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Scopus Author ID: 57219517921
Researcher Name Resolver ID: 1000090838624

Keywords

bioinformatics, biostatistics, plant science, agronomics, machine learning

Activities

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Employment (2)

National Agriculture and Food Research Organization: Shimbashi, Tokyo, JP

2018-10-01 to present | Senior scientist (Research Center for Agricultural Information Technology)
Employment
Source: Self-asserted source
Jianqiang Sun

National Institute of Advanced Industrial Science and Technology: Tokyo, JP

2017-04-01 to 2018-09-30 | Postdoctoral researcher (Artificial Intelligence Research Center)
Employment
Source: Self-asserted source
Jianqiang Sun

Education and qualifications (3)

The University of Tokyo: Bunkyo-ku, Tokyo, JP

2014-04-01 to 2017-03-31 (Department of Biotechnology)
Education
Source: Self-asserted source
Jianqiang Sun

The University of Tokyo: Bunkyo-ku, Tokyo, JP

2012-04-01 to 2014-03-31 | MD (Department of Biotechnology)
Education
Source: Self-asserted source
Jianqiang Sun

The University of Tokyo: Bunkyo-ku, Tokyo, JP

2008-04-01 to 2012-03-31 (Faculty of Agriculture)
Education
Source: Self-asserted source
Jianqiang Sun

Works (20)

Mitigating excessive heat in Arabica coffee using nanosilicon and seaweed extract to enhance element homeostasis and photosynthetic recovery

BMC Plant Biology
2024-11-12 | Journal article
DOI: 10.1186/s12870-024-05784-0
Part of ISSN: 1471-2229
Contributors: Ekkachak Chandon; Patchawee Nualkhao; Metee Vibulkeaw; Rujira Tisarum; Thapanee Samphumphuang; Jianqiang Sun; Suriyan Cha-um; Suravoot Yooyongwech
Source: Self-asserted source
Jianqiang Sun

Addressing domain shift in deep learning: Challenges and insights from plant disease diagnosis and flower recognition

2024-10-11 | Preprint
DOI: 10.1101/2024.10.07.617111
Contributors: Jianqiang Sun
Source: check_circle
Crossref

Predicting symptom severity in PSTVd‐infected tomato plants using the PSTVd genome sequence

Molecular Plant Pathology
2024-07 | Journal article
DOI: 10.1111/mpp.13469
Contributors: Jianqiang Sun; Yosuke Matsushita
Source: check_circle
Crossref

Few‐shot learning for plant disease recognition: A review

Agronomy Journal
2024-05 | Journal article
DOI: 10.1002/agj2.21285
Contributors: Jianqiang Sun; Wei Cao; Xi Fu; Sunao Ochi; Takehiko Yamanaka
Source: check_circle
Crossref

CircSeqAlignTk: An R package for end-to-end analysis of RNA-seq data for circular genomes

F1000Research
2024-04-30 | Journal article
DOI: 10.12688/f1000research.127348.2
Contributors: Jianqiang Sun; Xi Fu; Wei Cao
Source: check_circle
Crossref

Seasonal pigment fluctuation in diploid and polyploid Arabidopsis revealed by machine learning-based phenotyping method PlantServation

Nature Communications
2023-09-22 | Journal article
DOI: 10.1038/s41467-023-41260-3
Contributors: Reiko Akiyama; Takao Goto; Toshiaki Tameshige; Jiro Sugisaka; Ken Kuroki; Jianqiang Sun; Junichi Akita; Masaomi Hatakeyama; Hiroshi Kudoh; Tanaka Kenta et al.
Source: check_circle
Crossref

A low-coverage 3′ RNA-seq to detect homeolog expression in polyploid wheat

NAR Genomics and Bioinformatics
2023-07-05 | Journal article
DOI: 10.1093/nargab/lqad067
Contributors: Jianqiang Sun; Moeko Okada; Toshiaki Tameshige; Rie Shimizu-Inatsugi; Reiko Akiyama; Atsushi J Nagano; Jun Sese; Kentaro K Shimizu
Source: check_circle
Crossref

Characteristic features of statistical models and machine learning methods derived from pest and disease monitoring datasets

Royal Society Open Science
2023-06 | Journal article
DOI: 10.1098/rsos.230079
Contributors: Shigeki Kishi; Jianqiang Sun; Akira Kawaguchi; Sunao Ochi; Megumi Yoshida; Takehiko Yamanaka
Source: check_circle
Crossref

PlantServation: time-series phenotyping using machine learning revealed seasonal pigment fluctuation in diploid and polyploidArabidopsis

2022-11-24 | Preprint
DOI: 10.1101/2022.11.21.517294
Contributors: Reiko Akiyama; Takao Goto; Toshiaki Tameshige; Jiro Sugisaka; Ken Kuroki; Jianqiang Sun; Junichi Akita; Masaomi Hatakeyama; Hiroshi Kudoh; Tanaka Kenta et al.
Source: check_circle
Crossref

CircSeqAlignTk: An R package for end-to-end analysis of RNA-seq data for circular genomes [version 1; peer review: 1 approved, 2 approved with reservations]

2022-10-27 | Journal article
DOI: 10.12688/f1000research.127348.1
Part of ISSN: 2046-1402
Funded by GRANT_NUMBER: 21K05608, 22H05179
Contributors: Jianqiang Sun; Xi Fu; Wei Cao; Cao Wei; Fu Xi; Sun Jianqiang; Sun Jianqiang; Sun Jianqiang; Sun Jianqiang; Sun Jianqiang et al.
Source: check_circle
F1000
grade
Preferred source (of 2)‎

JustDeepIt: Software tool with graphical and character user interfaces for deep learning-based object detection and segmentation in image analysis

Frontiers in Plant Science
2022-10-06 | Journal article
DOI: 10.3389/fpls.2022.964058
Part of ISSN: 1664-462X
Contributors: Jianqiang Sun; Wei Cao; Takehiko Yamanaka
Source: Self-asserted source
Jianqiang Sun via Crossref Metadata Search

Improving the Accuracy of Species Identification by Combining Deep Learning With Field Occurrence Records

Frontiers in Ecology and Evolution
2021 | Journal article
DOI: 10.3389/fevo.2021.762173
Part of ISSN: 2296-701X
Contributors: Jianqiang Sun; Ryo Futahashi; Takehiko Yamanaka
Source: Self-asserted source
Jianqiang Sun via Crossref Metadata Search

Corrigendum

New Phytologist
2021-07 | Journal article
DOI: 10.1111/nph.17320
Contributors: Reiko Akiyama; Roman V. Briskine; Xiangchao Gan; Masaomi Hatakeyama; Hiroshi Kudoh; Heidi E. L. Lischer; Jun Sese; Kentaro K. Shimizu; Rie Shimizu‐Inatsugi; Jianqiang Sun
Source: check_circle
Crossref

Fine-scale empirical data on niche divergence and homeolog expression patterns in an allopolyploid and its diploid progenitor species.

The New phytologist
2020-11 | Journal article
DOI: 10.1111/nph.17101
PMID: 33222195
Contributors: Akiyama R; Sun J; Hatakeyama M; Lischer HEL; Briskine RV; Hay A; Gan X; Tsiantis M; Kudoh H; Kanaoka MM et al.
Source: Self-asserted source
Jianqiang Sun via Europe PubMed Central
grade
Preferred source (of 2)‎

A Recently Formed Triploid <i>Cardamine insueta</i> Inherits Leaf Vivipary and Submergence Tolerance Traits of Parents.

Frontiers in genetics
2020-10 | Journal article
DOI: 10.3389/fgene.2020.567262
PMID: 33133153
PMC: PMC7573311
Contributors: Sun J; Shimizu-Inatsugi R; Hofhuis H; Shimizu K; Hay A; Shimizu KK; Sese J
Source: Self-asserted source
Jianqiang Sun via Europe PubMed Central

TCC-GUI: a Shiny-based application for differential expression analysis of RNA-Seq count data

BMC Research Notes
2019-03 | Journal article
DOI: 10.1186/s13104-019-4179-2
Part of ISSN: 1756-0500
Contributors: Wei Su; Jianqiang Sun; Kentaro Shimizu; Koji Kadota
Source: Self-asserted source
Jianqiang Sun via Crossref Metadata Search

Silhouette Scores for Arbitrary Defined Groups in Gene Expression Data and Insights into Differential Expression Results

Biological Procedures Online
2018-03-01 | Journal article
DOI: 10.1186/s12575-018-0067-8
Part of ISSN: 1480-9222
Contributors: Shitao Zhao; Jianqiang Sun; Kentaro Shimizu; Koji Kadota
Source: Self-asserted source
Jianqiang Sun via Crossref Metadata Search

High-Throughput Sequencing of the Expressed Torafugu (Takifugu rubripes) Antibody Sequences Distinguishes IgM and IgT Repertoires and Reveals Evidence of Convergent Evolution

Frontiers in Immunology
2018-02 | Journal article
DOI: 10.3389/fimmu.2018.00251
Part of ISSN: 1664-3224
Contributors: Xi Fu; Jianqiang Sun; Engkong Tan; Kentaro Shimizu; Md Shaheed Reza; Shugo Watabe; Shuichi Asakawa
Source: Self-asserted source
Jianqiang Sun via Crossref Metadata Search

Evaluation of methods for differential expression analysis on multi-group RNA-seq count data

Bmc Bioinformatics
2015 | Journal article
DOI: 10.1186/s12859-015-0794-7
WOSUID:

WOS:000364189300001
Contributors: Tang, Min; Sun, Jianqiang; Shimizu, Kentaro; Kadota, Koji
Source: Self-asserted source
Jianqiang Sun via ResearcherID
grade
Preferred source (of 2)‎

TCC: an R package for comparing tag count data with robust normalization strategies

Bmc Bioinformatics
2013 | Journal article
DOI:

10.1186/1471-2105-14-219

Part of ISSN:

1471-2105
Contributors: Sun, Jianqiang; Nishiyama, Tomoaki; Shimizu, Kentaro; Kadota, Koji
Source: Self-asserted source
Jianqiang Sun via ResearcherID
grade
Preferred source (of 2)‎
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