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Page 1 of 2

Human Pose Recognition via Occlusion-Preserving Abstract Images

2025 | Book chapter
DOI: 10.1007/978-3-031-73007-8_18
Contributors: Saad Manzur; Wayne Hayes
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New GO-based measures in multiple network alignment

Bioinformatics
2024-08-02 | Journal article
DOI: 10.1093/bioinformatics/btae476
Contributors: Kimia Yazdani; Reza Mousapour; Wayne B Hayes; Alfonso Valencia
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Exact p-values for global network alignments via combinatorial analysis of shared GO terms

Journal of Mathematical Biology
2024-05 | Journal article
DOI: 10.1007/s00285-024-02058-z
Contributors: Wayne B. Hayes
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A re-assessment of SpArcFiRe’s performance on toy spiral galaxies

Monthly Notices of the Royal Astronomical Society
2023-09-21 | Journal article
DOI: 10.1093/mnras/stad2810
Contributors: Matthew E Portman; Sahel Mesforoush; Wayne B Hayes
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On the current failure—but bright future—of topology-driven biological network alignment

Advances in protein chemistry and structural biology
2022 | Journal article
DOI: 10.1016/bs.apcsb.2022.05.005
SOURCE-WORK-ID:

3880306

PMID: 35871888
Part of ISSN: 1876-1623
WOSUID:

WOS:000873721000001
Contributors: Siyue Wang; Xiaoyin Chen; Brent J Frederisy; Benedict A Mbakogu; Amy D Kanne; Pasha Khosravi; Wayne B. Hayes
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University of California Publication Management System

Multi-SANA: Comparing Measures of Topological Similarity for Multiple Network Alignment

IEEE Transactions on Evolutionary Computation
2022-10 | Journal article
DOI: 10.1109/TEVC.2022.3153286
Contributors: Shiyue Rong; Weisheng Wang; Viet Ly; Pasha Khosravi; William C. Wu; Jing Chen; Wayne B. Hayes
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SANA: cross-species prediction of Gene Ontology GO annotations via topological network alignment

npj Systems Biology and Applications
2022-07-20 | Journal article
DOI: 10.1038/s41540-022-00232-x
Contributors: Siyue Wang; Giles R. S. Atkinson; Wayne B. Hayes
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No Cell Left behind: Automated, Stochastic, Physics-Based Tracking of Every Cell in a Dense, Growing Colony

Algorithms
2022-01-30 | Journal article
DOI: 10.3390/a15020051
Contributors: Huy Pham; Emile R. Shehada; Shawna Stahlheber; Kushagra Pandey; Wayne B. Hayes
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Common Neighbors Extension of the Sticky Model for PPI Networks Evaluated by Global and Local Graphlet Similarity

IEEE/ACM Transactions on Computational Biology and Bioinformatics
2021-01-01 | Journal article
DOI: 10.1109/TCBB.2020.3017374
Contributors: Sridevi Maharaj; Taotao Qian; Zarin Ohiba; Wayne Hayes
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Exactp-values for global network alignments via combinatorial analysis of shared GO terms

2020-10-09 | Preprint
DOI: 10.1101/2020.10.08.332254
Contributors: Wayne B. Hayes
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An Introductory Guide to Aligning Networks Using SANA, the Simulated Annealing Network Aligner

Methods in Molecular Biology
2020-01-01 | Journal article
DOI: 10.1007/978-1-4939-9873-9_18
SOURCE-WORK-ID:

2743283

PMID: 31583643
Part of ISSN: 1064-3745
WOSUID:

WOS:000558678200019
Contributors: Wayne B. Hayes
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University of California Publication Management System

Comparing Different Graphlet Measures for Evaluating Network Model Fits to BioGRID PPI Networks

2019 | Book chapter
DOI: 10.1007/978-3-030-18174-1_4
Contributors: Sridevi Maharaj; Zarin Ohiba; Wayne Hayes
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BLANT-fast graphlet sampling tool.

Computer applications in the biosciences : CABIOS
2019-12 | Journal article
DOI: 10.1093/bioinformatics/btz603
SOURCE-WORK-ID:

2697999

PMID: 31373347
Part of ISSN: 1367-4803
WOSUID:

WOS:000509361200053
Contributors: Sridevi Maharaj; Brennan Tracy; Wayne B. Hayes
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University of California Publication Management System

BioFabric Visualization of Network Alignments

2019-12-19 | Preprint
DOI: 10.1101/2019.12.18.881664
Contributors: Rishi M. Desai; William J.R. Longabaugh; Wayne B. Hayes
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SANA NetGO: a combinatorial approach to using Gene Ontology (GO) terms to score network alignments

Bioinformatics
2018-04-15 | Journal article
DOI: 10.1093/bioinformatics/btx716
SOURCE-WORK-ID:

2245700

PMID: 29228175
Part of ISSN: 1367-4803
WOSUID:

WOS:000430175000011
Contributors: Wayne B. Hayes; Nil Mamano
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University of California Publication Management System

A JavaScript API for the Ice Sheet System Model (ISSM) 4.11: towards an online interactive model for the cryosphere community

Geoscientific Model Development
2017-12-04 | Journal article
DOI: 10.5194/gmd-10-4393-2017
SOURCE-WORK-ID:

2249578

Part of ISSN: 1991-959X
WOSUID:

WOS:000416928800001
Contributors: Eric Larour; Daniel Cheng; Gilberto Perez; Justin Quinn; Mathieu Morlighem; Bao Duong; Lan Nguyen; Kit Petrie; Silva Harounian; Daria Halkides et al.
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University of California Publication Management System

Galaxy Zoo and sparcfire: constraints on spiral arm formation mechanisms from spiral arm number and pitch angles

Monthly Notices of the Royal Astronomical Society
2017-12-01 | Journal article
DOI: 10.1093/mnras/stx2137
SOURCE-WORK-ID:

2233813

Part of ISSN: 0035-8711
WOSUID:

WOS:000413082900075
Contributors: Ross E Hart; Steven P Bamford; Wayne B. Hayes; Carolin N Cardamone; William C Keel; Sandor J Kruk; Chris J Lintott; Karen L Masters; Brooke D Simmons; Rebecca J Smethurst
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University of California Publication Management System

SANA: simulated annealing far outperforms many other search algorithms for biological network alignment.

Bioinformatics
2017-07-15 | Journal article
DOI: 10.1093/bioinformatics/btx090
SOURCE-WORK-ID:

1814131

PMID: 28203713
Part of ISSN: 1367-4803
WOSUID:

WOS:000405289100059
Contributors: Nil Mamano; Wayne B. Hayes
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University of California Publication Management System

On the nature and correction of the spurious S-wise spiral galaxy winding bias in Galaxy Zoo 1

Monthly Notices of the Royal Astronomical Society
2017-05-01 | Journal article
DOI: 10.1093/mnras/stw3290
SOURCE-WORK-ID:

2157942

Part of ISSN: 0035-8711
WOSUID:

WOS:000402849400010
Contributors: Wayne B. Hayes; Darren Davis; Pedro Silva
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University of California Publication Management System

Graphettes: Constant-time determination of graphlet and orbit identity including (possibly disconnected) graphlets up to size 8

PLoS ONE
2017-01-01 | Journal article
DOI: 10.1371/journal.pone.0181570
SOURCE-WORK-ID:

2617281

PMC: PMC5568234
PMID: 28832661
Part of ISSN: 1932-6203
WOSUID:

WOS:000408355800006
Contributors: Adib Hasan; Po-Chien Chung; Wayne B. Hayes
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University of California Publication Management System

A JavaScript API for the Ice Sheet System Model: towards on online interactive model for the Cryosphere Community

2016-08-25 | Journal article
DOI: 10.5194/gmd-2016-179
SOURCE-WORK-ID:

2760216
Contributors: Eric Larour; Daniel Cheng; Gilberto Perez; Justin Quinn; Mathieu Morlighem; Bao Duong; Lan Nguyen; Kit Petrie; Silva Harounian; Daria Halkides et al.
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University of California Publication Management System

SpArcFiRe: SCALABLE AUTOMATED DETECTION OF SPIRAL GALAXY ARM SEGMENTS

The Astrophysical Journal (ApJ)
2014-08-01 | Journal article
DOI: 10.1088/0004-637x/790/2/87
SOURCE-WORK-ID:

685461

Part of ISSN: 0004-637X
WOSUID:

WOS:000339115800004
Contributors: Darren R Davis; Wayne B. Hayes
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University of California Publication Management System

A BMP-FGF Morphogen Toggle Switch Drives the Ultrasensitive Expression of Multiple Genes in the Developing Forebrain

PLoS Computational Biology
2014-01-01 | Journal article
DOI: 10.1371/journal.pcbi.1003463
SOURCE-WORK-ID:

362458

PMC: PMC3923663
PMID: 24550718
Part of ISSN: 1553-734X
WOSUID:

WOS:000332016700002
Contributors: Shyam Srinivasan; Jia Sheng Hu; D Spencer Currle; Ernest S Fung; Wayne B. Hayes; Arthur Lander; Edwin Monuki
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University of California Publication Management System

Graphlet-based measures are suitable for biological network comparison.

Bioinformatics
2013-02-15 | Journal article
DOI: 10.1093/bioinformatics/bts729
SOURCE-WORK-ID:

865496

PMID: 23349212
Part of ISSN: 1367-4811
WOSUID:

WOS:000315158500010
Contributors: Wayne B. Hayes; Kai Sun; Nataša Pržulj
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University of California Publication Management System

Automated Quantitative Description of Spiral Galaxy Arm-Segment Structure

Proceedings / CVPR, IEEE Computer Society Conference on Computer Vision and Pattern Recognition. IEEE Computer Society Conference on Computer Vision and Pattern Recognition
2012-06-01 | Conference paper
DOI: 10.1109/cvpr.2012.6247794
SOURCE-WORK-ID:

591675

Part of ISSN: 1063-6919
WOSUID:

WOS:000309166201037
Contributors: Darren R Davis; Wayne B. Hayes
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University of California Publication Management System

GraphCrunch 2: Software tool for network modeling, alignment and clustering

BMC Bioinformatics
2011-12-01 | Journal article
DOI: 10.1186/1471-2105-12-24
SOURCE-WORK-ID:

865488

PMC: PMC3036622
PMID: 21244715
Part of ISSN: 1471-2105
WOSUID:

WOS:000287161200001
Contributors: Oleksii Kuchaiev; Aleksandar Stevanović; Wayne B. Hayes; Nataša Pržulj
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University of California Publication Management System

Tinkerbell Is Chaotic

SIAM Journal on Applied Dynamical Systems
2011-01 | Journal article
DOI: 10.1137/100819011
SOURCE-WORK-ID:

608991

Part of ISSN: 1536-0040
WOSUID:

WOS:000298377000009
Contributors: Alexandre Goldsztejn; Wayne B. Hayes; Pieter Collins
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University of California Publication Management System

Algorithm 908

ACM Transactions on Mathematical Software
2010-09 | Journal article
DOI: 10.1145/1824801.1824815
SOURCE-WORK-ID:

591676

Part of ISSN: 0098-3500
WOSUID:

WOS:000282761200014
Contributors: Yong-Kang Zhu; Wayne B. Hayes
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University of California Publication Management System

The interplay of chaos between the terrestrial and giant planets

Monthly Notices of the Royal Astronomical Society
2010-09-21 | Journal article
DOI: 10.1111/j.1365-2966.2010.17027.x
SOURCE-WORK-ID:

591672

Part of ISSN: 0035-8711
WOSUID:

WOS:000281797900035
Contributors: Wayne B. Hayes; Anton V Malykh; Christopher M Danforth
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University of California Publication Management System

Topological network alignment uncovers biological function and phylogeny

Journal of the Royal Society Interface
2010-09-06 | Journal article
DOI: 10.1098/rsif.2010.0063
SOURCE-WORK-ID:

882897

PMC: PMC2894889
PMID: 20236959
Part of ISSN: 1742-5689
WOSUID:

WOS:000280332700009
Contributors: Oleksii Kuchaiev; Tijana Milenković; Vesna Memišević; Wayne B. Hayes; Nataša Pržulj
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University of California Publication Management System

Optimal Network Alignment with Graphlet Degree Vectors

Cancer Informatics
2010-01 | Journal article
DOI: 10.4137/cin.s4744
SOURCE-WORK-ID:

873761

PMID: 20628593
PMC: PMC2901631
Part of ISSN: 1176-9351
WOSUID:

WOS:000210882100014
Contributors: Tijana Milenković; Weng Leong Ng; Wayne B. Hayes; NatašA PržUlj
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University of California Publication Management System

Geometric evolutionary dynamics of protein interaction networks.

Pacific Symposium on Biocomputing
2009-10 | Conference paper
DOI: 10.1142/9789814295291_0020
SOURCE-WORK-ID:

865195

PMID: 19908370
Part of ISSN: 2335-6936
WOSUID:

WOS:000411479100019
Contributors: Natasa Przulj; Oleksii Kuchaiev; Aleksandar Stevanović; Wayne B. Hayes
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University of California Publication Management System

GR-02 A cross-inhibitory positive feedback mechanism establishes a robust sharp border in the forebrain

Cells and Development
2009-08 | Conference paper
DOI: 10.1016/j.mod.2009.06.942
SOURCE-WORK-ID:

2548020

Part of ISSN: 2667-2901
WOSUID:

WOS:000270034900121
Contributors: Shyam Srinivasan; David Currle; Jia Hu; Wayne B. Hayes; Arthur Lander; Edwin Monuki
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University of California Publication Management System

Correct Rounding and a Hybrid Approach to Exact Floating-Point Summation

SIAM Journal on Scientific Computing
2009-01 | Journal article
DOI: 10.1137/070710020
SOURCE-WORK-ID:

591673

Part of ISSN: 1064-8275
WOSUID:

WOS:000268859500026
Contributors: Yong-Kang Zhu; Wayne B. Hayes
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University of California Publication Management System

Surfing on the edge: chaos versus near-integrability in the system of Jovian planets

Monthly Notices of the Royal Astronomical Society
2008-05-01 | Journal article
DOI: 10.1111/j.1365-2966.2008.13024.x
SOURCE-WORK-ID:

251918

Part of ISSN: 0035-8711
WOSUID:

WOS:000255142500045
Contributors: Wayne B. Hayes
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Improving Phrap-Based Assembly of the Rat Using “Reliable” Overlaps

PLoS ONE
2008-01-01 | Journal article
DOI: 10.1371/journal.pone.0001836
SOURCE-WORK-ID:

867257

PMID: 18350171
PMC: PMC2266800
Part of ISSN: 1932-6203
WOSUID:

WOS:000260762300037
Contributors: Michael Roberts; Aleksey V Zimin; Wayne Hayes; Brian R Hunt; Cevat Ustun; James R White; Paul Havlak; James Yorke
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University of California Publication Management System

Is the outer Solar System chaotic?

Nature Physics
2007-10 | Journal article
DOI: 10.1038/nphys728
SOURCE-WORK-ID:

251917

Part of ISSN: 1745-2473
WOSUID:

WOS:000249933900013
Contributors: Wayne B. Hayes
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University of California Publication Management System

Robust and reliable defect control for Runge-Kutta methods

ACM Transactions on Mathematical Software
2007-03 | Journal article
DOI: 10.1145/1206040.1206041
SOURCE-WORK-ID:

591671

Part of ISSN: 0098-3500
WOSUID:

WOS:000245796100001
Contributors: W H Enright; Wayne B. Hayes
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University of California Publication Management System

A Fast Shadowing Algorithm for High-Dimensional ODE Systems

SIAM Journal on Scientific Computing
2007-01 | Journal article
DOI: 10.1137/060654840
SOURCE-WORK-ID:

591677

Part of ISSN: 1064-8275
WOSUID:

WOS:000250005600020
Contributors: Wayne B. Hayes; Kenneth R Jackson
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University of California Publication Management System

Rigorous high-dimensional shadowing using containment: The general case

Discrete and Continuous Dynamical Systems. Series A
2006 | Conference paper
DOI: 10.3934/dcds.2006.14.329
SOURCE-WORK-ID:

591674

Part of ISSN: 1078-0947
WOSUID:

WOS:000232550000006
Contributors: Wayne B. Hayes; Kenneth R Jackson; Carmen Young
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University of California Publication Management System

Rigorous Inner Approximation of the Range of Functions

2006-09-01 | Conference paper
DOI: 10.1109/scan.2006.38
SOURCE-WORK-ID:

878593
Contributors: Alexandre Goldsztejn; Wayne B. Hayes
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University of California Publication Management System

Fast, Guaranteed-accurate Sums of Many Floating-Point Numbers

Proceedings of RNC7
2006-01-01 | Conference paper
SOURCE-WORK-ID:

863897
Contributors: Wayne B. Hayes; Y Zhu; G Hanrot; P Zimmermann
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A survey of shadowing methods for numerical solutions of ordinary differential equations

Applied Numerical Mathematics
2005-05 | Journal article
DOI: 10.1016/j.apnum.2004.08.011
SOURCE-WORK-ID:

881892

Part of ISSN: 0168-9274
WOSUID:

WOS:000228109400014
Contributors: Wayne Hayes; Kenneth R Jackson
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University of California Publication Management System

Reducing storage requirements for biological sequence comparison

Bioinformatics
2004-12-12 | Journal article
DOI: 10.1093/bioinformatics/bth408
SOURCE-WORK-ID:

877698

PMID: 15256412
Part of ISSN: 1367-4803
WOSUID:

WOS:000225786600009
Contributors: Michael Roberts; Wayne B. Hayes; Brian R Hunt; Stephen M Mount; James A Yorke
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University of California Publication Management System

Computer simulations, exact trajectories, and the gravitational N-body problem

American Journal of Physics
2004-09-01 | Journal article
DOI: 10.1119/1.1764561
SOURCE-WORK-ID:

858034

Part of ISSN: 0002-9505
WOSUID:

WOS:000223478700020
Contributors: Wayne Hayes
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University of California Publication Management System

Shadowing-based Reliability Decay in Softened n-Body Simulations

The Astrophysical Journal (ApJ)
2003-04-20 | Journal article
DOI: 10.1086/375263
SOURCE-WORK-ID:

879828

Part of ISSN: 0004-637X
WOSUID:

WOS:000182159600002
Contributors: Wayne B. Hayes
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University of California Publication Management System

Shadowing High-Dimensional Hamiltonian Systems: The Gravitational N-body Problem

Physical Review Letters
2003-02-07 | Journal article
DOI: 10.1103/physrevlett.90.054104
SOURCE-WORK-ID:

879827

PMID: 12633361
Part of ISSN: 0031-9007
WOSUID:

WOS:000180918300021
Contributors: Wayne B. Hayes
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University of California Publication Management System

Rigorous Shadowing of Numerical Solutions of Ordinary Differential Equations by Containment

SIAM Journal on Numerical Analysis
2003-01 | Journal article
DOI: 10.1137/s0036142901399100
SOURCE-WORK-ID:

878596

Part of ISSN: 0036-1429
WOSUID:

WOS:000187148700015
Contributors: Wayne B. Hayes; Kenneth R Jackson
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University of California Publication Management System

Fitting Selected Random Planetary Systems to Titius–Bode Laws

Icarus
1998-10 | Journal article
DOI: 10.1006/icar.1998.5999
SOURCE-WORK-ID:

864296

Part of ISSN: 0019-1035
WOSUID:

WOS:000076990700015
Contributors: Wayne Hayes; Scott Tremaine
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University of California Publication Management System

Global error measures for the large gravitatonal N-body problem

Proceedings of the 12th “Kingston” Meeting on Theoretical Astrophysics: Computational Astrophysics
1996-10-01 | Conference paper
SOURCE-WORK-ID:

865322
Contributors: Wayne B. Hayes; W Hayes; K R Jackson; M J West; D A Clarke; E Halifax; N Scotia
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Peer review (8 reviews for 6 publications/grants)

Review activity for Applied mathematics and computation. (1)
Review activity for Artificial intelligence review. (1)
Review activity for Astrophysics and space science. (1)
Review activity for BMC biology. (2)
Review activity for Brain sciences. (1)
Review activity for PloS one. (2)
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