Personal information

Biography

Professor, Department of Chemistry and Biochemistry, University of Wisconsin-Eau Claire

Activities

Employment (7)

University of Wisconsin-Eau Claire: Eau Claire, WI, US

2022 to present | Professor (Chemistry and Biochemistry)
Employment
Source: Self-asserted source
Sudeep Bhattacharyya

University of Wisconsin–Eau Claire: Eau Claire, Wisconsin, US

2017 to 2021 | Associate Professor (Chemistry and Biochemistry)
Employment
Source: Self-asserted source
Sudeep Bhattacharyya

University of Wisconsin Eau Claire: Eau Claire, WI, US

2011 to 2017 | Assistant Professor (Chemistry)
Employment
Source: Self-asserted source
Sudeep Bhattacharyya

University of Wisconsin Eau Claire: Eau Claire, WI, US

2007 to 2011 | Adjunct Research Professor (Chemistry)
Employment
Source: Self-asserted source
Sudeep Bhattacharyya

University of Minnesota : Minneapolis, MN, US

2003 to 2007 | Postdoctoral Research Associate (Chemistry)
Employment
Source: Self-asserted source
Sudeep Bhattacharyya

Indiana University: Bloomington, US

2000 to 2002 | Postdoctoral Research Associate (Chemistry)
Employment
Source: Self-asserted source
Sudeep Bhattacharyya

Simon Fraser University: Burnaby, BC, CA

1998 to 2000 | Postdoctoral Researcher (Chemistry)
Employment
Source: Self-asserted source
Sudeep Bhattacharyya

Education and qualifications (3)

Indian Association for the Cultivation of Science: Kolkata, West Bengal, IN

1991 to 1997 | PhD (Chemistry)
Education
Source: Self-asserted source
Sudeep Bhattacharyya

Indian Institute of Technology Kharagpur: Kharagpur, West Bengal, IN

1989 to 1991 | Master of Science (Chemistry)
Education
Source: Self-asserted source
Sudeep Bhattacharyya

Indian Institute of Technology Kharagpur: Kharagpur, West Bengal, IN

1986 to 1989 | Bachelor of Science (Chemistry)
Education
Source: Self-asserted source
Sudeep Bhattacharyya

Funding (2)

Exploring the Dynamics of Aminoacyl-tRNA Synthetases: Towards Developing a Screening Method for Species-Specific Inhibitors

2016-02 to 2019 | Grant
NIH Office of the Director (Bethesda, MD, US)
GRANT_NUMBER:

1R15GM117510-01

Source: Self-asserted source
Sudeep Bhattacharyya

Towards Developing a Computational Inhibitor Screening Method for Quinone Reductase

Award
Research Corporation for Science Advancement (AZ, AZ, US)
GRANT_NUMBER: CCSA 23223
Source: Self-asserted source
Sudeep Bhattacharyya

Research resources (1)

To Explore the Role of Thiol-Disulfide Balance on the Binding of Covid-19 Spike Protein with Angiotensin Converting Enzyme 2 Receptor

Works (46)

Efficient and Explainable Virtual Screening of Molecules through Fingerprint-Generating Networks Integrated with Artificial Neural Networks

ACS Omega
2025-02-11 | Journal article
Contributors: Rivaaj Monsia; Sudeep Bhattacharyya
Source: check_circle
Crossref

A Review of Methionine and Cysteine: Their Roles as Sinks for Reactive Oxygen and Nitrogen Species, Including Bioinformatic Analysis of Their Percent Compositions in Metabolic Proteins

Indian Journal of Clinical Biochemistry
2024-11-22 | Journal article
Part of ISSN: 0970-1915
Part of ISSN: 0974-0422
Contributors: Bethany F. Laatsch; Burhan A. Ali; Anna R. Berthiaume; Grace C. Cunningham; Sabrina M. Duncan; Nathan Hau; Audrey Ho; Marais A. Loomis; Harrison R. Lowater; Brenya L. McNally et al.
Source: Self-asserted source
Sudeep Bhattacharyya

Conformational fluidity of intrinsically disordered proteins in crowded environment: a molecular dynamics simulation study

Journal of Biomolecular Structure and Dynamics
2024-09-16 | Journal article | Author
Part of ISSN: 0739-1102
Part of ISSN: 1538-0254
Contributors: Carolyn Shult; Keegan Gunderson; Stephen J. Coffey; Brenya McNally; Michael Brandt; Lucille Smith; Joshua Steczynski; Ethan R. Olerich; Sydney E. Schroeder; Nathaniel J. Severson et al.
Source: Self-asserted source
Sudeep Bhattacharyya

Polyethylene Glycol Impacts Conformation and Dynamics of <i>Escherichia coli</i> Prolyl-tRNA Synthetase Via Crowding and Confinement Effects

Biochemistry
2024-07-02 | Journal article | Author
Part of ISSN: 0006-2960
Part of ISSN: 1520-4995
Contributors: Jessica Liebau; Bethany F. Laatsch; Joshua Rusnak; Keegan Gunderson; Brianna Finke; Kassandra Bargender; Alex Narkiewicz-Jodko; Katelyn Weeks; Murphi T. Williams; Irina Shulgina et al.
Source: Self-asserted source
Sudeep Bhattacharyya

Writing a literature review as a class project in an <scp>upper‐level</scp> undergraduate biochemistry course

Biochemistry and Molecular Biology Education
2024-05 | Journal article
Part of ISSN: 1470-8175
Part of ISSN: 1539-3429
Contributors: Sanchita Hati; Sudeep Bhattacharyya
Source: Self-asserted source
Sudeep Bhattacharyya

High-performance computing in undergraduate education at primarily undergraduate institutions in Wisconsin: Progress, challenges, and opportunities

Education and Information Technologies
2024-03-09 | Journal article | Author
Part of ISSN: 1360-2357
Part of ISSN: 1573-7608
Contributors: Jordan Hebert; Ryan Hratisch; Rahul Gomes; William Kunkel; Daniel Marshall; Abhimanyu Ghosh; Isabella Doss; Ying Ma; Derek Stedman; Blake Stinson et al.
Source: Self-asserted source
Sudeep Bhattacharyya

Insights into the Mechanism of Tryptophan Fluorescence Quenching due to Synthetic Crowding Agents: A Combined Experimental and Computational Study

ACS Omega
2023-11-28 | Journal article
Contributors: Carl J. Fossum; Benjamin O. V. Johnson; Spencer T. Golde; Alexis J. Kielman; Brianna Finke; Macey A. Smith; Harrison R. Lowater; Bethany F. Laatsch; Sudeep Bhattacharyya; Sanchita Hati
Source: check_circle
Crossref

Polyethylene Glycol 20k. Does It Fluoresce?

ACS Omega
2023-04-18 | Journal article | Author
Part of ISSN: 2470-1343
Part of ISSN: 2470-1343
Contributors: Bethany F. Laatsch; Michael Brandt; Brianna Finke; Carl J. Fossum; Miles J. Wackett; Harrison R. Lowater; Alex Narkiewicz-Jodko; Christine N. Le; Thao Yang; Elizabeth M. Glogowski et al.
Source: Self-asserted source
Sudeep Bhattacharyya

Inter-institutional Resource Sharing in Undergraduate HPC Education

2023-03-02 | Conference paper
Contributors: Abhimanyu Ghosh; William Kunkel; Anthony Varghese; Ying Ma; Rahul Gomes; Sudeep Bhattacharyya; Molly Mohr; Isabella Doss; Jordan Hebert
Source: check_circle
Crossref

Evolution of Stronger SARS-CoV-2 Variants as Revealed Through the Lens of Molecular Dynamics Simulations

The Protein Journal
2022-10 | Journal article | Author
Part of ISSN: 1572-3887
Part of ISSN: 1875-8355
Contributors: Alec J. Wozney; Macey A. Smith; Mobeen Abdrabbo; Cole M. Birch; Kelsey A. Cicigoi; Connor C. Dolan; Audrey E. L. Gerzema; Abby Hansen; Ethan J. Henseler; Ben LaBerge et al.
Source: Self-asserted source
Sudeep Bhattacharyya

Pre-Existing Oxidative Stress Creates a Docking-Ready Conformation of the SARS-CoV-2 Receptor-Binding Domain

ACS Bio & Med Chem Au
2022-02-16 | Journal article
Contributors: Carl J. Fossum; Bethany F. Laatsch; Harrison R. Lowater; Alex W. Narkiewicz-Jodko; Leo Lonzarich; Sanchita Hati; Sudeep Bhattacharyya
Source: check_circle
Crossref

Vitamin D and COVID‐19: A review on the role of vitamin D in preventing and reducing the severity of <scp>COVID</scp>‐19 infection

Protein Science
2021-11 | Journal article
Part of ISSN: 0961-8368
Part of ISSN: 1469-896X
Contributors: Mobeen Abdrabbo; Cole M. Birch; Michael Brandt; Kelsey A. Cicigoi; Stephen J. Coffey; Connor C. Dolan; Hannah Dvorak; Ava C. Gehrke; Audrey E. L. Gerzema; Abby Hansen et al.
Source: Self-asserted source
Sudeep Bhattacharyya

Effects of Distal Mutations on Prolyl-Adenylate Formation of Escherichia coli Prolyl-tRNA Synthetase.

The protein journal
2020-10 | Journal article
Contributors: Zajac J; Anderson H; Adams L; Wangmo D; Suhail S; Almen A; Berns L; Coerber B; Dawson L; Hunger A et al.
Source: Self-asserted source
Sudeep Bhattacharyya via Europe PubMed Central

Role of Oxidative Stress on SARS-CoV (SARS) and SARS-CoV-2 (COVID-19) Infection: A Review.

The protein journal
2020-10 | Journal article
Contributors: Suhail S; Zajac J; Fossum C; Lowater H; McCracken C; Severson N; Laatsch B; Narkiewicz-Jodko A; Johnson B; Liebau J et al.
Source: Self-asserted source
Sudeep Bhattacharyya via Europe PubMed Central

Editing Domain Motions Preorganize the Synthetic Active Site of Prolyl-tRNA Synthetase

ACS Catalysis
2020-09-04 | Journal article
Contributors: Quin H. Hu; Murphi T. Williams; Irina Shulgina; Carl J. Fossum; Katelyn M. Weeks; Lauren M. Adams; Clorice R. Reinhardt; Karin Musier-Forsyth; Sanchita Hati; Sudeep Bhattacharyya
Source: check_circle
Crossref

Impact of Thiol–Disulfide Balance on the Binding of Covid-19 Spike Protein with Angiotensin-Converting Enzyme 2 Receptor

ACS Omega
2020-07-07 | Journal article
Contributors: Sanchita Hati; Sudeep Bhattacharyya
Source: check_circle
Crossref

Crowder-Induced Conformational Ensemble Shift in Escherichia coli Prolyl-tRNA Synthetase

Biophysical Journal
2019-10 | Journal article
Contributors: Lauren M. Adams; Ryan J. Andrews; Quin H. Hu; Heidi L. Schmit; Sanchita Hati; Sudeep Bhattacharyya
Source: check_circle
Crossref

Cyclic Changes in Active Site Polarization and Dynamics Drive the “Ping-pong” Kinetics in NRH:Quinone Oxidoreductase 2: An Insight from QM/MM Simulations

ACS Catalysis
2018-12-07 | Journal article
Contributors: Clorice R. Reinhardt; Quin H. Hu; Caitlin G. Bresnahan; Sanchita Hati; Sudeep Bhattacharyya
Source: check_circle
Crossref

Integrating Research into the Curriculum: A Low-Cost Strategy for Promoting Undergraduate Research

ACS Symposium Series
2018-01 | Book chapter
Part of ISBN: 9780841232846
Part of ISBN: 9780841232839
Part of ISSN: 0097-6156
Part of ISSN: 1947-5918
Contributors: Sanchita Hati; Sudeep Bhattacharyya
Source: Self-asserted source
Sudeep Bhattacharyya

Incorporating modeling and simulations in undergraduate biophysical chemistry course to promote understanding of structure-dynamics-function relationships in proteins

Biochemistry and Molecular Biology Education
2016 | Journal article
EID:

2-s2.0-84961200547

Contributors: Hati, S.; Bhattacharyya, S.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Insight into the kinetics and thermodynamics of the hydride transfer reactions between quinones and lumiflavin: a density functional theory study

Journal of Molecular Modeling
2016 | Journal article
EID:

2-s2.0-84982813825

Contributors: Reinhardt, C.R.; Jaglinski, T.C.; Kastenschmidt, A.M.; Song, E.H.; Gross, A.K.; Krause, A.J.; Gollmar, J.M.; Meise, K.J.; Stenerson, Z.S.; Weibel, T.J. et al.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Effect of stacking interactions on the thermodynamics and kinetics of lumiflavin: A study with improved density functionals and density functional tight-binding protocol

Journal of Physical Chemistry A
2015 | Journal article
EID:

2-s2.0-84920711909

Contributors: Bresnahan, C.G.; Reinhardt, C.R.; Bartholow, T.G.; Rumpel, J.P.; North, M.; Bhattacharyya, S.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Comparison of the intrinsic dynamics of aminoacyl-tRNA synthetases

Protein Journal
2014 | Journal article
EID:

2-s2.0-84898548179

Contributors: Warren, N.; Strom, A.; Nicolet, B.; Albin, K.; Albrecht, J.; Bausch, B.; Dobbe, M.; Dudek, M.; Firgens, S.; Fritsche, C. et al.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Probing the global and local dynamics of aminoacyl-tRNA synthetases using all-atom and coarse-grained simulations

Journal of Molecular Modeling
2014 | Journal article
EID:

2-s2.0-84901522655

Contributors: Strom, A.M.; Fehling, S.C.; Bhattacharyya, S.; Hati, S.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Strictly conserved lysine of prolyl-tRNA synthetase editing domain facilitates binding and positioning of misacylated tRNA<sup>Pro</sup>

Biochemistry
2014 | Journal article
EID:

2-s2.0-84894287747

Contributors: Bartholow, T.G.; Sanford, B.L.; Cao, B.; Schmit, H.L.; Johnson, J.M.; Meitzner, J.; Bhattacharyya, S.; Musier-Forsyth, K.; Hati, S.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Multiple pathways promote dynamical coupling between catalytic domains in Escherichia coli prolyl-tRNA synthetase

Biochemistry
2013 | Journal article
EID:

2-s2.0-84879531157

Contributors: Johnson, J.M.; Sanford, B.L.; Strom, A.M.; Tadayon, S.N.; Lehman, B.P.; Zirbes, A.M.; Bhattacharyya, S.; Musier-Forsyth, K.; Hati, S.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Role of coupled dynamics in the catalytic activity of prokaryotic-like prolyl-tRNA synthetases

Biochemistry
2012 | Journal article
EID:

2-s2.0-84863231720

Contributors: Sanford, B.; Cao, B.; Johnson, J.M.; Zimmerman, K.; Strom, A.M.; Mueller, R.M.; Bhattacharyya, S.; Musier-Forsyth, K.; Hati, S.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Interplay of Flavin's redox states and protein dynamics: An insight from QM/MM simulations of dihydronicotinamide riboside quinone oxidoreductase 2

Journal of Physical Chemistry B
2011 | Journal article
EID:

2-s2.0-79953288965

Contributors: Mueller, R.M.; North, M.A.; Yang, C.; Hati, S.; Bhattacharyya, S.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Improved density functional description of the electrochemistry and structure-property descriptors of substituted flavins

Journal of Physical Chemistry B
2010 | Journal article
EID:

2-s2.0-78649536052

Contributors: North, M.A.; Bhattacharyya, S.; Truhlar, D.G.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Critical role of substrate conformational change in the proton transfer process catalyzed by 4-oxalocrotonate tautomerase

Journal of the American Chemical Society
2009 | Journal article
EID:

2-s2.0-67849085413

Contributors: Ruiz-Pernía, J.J.; Garcia-Viloca, M.; Bhattacharyya, S.; Gao, J.; Truhlar, D.G.; Tuñón, I.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Evolutionary basis for the coupled-domain motions in Thermus thermophilus leucyl-tRNA synthetase

Journal of Biological Chemistry
2009 | Journal article
EID:

2-s2.0-65649152953

Contributors: Weimer, K.M.E.; Shane, B.L.; Brunetto, M.; Bhattacharyya, S.; Hati, S.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Theoretical determination of the redox potentials of NRH:Quinone oxidoreductase 2 using quantum mechanical/molecular mechanical simulations

Journal of Physical Chemistry B
2009 | Journal article
EID:

2-s2.0-67649308717

Contributors: Rauschnot Jr., J.C.; Yang, C.; Yang, V.; Bhattacharyya, S.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Combined quantum mechanical and molecular mechanical simulations of one- and two-electron reduction potentials of flavin cofactor in water, medium-chain acyl-CoA dehydrogenase, and cholesterol oxidase

Journal of Physical Chemistry A
2007 | Journal article
EID:

2-s2.0-34547446110

Contributors: Bhattacharyya, S.; Stankovich, M.T.; Truhlar, D.G.; Gao, J.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Potential of mean force calculation for the proton and hydride transfer reactions catalyzed by medium-chain Acyl-CoA dehydrogenase: Effect of mutations on enzyme catalysis

Biochemistry
2005 | Journal article
EID:

2-s2.0-29244444539

Contributors: Bhattacharyya, S.; Ma, S.; Stankovich, M.T.; Truhlar, D.G.; Gao, J.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Comparative modeling of the phosphatase and kinase domains of protein tyrosine phosphatase and insulin receptor kinase from Drosophila melanogaster (DPTP61fm), and a computational study of their mutual interactions

Biochemistry and Cell Biology
2002 | Journal article
EID:

2-s2.0-0036205265

Contributors: Hati, S.; Bhattacharyya, S.; Price, J.V.; Tracey, A.S.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Synthesis, characterization, and reactivity of mononuclear O,N-chelated vanadium(IV) and -(III) complexes of methyl 2-aminocyclopent-1-ene-1-dithiocarboxylate based ligand: Reporting an example of conformational isomerism in the solid state

Inorganic Chemistry
2002 | Journal article
EID:

2-s2.0-0037029886

Contributors: Bhattacharyya, S.; Mukhopadhyay, S.; Samanta, S.; Weakley, T.J.R.; Chaudhury, M.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Fluorescent analogs of UDP-glucose and their use in characterizing substrate binding by toxin A from Clostridium difficile.

European journal of biochemistry
2002-07 | Journal article
Contributors: Bhattacharyya S; Kerzmann A; Feig AL
Source: Self-asserted source
Sudeep Bhattacharyya via Europe PubMed Central

N,N-dimethylhydroxamidovanadium(V). Interactions with sulfhydryl-containing ligands: V(V) equilibria and the structure of a V(IV) dithiothreitolato complex

Canadian Journal of Chemistry
2001 | Journal article
EID:

2-s2.0-0034892238

Contributors: Bhattacharyya, S.; Martinsson, A.; Batchelor, R.J.; Einstein, F.W.B.; Tracey, A.S.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Vanadium(V) complexes in enzyme systems: Aqueous chemistry, inhibition and molecular modeling in inhibitor design

Journal of Inorganic Biochemistry
2001 | Journal article
EID:

2-s2.0-0034988061

Contributors: Bhattacharyya, S.; Tracey, A.S.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Syntheses, structure and properties of cobalt-(n) and -(HI) complexes of pentadentate N4S ligands with appended pyrazolyl groups: Evidence for cobalt(n)-dioxygen reversible binding

Journal of the Chemical Society, Dalton Transactions
2000 | Journal article
EID:

2-s2.0-0009155268

Contributors: Bhattacharyya, S.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Crystal structure and solution studies of the product of the reaction of β-mercaptoethanol with vanadate

Canadian Journal of Chemistry
1999 | Journal article
EID:

2-s2.0-0033381380

Contributors: Bhattacharyya, S.; Batchelor, R.J.; Einstein, F.W.B.; Tracey, A.S.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Nickel(II)-induced activation of a carbon-nitrogen single bond(s) of a co-ordinated ligand by hydroxylated substrates: Generation of mono- and bi-nuclear complexes with modified ligand frameworks

Journal of the Chemical Society - Dalton Transactions
1999 | Journal article
EID:

2-s2.0-33748509944

Contributors: Bhattacharyya, S.; Ghosh, D.; Endo, A.; Shimizu, K.; Weakley, T.J.R.; Chaudhury, M.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Intramolecular Electron Transfer in (BzImH)[(LOV)<inf>2</inf>O] (H<inf>2</inf>L = S-Methyl 3-((2-Hydroxyphenyl)methyl)dithiocarbazate): A Novel μ-Oxo Dinuclear Oxovanadium(IV/V) Compound with a Trapped-Valence (V<inf>2</inf>O<inf>3</inf>)<sup>3+</sup> Core

Inorganic Chemistry
1997 | Journal article
EID:

2-s2.0-0000697509

Contributors: Dutta, S.K.; Kumar, S.B.; Bhattacharyya, S.; Tiekink, E.R.T.; Chaudhury, M.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Zinc(II) and Copper(II) Complexes of Pentacoordinating (N<inf>4</inf>S) Ligands with Flexible Pyrazolyl Arms: Syntheses, Structure, and Redox and Spectroscopic Properties

Inorganic Chemistry
1996 | Journal article
EID:

2-s2.0-0001501703

Contributors: Bhattacharyya, S.; Kumar, S.B.; Dutta, S.K.; Tiekink, E.R.T.; Chaudhury, M.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Mononuclear manganese(III) complexes of a heterodonor (N<inf>2</inf>OS) ligand containing thiolate-type sulfur: Synthesis, structure, redox and spectroscopic properties

Journal of the Chemical Society, Dalton Transactions
1995 | Journal article
EID:

2-s2.0-37049087287

Contributors: Kumar, S.B.; Bhattacharyya, S.; Dutta, S.K.; Tiekink, E.R.T.; Chaudhury, M.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Chemistry of molybdenum. Part 9. Non-oxomolybdenum(IV) and mononuclear oxomolybdenum(V) complexes with dithioacid ligands

Journal of the Chemical Society, Dalton Transactions
1994 | Journal article
EID:

2-s2.0-1642325948

Contributors: Dutta, S.K.; Kumar, S.B.; Bhattacharyya, S.; Chaudhury, M.
Source: Self-asserted source
Sudeep Bhattacharyya via Scopus - Elsevier

Peer review (13 reviews for 8 publications/grants)

Review activity for ACS chemical neuroscience. (1)
Review activity for ACS omega. (5)
Review activity for Biochemistry. (1)
Review activity for ChemBioChem. (1)
Review activity for Education and information technologies. (2)
Review activity for Journal of chemical theory and computation : (1)
Review activity for Journal of medicinal chemistry. (1)
Review activity for The protein journal. (1)