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Scopus Author ID: 18935244900

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Employment (1)

Texas A&M University: College Station, Texas, US

Associate Professor (Department of Computer Science & Engineering)
Employment
Source: Self-asserted source
Shuiwang Ji

Education and qualifications (1)

Arizona State University: Tempe, AZ, US

PhD (Computer Science and Engineering)
Education
Source: Self-asserted source
Shuiwang Ji

Works (50 of 115)

Items per page:
Page 1 of 3

Deep Learning of High-Order Interactions for Protein Interface Prediction

Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining
2020 | Conference paper
DOI: 10.1145/3394486.3403110
EID:

2-s2.0-85090404378
Contributors: Liu, Y.; Yuan, H.; Cai, L.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Deep Model Based Transfer and Multi-Task Learning for Biological Image Analysis

IEEE Transactions on Big Data
2020 | Journal article
DOI: 10.1109/TBDATA.2016.2573280
EID:

2-s2.0-85089763253

Part of ISBN:

23327790
Contributors: Zhang, W.; Li, R.; Zeng, T.; Sun, Q.; Kumar, S.; Ye, J.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Deep neural networks with knowledge instillation

Proceedings of the 2020 SIAM International Conference on Data Mining, SDM 2020
2020 | Conference paper
DOI: 10.1137/1.9781611976236.42
EID:

2-s2.0-85089199655
Contributors: Yang, F.; Liu, N.; Du, M.; Zhou, K.; Ji, S.; Hu, X.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Global Pixel Transformers for Virtual Staining of Microscopy Images

IEEE Transactions on Medical Imaging
2020 | Journal article
DOI: 10.1109/TMI.2020.2968504
EID:

2-s2.0-85084367444

Part of ISBN:

1558254X 02780062
Contributors: Liu, Y.; Yuan, H.; Wang, Z.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Kronecker Attention Networks

Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining
2020 | Conference paper
DOI: 10.1145/3394486.3403065
EID:

2-s2.0-85090420510
Contributors: Gao, H.; Wang, Z.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Pixel Transposed Convolutional Networks

IEEE Transactions on Pattern Analysis and Machine Intelligence
2020 | Journal article
DOI: 10.1109/TPAMI.2019.2893965
EID:

2-s2.0-85075679682

Part of ISBN:

19393539 01628828
Contributors: Gao, H.; Yuan, H.; Wang, Z.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Towards Deeper Graph Neural Networks

Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining
2020 | Conference paper
DOI: 10.1145/3394486.3403076
EID:

2-s2.0-85090409947
Contributors: Liu, M.; Gao, H.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

XGNN: Towards Model-Level Explanations of Graph Neural Networks

Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining
2020 | Conference paper
DOI: 10.1145/3394486.3403085
EID:

2-s2.0-85090409422
Contributors: Yuan, H.; Tang, J.; Hu, X.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

A Deep Learning Approach for Targeted Contrast-Enhanced Ultrasound Based Prostate Cancer Detection

IEEE/ACM Transactions on Computational Biology and Bioinformatics
2019 | Journal article
DOI: 10.1109/TCBB.2018.2835444
EID:

2-s2.0-85046756724

Part of ISBN:

15579964 15455963
Contributors: Feng, Y.; Yang, F.; Zhou, X.; Guo, Y.; Tang, F.; Ren, F.; Guo, J.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

A deep transfer learning approach for improved post-traumatic stress disorder diagnosis

Knowledge and Information Systems
2019 | Journal article
DOI: 10.1007/s10115-019-01337-2
EID:

2-s2.0-85061233419

Part of ISBN:

02193116 02191377
Contributors: Banerjee, D.; Islam, K.; Xue, K.; Mei, G.; Xiao, L.; Zhang, G.; Xu, R.; Lei, C.; Ji, S.; Li, J.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

An efficient policy gradient method for conditional dialogue generation

Proceedings - IEEE International Conference on Data Mining, ICDM
2019 | Conference paper
DOI: 10.1109/ICDM.2019.00013
EID:

2-s2.0-85078906306

Part of ISBN:

15504786
Contributors: Cai, L.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

An interpretable neural model with interactive stepwise influence

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2019 | Book
DOI: 10.1007/978-3-030-16142-2_41
EID:

2-s2.0-85065017486

Part of ISBN:

16113349 03029743
Contributors: Zhang, Y.; Liu, N.; Ji, S.; Caverlee, J.; Hu, X.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Computational modeling of cellular structures using conditional deep generative networks

Bioinformatics
2019 | Journal article
DOI: 10.1093/bioinformatics/bty923
EID:

2-s2.0-85068394661

Part of ISBN:

14602059 13674803
Contributors: Yuan, H.; Cai, L.; Wang, Z.; Hu, X.; Zhang, S.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Dense transformer networks for brain electron microscopy image segmentation

IJCAI International Joint Conference on Artificial Intelligence
2019 | Conference paper
DOI: 10.24963/ijcai.2019/401
EID:

2-s2.0-85074904359

Part of ISBN:

10450823
Contributors: Li, J.; Chen, Y.; Cai, L.; Davidson, I.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Graph representation learning via hard and channel-wise attention networks

Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining
2019 | Conference paper
DOI: 10.1145/3292500.3330897
EID:

2-s2.0-85071192074
Contributors: Gao, H.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Graph U-nets

36th International Conference on Machine Learning, ICML 2019
2019 | Conference paper
EID:

2-s2.0-85071171306
Contributors: Gao, H.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Interpreting deep models for text analysis via optimization and regularization methods

33rd AAAI Conference on Artificial Intelligence, AAAI 2019, 31st Innovative Applications of Artificial Intelligence Conference, IAAI 2019 and the 9th AAAI Symposium on Educational Advances in Artificial Intelligence, EAAI 2019
2019 | Conference paper
EID:

2-s2.0-85066885004
Contributors: Yuan, H.; Chen, Y.; Hu, X.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Learning graph pooling and hybrid convolutional operations for text representations

The Web Conference 2019 - Proceedings of the World Wide Web Conference, WWW 2019
2019 | Conference paper
DOI: 10.1145/3308558.3313395
EID:

2-s2.0-85066901164
Contributors: Gao, H.; Chen, Y.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Learning hierarchical and shared features for improving 3D neuron reconstruction

Proceedings - IEEE International Conference on Data Mining, ICDM
2019 | Conference paper
DOI: 10.1109/ICDM.2019.00091
EID:

2-s2.0-85078947193

Part of ISBN:

15504786
Contributors: Yuan, H.; Zou, N.; Zhang, S.; Peng, H.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Learning local and global multi-context representations for document classification

Proceedings - IEEE International Conference on Data Mining, ICDM
2019 | Conference paper
DOI: 10.1109/ICDM.2019.00153
EID:

2-s2.0-85078880189

Part of ISBN:

15504786
Contributors: Liu, Y.; Yuan, H.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Multi-stage variational auto-encoders for coarse-to-fine image generation

SIAM International Conference on Data Mining, SDM 2019
2019 | Conference paper
DOI: 10.1137/1.9781611975673.71
EID:

2-s2.0-85066074381
Contributors: Cai, L.; Gao, H.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

On attribution of recurrent neural network predictions via additive decomposition

The Web Conference 2019 - Proceedings of the World Wide Web Conference, WWW 2019
2019 | Conference paper
DOI: 10.1145/3308558.3313545
EID:

2-s2.0-85066887124
Contributors: Du, M.; Liu, N.; Yang, F.; Ji, S.; Hu, X.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Spatial variational auto-encoding via matrix-variate normal distributions

SIAM International Conference on Data Mining, SDM 2019
2019 | Conference paper
DOI: 10.1137/1.9781611975673.73
EID:

2-s2.0-85066066529
Contributors: Wang, Z.; Yuan, H.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

XFake: Explainable fake news detector with visualizations

The Web Conference 2019 - Proceedings of the World Wide Web Conference, WWW 2019
2019 | Conference paper
DOI: 10.1145/3308558.3314119
EID:

2-s2.0-85066910246
Contributors: Yang, F.; Du, M.; Ragan, E.D.; Pentyala, S.K.; Yuan, H.; Ji, S.; Mohseni, S.; Linder, R.; Hu, X.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

ChannelNets: Compact and efficient convolutional neural networks via channel-wise convolutions

Advances in Neural Information Processing Systems
2018 | Conference paper
EID:

2-s2.0-85064846150

Part of ISBN:

10495258
Contributors: Gao, H.; Wang, Z.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Deep adversarial learning for multi-modality missing data completion

Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining
2018 | Conference paper
DOI: 10.1145/3219819.3219963
EID:

2-s2.0-85051485343
Contributors: Cai, L.; Wang, Z.; Gao, H.; Shen, D.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Large-scale Exploration of Neuronal Morphologies Using Deep Learning and Augmented Reality

Neuroinformatics
2018 | Journal article
DOI: 10.1007/s12021-018-9361-5
EID:

2-s2.0-85041913663

Part of ISBN:

15392791
Contributors: Li, Z.; Butler, E.; Li, K.; Lu, A.; Ji, S.; Zhang, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Large-scale learnable graph convolutional networks

Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining
2018 | Conference paper
DOI: 10.1145/3219819.3219947
EID:

2-s2.0-85051454703
Contributors: Gao, H.; Wang, Z.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Learning convolutional text representations for visual question answering

SIAM International Conference on Data Mining, SDM 2018
2018 | Conference paper
DOI: 10.1137/1.9781611975321.67
EID:

2-s2.0-85048312434
Contributors: Wang, Z.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Multi-View Missing Data Completion

IEEE Transactions on Knowledge and Data Engineering
2018 | Journal article
DOI: 10.1109/TKDE.2018.2791607
EID:

2-s2.0-85041191108

Part of ISBN:

10414347
Contributors: Zhang, L.; Zhao, Y.; Zhu, Z.; Shen, D.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Neuronal Activities in the Mouse Visual Cortex Predict Patterns of Sensory Stimuli

Neuroinformatics
2018 | Journal article
DOI: 10.1007/s12021-018-9357-1
EID:

2-s2.0-85045150281

Part of ISBN:

15392791
Contributors: Cai, L.; Wu, B.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Smoothed dilated convolutions for improved dense prediction

Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining
2018 | Conference paper
DOI: 10.1145/3219819.3219944
EID:

2-s2.0-85051471451
Contributors: Wang, Z.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Three-dimensional protein shape similarity analysis based on hybrid features

Gene
2018 | Journal article
DOI: 10.1016/j.gene.2018.04.049
EID:

2-s2.0-85046016663

Part of ISBN:

18790038 03781119
Contributors: Li, Z.; Yu, J.; Hu, H.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Voxel deconvolutional networks for 3D brain image labeling

Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining
2018 | Conference paper
DOI: 10.1145/3219819.3219974
EID:

2-s2.0-85051533356
Contributors: Chen, Y.; Shi, M.; Gao, H.; Shen, D.; Cai, L.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

A deep transfer learning approach for improved post-traumatic stress disorder diagnosis

Proceedings - IEEE International Conference on Data Mining, ICDM
2017 | Conference paper
DOI: 10.1109/ICDM.2017.10
EID:

2-s2.0-85043998653

Part of ISBN:

15504786
Contributors: Banerjee, D.; Islam, K.; Mei, G.; Xiao, L.; Zhang, G.; Xu, R.; Ji, S.; Li, J.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Deep convolutional neural networks for detecting secondary structures in protein density maps from cryo-electron microscopy

Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016
2017 | Conference paper
DOI: 10.1109/BIBM.2016.7822490
EID:

2-s2.0-85013308958
Contributors: Li, R.; Si, D.; Zeng, T.; Ji, S.; He, J.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Deep Learning Segmentation of Optical Microscopy Images Improves 3-D Neuron Reconstruction

IEEE Transactions on Medical Imaging
2017 | Journal article
DOI: 10.1109/TMI.2017.2679713
EID:

2-s2.0-85028365655

Part of ISBN:

1558254X 02780062
Contributors: Li, R.; Zeng, T.; Peng, H.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

DeepEM3D: approaching human-level performance on 3D anisotropic EM image segmentation

Bioinformatics (Oxford, England)
2017 | Journal article
DOI: 10.1093/bioinformatics/btx188
EID:

2-s2.0-85044002499

Part of ISBN:

13674811
Contributors: Zeng, T.; Wu, B.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Efficient and invariant convolutional neural networks for dense prediction

Proceedings - IEEE International Conference on Data Mining, ICDM
2017 | Conference paper
DOI: 10.1109/ICDM.2017.107
EID:

2-s2.0-85043989808

Part of ISBN:

15504786
Contributors: Gao, H.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Feature selection based on structured sparsity: a comprehensive study

IEEE Transactions on Neural Networks and Learning Systems
2017 | Journal article
DOI: 10.1109/TNNLS.2016.2551724
EID:

2-s2.0-84964546292

Part of ISBN:

21622388 2162237X
Contributors: Gui, J.; Sun, Z.; Ji, S.; Tao, D.; Tan, T.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

IDM 2017:Workshop on interpretable data mining-bridging the gap between shallow and deep models

International Conference on Information and Knowledge Management, Proceedings
2017 | Conference paper
DOI: 10.1145/3132847.3133198
EID:

2-s2.0-85037350865
Contributors: Hu, X.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Multi-modality disease modeling via collective deep matrix factorization

Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining
2017 | Conference paper
DOI: 10.1145/3097983.3098164
EID:

2-s2.0-85029101188
Contributors: Wang, Q.; Sun, M.; Zhan, L.; Thompson, P.; Ji, S.; Zhou, J.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Recurrent encoder-decoder networks for time-varying dense prediction

Proceedings - IEEE International Conference on Data Mining, ICDM
2017 | Conference paper
DOI: 10.1109/ICDM.2017.156
EID:

2-s2.0-85043993030

Part of ISBN:

15504786
Contributors: Zeng, T.; Wu, B.; Zhou, J.; Davidson, I.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Residual Deconvolutional Networks for Brain Electron Microscopy Image Segmentation

IEEE Transactions on Medical Imaging
2017 | Journal article
DOI: 10.1109/TMI.2016.2613019
EID:

2-s2.0-85012247411

Part of ISBN:

1558254X 02780062
Contributors: Fakhry, A.; Zeng, T.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Collaborative multi-view denoising

Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining
2016 | Conference paper
DOI: 10.1145/2939672.2939811
EID:

2-s2.0-84985032691
Contributors: Zhang, L.; Wang, S.; Zhang, X.; Wang, Y.; Li, B.; Shen, D.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Deep convolutional neural networks for multi-instance multi-task learning

Proceedings - IEEE International Conference on Data Mining, ICDM
2016 | Conference paper
DOI: 10.1109/ICDM.2015.92
EID:

2-s2.0-84963620366

Part of ISBN:

15504786
Contributors: Zeng, T.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Deep models for brain em image segmentation: Novel insights and improved performance

Bioinformatics
2016 | Journal article
DOI: 10.1093/bioinformatics/btw165
EID:

2-s2.0-84991439219

Part of ISBN:

14602059 13674803
Contributors: Fakhry, A.; Peng, H.; Ji, S.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Multi-Label Dimensionality Reduction

Multi-Label Dimensionality Reduction
2016 | Book
EID:

2-s2.0-85052483290
Contributors: Sun, L.; Ji, S.; Ye, J.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Multi-task feature interaction learning

Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining
2016 | Conference paper
DOI: 10.1145/2939672.2939834
EID:

2-s2.0-84984940227
Contributors: Lin, K.; Xu, J.; Baytas, I.M.; Ji, S.; Zhou, J.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier

Parallel lasso screening for big data optimization

Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining
2016 | Conference paper
DOI: 10.1145/2939672.2939859
EID:

2-s2.0-84985041112
Contributors: Li, Q.; Qiu, S.; Ji, S.; Thompson, P.M.; Ye, J.; Wang, J.
Source: Self-asserted source
Shuiwang Ji via Scopus - Elsevier
Items per page:
Page 1 of 3

Peer review (5 reviews for 3 publications/grants)

Review activity for Nature machine intelligence. (2)
Review activity for Nature methods. (2)
Review activity for Scientific data. (1)
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