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Scopus Author ID: 6507283282

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Employment (1)

Lawrence Berkeley National Laboratory: CA, CA, US

2018-10-01 to present | Secondary Metabolites Science Program (Joint Genome Institute)
Employment
Source: Self-asserted source
Daniel Udwary

Works (26)

Microbial secondary metabolites: advancements to accelerate discovery towards application

Nature Reviews Microbiology
2025-01-17 | Journal article
DOI: 10.1038/s41579-024-01141-y
Contributors: Jaime Lorenzo N. Dinglasan; Hiroshi Otani; Drew T. Doering; Daniel Udwary; Nigel J. Mouncey
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The secondary metabolism collaboratory: a database and web discussion portal for secondary metabolite biosynthetic gene clusters

Nucleic Acids Research
2025-01-06 | Journal article
DOI: 10.1093/nar/gkae1060
Contributors: Daniel W Udwary; Drew T Doering; Bryce Foster; Tatyana Smirnova; Satria A Kautsar; Nigel J Mouncey
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MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters

Nucleic Acids Research
2023 | Journal article
DOI: 10.1093/nar/gkac1049
EID:

2-s2.0-85146851279

Part of ISSN: 13624962 03051048
Contributors: Terlouw, B.R.; Blin, K.; Navarro-Muñoz, J.C.; Avalon, N.E.; Chevrette, M.G.; Egbert, S.; Lee, S.; Meijer, D.; Recchia, M.J.J.; Reitz, Z.L. et al.
Source: Self-asserted source
Daniel Udwary via Scopus - Elsevier

A centimeter-long bacterium with DNA compartmentalized in membrane-bound organelles

bioRxiv
2022 | Other
DOI: 10.1101/2022.02.16.480423
EID:

2-s2.0-85127417752

Part of ISSN: 26928205
Contributors: Volland, J.-M.; Gonzalez-Rizzo, S.; Gros, O.; Tyml, T.; Ivanova, N.; Schulz, F.; Goudeau, D.; Elisabeth, N.H.; Nath, N.; Udwary, D. et al.
Source: Self-asserted source
Daniel Udwary via Scopus - Elsevier

Comparative and pangenomic analysis of the genus Streptomyces

Scientific Reports
2022 | Journal article
DOI: 10.1038/s41598-022-21731-1
EID:

2-s2.0-85141411377

Part of ISSN: 20452322
Contributors: Otani, H.; Udwary, D.W.; Mouncey, N.J.
Source: Self-asserted source
Daniel Udwary via Scopus - Elsevier

Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes

Cell Genomics
2022 | Journal article
DOI: 10.1016/j.xgen.2022.100213
EID:

2-s2.0-85143851983

Part of ISSN: 2666979X
Contributors: Seshadri, R.; Roux, S.; Huber, K.J.; Wu, D.; Yu, S.; Udwary, D.; Call, L.; Nayfach, S.; Hahnke, R.L.; Pukall, R. et al.
Source: Self-asserted source
Daniel Udwary via Scopus - Elsevier

A centimeter-long bacterium with DNA contained in metabolically active, membrane-bound organelles

Science
2022-06-24 | Journal article
DOI: 10.1126/science.abb3634
Contributors: Jean-Marie Volland; Silvina Gonzalez-Rizzo; Olivier Gros; Tomáš Tyml; Natalia Ivanova; Frederik Schulz; Danielle Goudeau; Nathalie H. Elisabeth; Nandita Nath; Daniel Udwary et al.
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New keys to unlock the treasure trove of microbial natural products

Nature Reviews Microbiology
2021-11-03 | Journal article
DOI: 10.1038/s41579-021-00631-7
Contributors: Daniel W. Udwary; Hiroshi Otani; Nigel J. Mouncey
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A genomic catalog of Earth’s microbiomes

Nature Biotechnology
2021-04 | Journal article
DOI: 10.1038/s41587-020-0718-6
Contributors: Stephen Nayfach; Simon Roux; Rekha Seshadri; Daniel Udwary; Neha Varghese; Frederik Schulz; Dongying Wu; David Paez-Espino; I-Min Chen; Marcel Huntemann et al.
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Author Correction: A genomic catalog of Earth’s microbiomes

Nature Biotechnology
2021-04 | Journal article
DOI: 10.1038/s41587-021-00898-4
Contributors: Stephen Nayfach; Simon Roux; Rekha Seshadri; Daniel Udwary; Neha Varghese; Frederik Schulz; Dongying Wu; David Paez-Espino; I-Min Chen; Marcel Huntemann et al.
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Publisher Correction: A genomic catalog of Earth’s microbiomes

Nature Biotechnology
2021-04 | Journal article
DOI: 10.1038/s41587-020-00769-4
Contributors: Stephen Nayfach; Simon Roux; Rekha Seshadri; Daniel Udwary; Neha Varghese; Frederik Schulz; Dongying Wu; David Paez-Espino; I-Min Chen; Marcel Huntemann et al.
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Genomic discovery of an evolutionarily programmed modality for small-molecule targeting of an intractable protein surface

Proceedings of the National Academy of Sciences
2020-07-21 | Journal article
DOI: 10.1073/pnas.2006560117
Contributors: Uddhav K. Shigdel; Seung-Joo Lee; Mathew E. Sowa; Brian R. Bowman; Keith Robison; Minyun Zhou; Khian Hong Pua; Dylan T. Stiles; Joshua A. V. Blodgett; Daniel W. Udwary et al.
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MAGI: A Method for Metabolite Annotation and Gene Integration

ACS Chemical Biology
2019 | Journal article
DOI: 10.1021/acschembio.8b01107
EID:

2-s2.0-85064352568

Part of ISSN: 15548937 15548929
Contributors: Erbilgin, O.; Rübel, O.; Louie, K.B.; Trinh, M.; Raad, M.D.; Wildish, T.; Udwary, D.; Hoover, C.; Deutsch, S.; Northen, T.R. et al.
Source: Self-asserted source
Daniel Udwary via Scopus - Elsevier

New voyages to explore the natural product galaxy

Journal of Industrial Microbiology and Biotechnology
2019 | Journal article
DOI: 10.1007/s10295-018-02122-w
EID:

2-s2.0-85059530863

Part of ISSN: 14765535 13675435
Contributors: Mouncey, N.J.; Otani, H.; Udwary, D.; Yoshikuni, Y.
Source: Self-asserted source
Daniel Udwary via Scopus - Elsevier

MAGI: A method for metabolite, annotation, and gene integration

bioRxiv
2017 | Other
DOI: 10.1101/204362
EID:

2-s2.0-85094283324

Part of ISSN: 26928205
Contributors: Erbilgin, O.; Rübel, O.; Louie, K.B.; Trinh, M.; de Raad, M.; Wildish, T.; Udwary, D.W.; Hoover, C.A.; Deutsch, S.; Northen, T.R. et al.
Source: Self-asserted source
Daniel Udwary via Scopus - Elsevier

Community annotation and bioinformatics workforce development in concert-Little Skate Genome Annotation Workshops and Jamborees

Database
2012 | Journal article
DOI: 10.1093/database/bar064
EID:

2-s2.0-84862240827

Part of ISSN: 17580463
Contributors: Wang, Q.; Arighi, C.N.; King, B.L.; Polson, S.W.; Vincent, J.; Chen, C.; Huang, H.; Kingham, B.F.; Page, S.T.; Rendino, M.F. et al.
Source: Self-asserted source
Daniel Udwary via Scopus - Elsevier

Significant natural product biosynthetic potential of actinorhizal symbionts of the genus Frankia, as revealed by comparative genomic and proteomic analyses

Applied and Environmental Microbiology
2011 | Journal article
DOI: 10.1128/AEM.00038-11
EID:

2-s2.0-79958290073

Part of ISSN: 00992240 10985336
Contributors: Udwary, D.W.; Gontang, E.A.; Jones, A.C.; Jones, C.S.; Schultz, A.W.; Winter, J.M.; Yang, J.Y.; Beauchemin, N.; Capson, T.L.; Clark, B.R. et al.
Source: Self-asserted source
Daniel Udwary via Scopus - Elsevier

Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria

ISME Journal
2009 | Journal article
DOI: 10.1038/ismej.2009.58
EID:

2-s2.0-70349464475

Part of ISSN: 17517362 17517370
Contributors: Penn, K.; Jenkins, C.; Nett, M.; Udwary, D.W.; Gontang, E.A.; McGlinchey, R.P.; Foster, B.; Lapidus, A.; Podell, S.; Allen, E.E. et al.
Source: Self-asserted source
Daniel Udwary via Scopus - Elsevier

Acyl-carrier protein-phosphopantetheinyltransferase partnerships in fungal fatty acid synthases

ChemBioChem
2008 | Journal article
DOI: 10.1002/cbic.200700659
EID:

2-s2.0-48649095210

Part of ISSN: 14394227 14397633
Contributors: Crawford, J.M.; Vagstad, A.L.; Ehrlich, K.C.; Udwary, D.W.; Townsend, C.A.
Source: Self-asserted source
Daniel Udwary via Scopus - Elsevier

Biosynthesis and structures of cyclomarins and cyclomarazines, prenylated cyclic peptides of marine actinobacterial origin

Journal of the American Chemical Society
2008 | Journal article
DOI: 10.1021/ja711188x
EID:

2-s2.0-41549168666

Part of ISSN: 00027863
Contributors: Schultz, A.W.; Oh, D.-C.; Carney, J.R.; Williamson, R.T.; Udwary, D.W.; Jensen, P.R.; Gould, S.J.; Fenical, W.; Moore, B.S.
Source: Self-asserted source
Daniel Udwary via Scopus - Elsevier

Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica

Proceedings of the National Academy of Sciences of the United States of America
2007 | Journal article
DOI: 10.1073/pnas.0700962104
EID:

2-s2.0-34447302758

Part of ISSN: 00278424
Contributors: Udwary, D.W.; Zeigler, L.; Asolkar, R.N.; Singan, V.; Lapidus, A.; Fenical, W.; Jensen, P.R.; Moore, B.S.
Source: Self-asserted source
Daniel Udwary via Scopus - Elsevier

Identification of a starter unit acyl-carrier protein transacylase domain in an iterative type I polyketide synthase

Proceedings of the National Academy of Sciences of the United States of America
2006 | Journal article
DOI: 10.1073/pnas.0604112103
EID:

2-s2.0-33750966150

Part of ISSN: 00278424
Contributors: Crawford, J.M.; Dancy, B.C.R.; Hill, E.A.; Udwary, D.W.; Townsend, C.A.
Source: Self-asserted source
Daniel Udwary via Scopus - Elsevier

Type III polyketide synthase β-ketoacyl-ACP starter unit and ethylmalonyl-CoA extender unit selectivity discovered by Streptomyces coelicolor genome mining

Journal of the American Chemical Society
2006 | Journal article
DOI: 10.1021/ja065247w
EID:

2-s2.0-33845212858

Part of ISSN: 00027863
Contributors: Song, L.; Barona-Gomez, F.; Corre, C.; Xiang, L.; Udwary, D.W.; Austin, M.B.; Noel, J.P.; Moore, B.S.; Challis, G.L.
Source: Self-asserted source
Daniel Udwary via Scopus - Elsevier

Crystal structure of a bacterial type III polyketide synthase and enzymatic control of reactive polyketide intermediates

Journal of Biological Chemistry
2004 | Journal article
DOI: 10.1074/jbc.M406567200
EID:

2-s2.0-7244239181

Part of ISSN: 00219258
Contributors: Austin, M.B.; Izumikawa, M.; Bowman, M.E.; Udwary, D.W.; Ferrer, J.-L.; Moore, B.S.; Noel, J.P.
Source: Self-asserted source
Daniel Udwary via Scopus - Elsevier

A method for prediction of the locations of linker regions within large multifunctional proteins, and application to a type I polyketide synthase

Journal of Molecular Biology
2002 | Journal article
DOI: 10.1016/S0022-2836(02)00972-5
EID:

2-s2.0-0036404537

Part of ISSN: 00222836
Contributors: Udwary, D.W.; Merski, M.; Townsend, C.A.
Source: Self-asserted source
Daniel Udwary via Scopus - Elsevier

Synthesis of 11-hydroxyl O-methylsterigmatocystin and the role of a cytochrome P-450 in the final step of aflatoxin biosynthesis

Journal of the American Chemical Society
2002 | Journal article
DOI: 10.1021/ja012185v
EID:

2-s2.0-0037094126

Part of ISSN: 00027863
Contributors: Udwary, D.W.; Casillas, L.K.; Townsend, C.A.
Source: Self-asserted source
Daniel Udwary via Scopus - Elsevier
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