosperi; Christina Boucher
Source: check_circle
Crossref

MONI: A Pangenomics Index for Finding MEMs

2021-07-07 | Other
DOI: 10.1101/2021.07.06.451246
Contributors: Massimiliano Rossi; Marco Oliva; Ben Langmead; Travis Gagie; Christina Boucher
Source: check_circle
Crossref

Pan-genomic Matching Statistics for Targeted Nanopore Sequencing

iScience
2021-06 | Journal article
DOI: 10.1016/j.isci.2021.102696
Contributors: Omar Ahmed; Massimiliano Rossi; Sam Kovaka; Michael C. Schatz; Travis Gagie; Christina Boucher; Ben Langmead
Source: check_circle
Crossref

Pan-genomic Matching Statistics for Targeted Nanopore Sequencing

2021-03-23 | Preprint
DOI: 10.1101/2021.03.23.436610
Contributors: Omar Ahmed; Massimiliano Rossi; Sam Kovaka; Michael C. Schatz; Travis Gagie; Christina Boucher; Ben Langmead
Source: check_circle
Crossref

Tailoring r-index for Document Listing Towards Metagenomics Applications

2020 | Book chapter
DOI: 10.1007/978-3-030-59212-7_21
Contributors: Dustin Cobas; Veli Mäkinen; Massimiliano Rossi
Source: check_circle
Crossref

On the multi-interval Ulam-Rényi game: For 3 lies 4 intervals suffice

Theoretical Computer Science
2020-02 | Journal article
DOI: 10.1016/j.tcs.2019.12.028
Part of ISSN: 0304-3975
Source: Self-asserted source
Massimiliano Rossi

On Infinite Prefix Normal Words

SOFSEM 2019: Theory and Practice of Computer Science
2019 | Book chapter
DOI: 10.1007/978-3-030-10801-4_11
Part of ISBN: 9783030108007
Part of ISBN: 9783030108014
Part of ISSN: 0302-9743
Part of ISSN: 1611-3349
Source: Self-asserted source
Massimiliano Rossi

Greedy additive approximation algorithms for minimum-entropy coupling problem

2019 IEEE International Symposium on Information Theory (ISIT)
2019-07 | Conference paper
DOI: 10.1109/isit.2019.8849717
ISBN: 9781538692912
Source: Self-asserted source
Massimiliano Rossi

On Lempel-Ziv Decompression in Small Space

2019 Data Compression Conference (DCC)
2019-03 | Conference paper
DOI: 10.1109/dcc.2019.00030
ISBN: 9781728106571
Source: Self-asserted source
Massimiliano Rossi

Bubble-Flip—A New Generation Algorithm for Prefix Normal Words

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2018 | Book
DOI: 10.1007/978-3-319-77313-1_16
EID:

2-s2.0-85045342677
Contributors: Cicalese, F.; Lipták, Z.; Rossi, M.
Source: Self-asserted source
Massimiliano Rossi via Scopus - Elsevier

Bubble-Flip—A new generation algorithm for prefix normal words

Theoretical Computer Science
2018-09 | Journal article
DOI: 10.1016/j.tcs.2018.06.021
Part of ISSN: 0304-3975
Source: Self-asserted source
Massimiliano Rossi

On the multi-interval ulam-rényi game: For 3 lies 4 intervals suffice

CEUR Workshop Proceedings
2017 | Conference paper
EID:

2-s2.0-85031893314
Contributors: Cicalese, F.; Rossi, M.
Source: Self-asserted source
Massimiliano Rossi via Scopus - Elsevier

Embedded system for a Ballbot robot

2015 12th International Workshop on Intelligent Solutions in Embedded Systems, WISES 2015
2015 | Conference paper
EID:

2-s2.0-84962219395
Contributors: Bonci, A.; Pirani, M.; Rossi, M.; Gabbanini, E.M.
Source: Self-asserted source
Massimiliano Rossi via Scopus - Elsevier

Peer review (2 reviews for 2 publications/grants)

Review activity for Algorithmica. (1)
Review activity for BMC bioinformatics (1)
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