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https://schmid.chemie.unibas.ch/en/

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Scopus Author ID: 57191627093

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University of Basel: Basel, CH

Employment
Source: Self-asserted source
Sonja Schmid

Works (40)

Nanopores Reveal the Stoichiometry of Single Oligoadenylates Produced by Type III CRISPR-Cas

ACS Nano
2024 | Journal article
DOI: 10.1021/acsnano.3c11769
EID:

2-s2.0-85196477869

Part of ISSN: 1936086X 19360851
Contributors: Fuentenebro Navas, D.; Steens, J.A.; de Lannoy, C.; Noordijk, B.; Pfeffer, M.; de Ridder, D.; H.J. Staals, R.; Schmid, S.
Source: Self-asserted source
Sonja Schmid via Scopus - Elsevier
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Reply to: On the statistical foundation of a recent single molecule FRET benchmark

Nature Communications
2024 | Journal article
DOI: 10.1038/s41467-024-47734-2
EID:

2-s2.0-85191889826

Part of ISSN: 20411723
Contributors: Götz, M.; Barth, A.; Bohr, S.S.R.; Börner, R.; Chen, J.; Cordes, T.; Erie, D.A.; Gebhardt, C.; Hadzic, M.C.A.S.; Hamilton, G.L. et al.
Source: Self-asserted source
Sonja Schmid via Scopus - Elsevier

Single-Molecule FRET-Resolved Protein Dynamics – from Plasmid to Data in Six Steps

Single Molecule Analysis
2024 | Book chapter
DOI: 10.1007/978-1-0716-3377-9_13
Part of ISBN: 9781071633762
Part of ISBN: 9781071633779
Part of ISSN: 1064-3745
Part of ISSN: 1940-6029
Contributors: Benjamin Vermeer; Jannick van Ossenbruggen; Sonja Schmid
Source: Self-asserted source
Sonja Schmid
grade
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The potential of fluorogenicity for single molecule FRET and DyeCycling

QRB Discovery
2024 | Journal article
DOI: 10.1017/qrd.2024.11
Contributors: Srijayee Ghosh; Sonja Schmid
Source: check_circle
Crossref

The known unknowns of the Hsp90 chaperone

eLife
2024-12-31 | Journal article
DOI: 10.7554/eLife.102666
Contributors: Laura-Marie Silbermann; Benjamin Vermeer; Sonja Schmid; Katarzyna Tych
Source: check_circle
Crossref

Understanding Electrophoresis and Electroosmosis in Nanopore Sensing with the Help of the Nanopore Electro-Osmotic Trap

ACS Nano
2024-08-06 | Journal article
DOI: 10.1021/acsnano.4c04788
Contributors: Chenyu Wen; Sonja Schmid; Cees Dekker
Source: check_circle
Crossref

Fluorescence resonance energy transfer at the single-molecule level

Nature Reviews Methods Primers
2024-03-28 | Journal article
DOI: 10.1038/s43586-024-00298-3
Contributors: Taekjip Ha; Jingyi Fei; Sonja Schmid; Nam Ki Lee; Ruben L. Gonzalez, Jr; Sneha Paul; Sanghun Yeou
Source: check_circle
Crossref
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An external speed control for nanopore reads

Nature Nanotechnology
2023 | Journal article
DOI: 10.1038/s41565-023-01477-1
EID:

2-s2.0-85166948554

Part of ISSN: 17483395 17483387
Contributors: Schmid, S.
Source: Self-asserted source
Sonja Schmid via Scopus - Elsevier
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Nanopores reveal the stoichiometry of single oligo-adenylates produced by type III CRISPR-Cas

bioRxiv
2023 | Other
DOI: 10.1101/2023.08.18.553839
EID:

2-s2.0-85173803323

Part of ISSN: 26928205
Contributors: Fuentenebro-Navas, D.; Steens, J.A.; de Lannoy, C.; Noordijk, B.; de Ridder, D.; Staals, R.H.J.; Schmid, S.
Source: Self-asserted source
Sonja Schmid via Scopus - Elsevier
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Orientation-Locked DNA Origami for Stable Trapping of Small Proteins in the Nanopore Electro-Osmotic Trap

Nano Letters
2023 | Journal article
DOI: 10.1021/acs.nanolett.2c03569
EID:

2-s2.0-85144139899

Part of ISSN: 15306992 15306984
Contributors: Wen, C.; Bertosin, E.; Shi, X.; Dekker, C.; Schmid, S.
Source: Self-asserted source
Sonja Schmid via Scopus - Elsevier
grade
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The known unknowns of the Hsp90 chaperone

2023 | Preprint
DOI: 10.48550/ARXIV.2308.16629
Contributors: Laura-Marie Silbermann; Benjamin Vermeer; Sonja Schmid; Katarzyna;
Source: Self-asserted source
Sonja Schmid
grade
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Can DyeCycling break the photobleaching limit in single-molecule FRET?

bioRxiv
2022 | Other
DOI: 10.1101/2022.02.08.479542
EID:

2-s2.0-85127381055

Part of ISSN: 26928205
Contributors: Vermeer, B.; Schmid, S.
Source: Self-asserted source
Sonja Schmid via Scopus - Elsevier
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Can DyeCycling break the photobleaching limit in single-molecule FRET?

Nano Research
2022 | Journal article
DOI: 10.1007/s12274-022-4420-5
EID:

2-s2.0-85132626572

Part of ISSN: 19980000 19980124
Contributors: Vermeer, B.; Schmid, S.
Source: Self-asserted source
Sonja Schmid via Scopus - Elsevier

Orientation-locked DNA origami for stable trapping of small proteins in the NEOtrap

bioRxiv
2022 | Other
DOI: 10.1101/2022.09.09.507286
EID:

2-s2.0-85141266334

Part of ISSN: 26928205
Contributors: Wen, C.; Bertosin, E.; Shi, X.; Dekker, C.; Schmid, S.
Source: Self-asserted source
Sonja Schmid via Scopus - Elsevier
grade
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The NanoBioPhysX Club

2022-09-25 | Website
Contributors: Sonja Schmid
Source: Self-asserted source
Sonja Schmid

A blind benchmark of analysis tools to infer kinetic rate constants from single-molecule FRET trajectories

Nature Communications
2022-09-14 | Journal article | Author
DOI: 10.1038/s41467-022-33023-3
Part of ISSN: 2041-1723
Contributors: Markus Götz; Anders Barth; Søren S.-R. Bohr; Richard Börner; Jixin Chen; Thorben Cordes; Dorothy A. Erie; Christian Gebhardt; Mélodie C. A. S. Hadzic; George L. Hamilton et al.
Source: Self-asserted source
Sonja Schmid
grade
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Nanopore electro-osmotic trap for the label-free study of single proteins and their conformations

Nature Nanotechnology
2021 | Journal article
DOI: 10.1038/s41565-021-00958-5
EID:

2-s2.0-85113984391

Part of ISSN: 17483395 17483387
Contributors: Schmid, S.; Stömmer, P.; Dietz, H.; Dekker, C.
Source: Self-asserted source
Sonja Schmid via Scopus - Elsevier
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Nanopores: A versatile tool to study protein Dynamics

Essays in Biochemistry
2021 | Journal article
DOI: 10.1042/EBC20200020
EID:

2-s2.0-85105026737

Part of ISSN: 00711365
Contributors: Schmid, S.; Dekker, C.
Source: Self-asserted source
Sonja Schmid via Scopus - Elsevier
grade
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The emerging landscape of single-molecule protein sequencing technologies

Nature Methods
2021 | Journal article
DOI: 10.1038/s41592-021-01143-1
EID:

2-s2.0-85107573284

Part of ISSN: 15487105 15487091
Contributors: Alfaro, J.A.; Bohländer, P.; Dai, M.; Filius, M.; Howard, C.J.; van Kooten, X.F.; Ohayon, S.; Pomorski, A.; Schmid, S.; Aksimentiev, A. et al.
Source: Self-asserted source
Sonja Schmid via Scopus - Elsevier
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The NEOtrap – en route with a new single-molecule technique

iScience
2021 | Journal article
DOI: 10.1016/j.isci.2021.103007
EID:

2-s2.0-85119332280

Part of ISSN: 25890042
Contributors: Schmid, S.; Dekker, C.
Source: Self-asserted source
Sonja Schmid via Scopus - Elsevier
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Inferring kinetic rate constants from single-molecule FRET trajectories – a blind benchmark of kinetic analysis tools

[]
2021-11-23 | Preprint
DOI: 10.1101/2021.11.23.469671
Source: Self-asserted source
Sonja Schmid
grade
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Controlling protein function by fine-tuning conformational flexibility

eLife
2020 | Journal article
DOI: 10.7554/eLife.57180
EID:

2-s2.0-85088456780

Part of ISSN: 2050084X
Contributors: Schmid, S.; Hugel, T.
Source: Self-asserted source
Sonja Schmid via Scopus - Elsevier
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Nanopores – A versatile tool to study protein dynamics

arXiv
2020 | Other
DOI: 10.48550/arxiv.2010.07399
EID:

2-s2.0-85171225690

Part of ISSN: 23318422
Contributors: Schmid, S.; Dekker, C.
Source: Self-asserted source
Sonja Schmid via Scopus - Elsevier

Comparing Current Noise in Biological and Solid-State Nanopores

ACS Nano
2020-02-25 | Journal article
DOI: 10.1101/866384
DOI: 10.1021/acsnano.9b09353
PMID: 32049492
Part of ISSN: 1936-0851
Part of ISSN: 1936-086X
Source: Self-asserted source
Sonja Schmid
grade
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Same equilibrium. Different kinetics. Protein functional consequences

bioRxiv
2019 | Other
DOI: 10.1101/838938
EID:

2-s2.0-85095642344

Part of ISSN: 26928205
Contributors: Schmid, S.; Hugel, T.
Source: Self-asserted source
Sonja Schmid via Scopus - Elsevier
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Effects of inhibitors on Hsp90's conformational dynamics, cochaperone and client interactions

bioRxiv
2018 | Journal article
DOI: 10.1101/255190
ARXIV:

https://www.biorxiv.org/content/early/2018/01/28/255190.full.pdf
Source: Self-asserted source
Sonja Schmid
grade
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Effects of Inhibitors on Hsp90′s Conformational Dynamics, Cochaperone and Client Interactions

ChemPhysChem
2018 | Journal article
DOI: 10.1002/cphc.201800342
EID:

2-s2.0-85050180827

Part of ISSN: 14397641 14394235
Contributors: Schmid, S.; Götz, M.; Hugel, T.
Source: Self-asserted source
Sonja Schmid via Scopus - Elsevier
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Efficient use of single molecule time traces to resolve kinetic rates, models and uncertainties

The Journal of Chemical Physics
2018 | Journal article
DOI: 10.1063/1.5006604
ARXIV:

https://doi.org/10.1063/1.5006604

Source: Self-asserted source
Sonja Schmid
grade
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Erratum to: Precision and accuracy of single-molecule FRET measurements—a multi-laboratory benchmark study (Nature Methods, (2018), 15, 9, (669-676), 10.1038/s41592-018-0085-0)

Nature Methods
2018 | Journal article
DOI: 10.1038/s41592-018-0193-x
EID:

2-s2.0-85055082439

Part of ISSN: 15487105 15487091
Contributors: Hellenkamp, B.; Schmid, S.; Doroshenko, O.; Opanasyuk, O.; Kühnemuth, R.; Adariani, S.R.; Ambrose, B.; Aznauryan, M.; Barth, A.; Birkedal, V. et al.
Source: Self-asserted source
Sonja Schmid via Scopus - Elsevier
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Precision and accuracy of single-molecule FRET measurements—a multi-laboratory benchmark study

Nature Methods
2018 | Journal article
DOI: 10.1038/s41592-018-0085-0
EID:

2-s2.0-85052699968

Part of ISSN: 15487105 15487091
Contributors: Hellenkamp, B.; Schmid, S.; Doroshenko, O.; Opanasyuk, O.; Kühnemuth, R.; Rezaei Adariani, S.; Ambrose, B.; Aznauryan, M.; Barth, A.; Birkedal, V. et al.
Source: Self-asserted source
Sonja Schmid via Scopus - Elsevier
grade
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Using three-color single-molecule FRET to study the correlation of protein interactions

Journal of Visualized Experiments
2018 | Journal article
DOI: 10.3791/56896
EID:

2-s2.0-85042046379

Part of ISSN: 1940087X
Contributors: Götz, M.; Wortmann, P.; Schmid, S.; Hugel, T.
Source: Self-asserted source
Sonja Schmid via Scopus - Elsevier

Using Three-color Single-molecule FRET to Study the Correlation of Protein Interactions

2018 | Journal article
Part of ISBN: 1940-087X
Source: Self-asserted source
Sonja Schmid

Efficient use of single molecule time traces to resolve kinetic rates, models and uncertainties

arXiv
2017 | Other
DOI: 10.48550/arxiv.1709.08270
EID:

2-s2.0-85170939669

Part of ISSN: 23318422
Contributors: Schmid, S.; Hugel, T.
Source: Self-asserted source
Sonja Schmid via Scopus - Elsevier

Precision and accuracy of single-molecule FRET measurements - a worldwide benchmark study

arXiv
2017 | Other
DOI: 10.48550/arxiv.1710.03807
EID:

2-s2.0-85169966180

Part of ISSN: 23318422
Contributors: Hellenkamp, B.; Schmid, S.; Doroshenko, O.; Opanasyuk, O.; Kühnemuth, R.; Adariani, S.R.; Barth, A.; Birkedal, V.; Bowen, M.E.; Chen, H. et al.
Source: Self-asserted source
Sonja Schmid via Scopus - Elsevier

Precision and accuracy of single-molecule FRET measurements - a worldwide benchmark study

ArXiv e-prints
2017-10 | Journal article
ARXIV: 1710.03807
Source: Self-asserted source
Sonja Schmid

A Multicolor Single-Molecule FRET Approach to Study Protein Dynamics and Interactions Simultaneously

Methods in Enzymology
2016 | Book chapter
DOI: 10.1016/bs.mie.2016.08.024
EID:

2-s2.0-84992184479

Part of ISSN: 15577988 00766879
Contributors: Götz, M.; Wortmann, P.; Schmid, S.; Hugel, T.
Source: Self-asserted source
Sonja Schmid via Scopus - Elsevier
grade
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Single-Molecule Analysis beyond Dwell Times: Demonstration and Assessment in and out of Equilibrium

Biophysical Journal
2016 | Journal article
DOI: 10.1016/j.bpj.2016.08.023
EID:

2-s2.0-85002768958

Part of ISSN: 15420086 00063495
Contributors: Schmid, S.; Götz, M.; Hugel, T.
Source: Self-asserted source
Sonja Schmid via Scopus - Elsevier
grade
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Experiment-friendly kinetic analysis of single molecule data in and out of equilibrium

2016-05 | Other
DOI: 10.1101/054577
Contributors: Sonja Schmid; Markus Götz; Thorsten Hugel
Source: Self-asserted source
Sonja Schmid via Crossref Metadata Search

Quantitative Protein Kinetics from sm-FRET Time Traces

Biophysical Journal
2016-02 | Journal article
DOI: 10.1016/j.bpj.2015.11.1082
Contributors: Sonja Schmid; Markus Goetz; Thorsten Hugel
Source: Self-asserted source
Sonja Schmid via Crossref Metadata Search

Regulatory Posttranslational Modifications in Hsp90 Can Be Compensated by Cochaperone Aha1

Molecular Cell
2011 | Journal article
DOI: 10.1016/j.molcel.2011.02.028
EID:

2-s2.0-79952667347

Part of ISSN: 10972765 10974164
Contributors: Schmid, S.; Hugel, T.
Source: Self-asserted source
Sonja Schmid via Scopus - Elsevier
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Peer review (10 reviews for 6 publications/grants)

Review activity for ACS nano. (2)
Review activity for Nature chemistry. (1)
Review activity for Nature communications (2)
Review activity for Nature nanotechnology (1)
Review activity for Nature protocols (1)
Review activity for The journal of physical chemistry. (3)
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