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SciProfiles: 362433
ResearcherID: C-7843-2017

Keywords

Genome, Organelle genome, Phylogeny, Population, Sex determination

Countries

China

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Employment (4)

Chinese Academy of Agricultural Sciences Agricultural Genomes Institute at Shenzhen: Shenzhen, Guangdong, CN

2019-11-01 to present | PI
Employment
Source: Self-asserted source
Zhiqiang Wu

Colorado State University: Fort Collins, CO, US

2018-01-01 to 2019-12-31 | postdoc (Biology)
Employment
Source: Self-asserted source
Zhiqiang Wu

Iowa State University: Ames, IA, US

2016-05-01 to 2017-12-31 | Postdoc (EEOB)
Employment
Source: Self-asserted source
Zhiqiang Wu

Colorado State University: Fort Collins, CO, US

2014-05-01 to 2016-04-30 | postdoc (Bioloby)
Employment
Source: Self-asserted source
Zhiqiang Wu

Education and qualifications (1)

Chinese Academy of Sciences: Beijing, Beijing, CN

2006-09-01 to 2011-07-11 | PhD (institute of botany)
Education
Source: Self-asserted source
Zhiqiang Wu

Works (50 of 75)

Items per page:
Page 1 of 2

Metabolomic and transcriptomic analyses provide insight into the variation of floral scent and molecular regulation in different cultivars and flower development of Curcuma alismatifolia

Horticulture Research
2025-02-27 | Journal article
DOI: 10.1093/hr/uhae348
Contributors: Chao Song; Jingpu Tian; Dejin Xie; Shengnan Lin; Yingxue Yang; Xiaoni Zhang; Xuezhu Liao; Zhiqiang Wu
Source: check_circle
Crossref

Disruption of recombination machinery alters the mutational landscape in plant organellar genomes

G3: Genes, Genomes, Genetics
2025-02-13 | Journal article
DOI: 10.1093/g3journal/jkaf029
Contributors: Gus Waneka; Amanda K Broz; Forrest Wold-McGimsey; Yi Zou; Zhiqiang Wu; Daniel B Sloan; P Morrell
Source: check_circle
Crossref

The evolutionarily diverged single-stranded DNA-binding proteins SSB1/SSB2 differentially affect the replication, recombination and mutation of organellar genomes in Arabidopsis thaliana

Plant Diversity
2025-01 | Journal article
DOI: 10.1016/j.pld.2024.11.001
Contributors: Weidong Zhu; Jie Qian; Yingke Hou; Luke R. Tembrock; Liyun Nie; Yi-Feng Hsu; Yong Xiang; Yi Zou; Zhiqiang Wu
Source: check_circle
Crossref

Chromosome-level and haplotype-resolved genome assembly of Bougainvillea glabra

Scientific Data
2025-01-18 | Journal article
DOI: 10.1038/s41597-024-04333-6
Contributors: Lan Lan; Haiyan Li; Shisong Xu; Yueting Xu; Qingyun Leng; Linbi Zhang; Linqiao Wu; Junmei Yin; Zhiqiang Wu; Junhai Niu
Source: check_circle
Crossref

Flipping the switch on some of the slowest mutating genomes: Direct measurements of plant mitochondrial and plastid mutation rates inmsh1mutants

2025-01-12 | Preprint
DOI: 10.1101/2025.01.08.631957
Contributors: Amanda K. Broz; Mychaela M. Hodous; Yi Zou; Patricia C. Vail; Zhiqiang Wu; Daniel B. Sloan
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Crossref

The Identification of Auxin Response Factors and Expression Analyses of Different Floral Development Stages in Roses

Genes
2025-01-01 | Journal article
DOI: 10.3390/genes16010041
Contributors: Rui Huang; Xiaoni Zhang; Kaiqing Luo; Luke R. Tembrock; Sen Li; Zhiqiang Wu
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

De novo genome assemblies of two cryptodiran turtles with ZZ/ZW and XX/XY sex chromosomes provide insights into patterns of genome reshuffling and uncover novel 3D genome folding in amniotes

Genome Research
2024-10 | Journal article
DOI: 10.1101/gr.279443.124
Contributors: Basanta Bista; Laura González-Rodelas; Lucía Álvarez-González; Zhi-qiang Wu; Eugenia E. Montiel; Ling Sze Lee; Daleen B. Badenhorst; Srihari Radhakrishnan; Robert Literman; Beatriz Navarro-Dominguez et al.
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Crossref

Accumulation of Large Lineage-Specific Repeats Coincides with Sequence Acceleration and Structural Rearrangement in Plantago Plastomes

Genome Biology and Evolution
2024-08-05 | Journal article
DOI: 10.1093/gbe/evae177
Contributors: Jie Wang; Shenglong Kan; Jiali Kong; Liyun Nie; Weishu Fan; Yonglin Ren; Wayne Reeve; Jeffrey P Mower; Zhiqiang Wu; Liliana Milani
Source: check_circle
Crossref

Mitochondrial genome editing of WA352 via mitoTALENs restore fertility in cytoplasmic male sterile rice

Plant Biotechnology Journal
2024-07 | Journal article
DOI: 10.1111/pbi.14315
Contributors: Jiawei Zhou; Liyun Nie; Shuo Zhang; Hailiang Mao; Shin-ichi Arimura; Shuangxia Jin; Zhiqiang Wu
Source: check_circle
Crossref

Plant organellar genomes: much done, much more to do

Trends in Plant Science
2024-07 | Journal article
DOI: 10.1016/j.tplants.2023.12.014
Contributors: Jie Wang; Shenglong Kan; Xuezhu Liao; Jiawei Zhou; Luke R. Tembrock; Henry Daniell; Shuangxia Jin; Zhiqiang Wu
Source: check_circle
Crossref

Relationships within Bolbitis sinensis Species Complex Using RAD Sequencing

Plants
2024-07-20 | Journal article
DOI: 10.3390/plants13141987
Contributors: Liyun Nie; Yuhan Fang; Zengqiang Xia; Xueying Wei; Zhiqiang Wu; Yuehong Yan; Faguo Wang
Source: check_circle
Crossref
grade
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Resolving Relationships of Bolbitis sinensis Species Complex Using RAD Sequencing

2024-06-03 | Preprint
DOI: 10.20944/preprints202406.0083.v1
Contributors: Liyun Nie; Yuhan Fang; Zengqiang Xia; Xueying Wei; Zhiqiang Wu; Yuehong Yan; Faguo Wang
Source: check_circle
Crossref
grade
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Exploring Plastomic Resources in Sempervivum (Crassulaceae): Implications for Phylogenetics

Genes
2024-03-30 | Journal article
DOI: 10.3390/genes15040441
Contributors: Junhu Kan; Shuo Zhang; Zhiqiang Wu; De Bi
Source: check_circle
Crossref
grade
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PMAT: an efficient plant mitogenome assembly toolkit using low-coverage HiFi sequencing data

Horticulture Research
2024-03-07 | Journal article
DOI: 10.1093/hr/uhae023
Contributors: Changwei Bi; Fei Shen; Fuchuan Han; Yanshu Qu; Jing Hou; Kewang Xu; Li-an Xu; Wenchuang He; Zhiqiang Wu; Tongming Yin
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Crossref

Cytonuclear Interactions and Subgenome Dominance Shape the Evolution of Organelle-Targeted Genes in the Brassica Triangle of U

Molecular Biology and Evolution
2024-03-01 | Journal article
DOI: 10.1093/molbev/msae043
Contributors: Shenglong Kan; Xuezhu Liao; Lan Lan; Jiali Kong; Jie Wang; Liyun Nie; Jun Zou; Hong An; Zhiqiang Wu; Patricia Wittkopp
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Crossref

Comparative Analyses of Acacia Plastomes to Detect Mutational Hotspots and Barcode Sites for the Identification of Important Timber Species

Forests
2024-02-05 | Journal article
DOI: 10.3390/f15020306
Contributors: Weixiong Li; Yongyao Li; Luke R. Tembrock; Zhiqiang Wu; Xuezhu Liao; Shuo Zhang
Source: check_circle
Crossref
grade
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Association Analysis Provides Insights into Plant Mitonuclear Interactions

Molecular Biology and Evolution
2024-02-01 | Journal article
DOI: 10.1093/molbev/msae028
Contributors: Qun Lian; Shuai Li; Shenglong Kan; Xuezhu Liao; Sanwen Huang; Daniel B Sloan; Zhiqiang Wu; Weiwei Zhai
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Crossref

Transcriptome Profiling Reveals the Gene Network Responding to Low Nitrogen Stress in Wheat

Plants
2024-01-26 | Journal article
DOI: 10.3390/plants13030371
Contributors: Yiwei Wang; Pengfeng Li; Yiwang Zhu; Yuping Shang; Zhiqiang Wu; Yongfu Tao; Hongru Wang; Dongxi Li; Cuijun Zhang
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Crossref
grade
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Development and Optimization of a Rapid In Vitro Micropropagation System for the Perennial Vegetable Night Lily, Hemerocallis citrina Baroni

Agronomy
2024-01-24 | Journal article
DOI: 10.3390/agronomy14020244
Contributors: Gaoya Zuo; Ke Li; Yining Guo; Xiaorun Niu; Lijin Yin; Zhiqiang Wu; Xiaomin Zhang; Xiaojing Cheng; Jie Yu; Shaowen Zheng et al.
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Crossref
grade
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Tracing the Maternal Line in Glacial–Interglacial Migrations of Populus tremuloides: Finding Trees for Future Sustainable Forests by Searching in the Past

Sustainability
2024-01-23 | Journal article
DOI: 10.3390/su16030949
Contributors: Luke R. Tembrock; Frida A. Zink; Guozhe Zhang; Andrea Schuhmann; Cuihua Gu; Zhiqiang Wu
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Crossref
grade
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Comprehensive Analysis of the Complete Mitochondrial Genome of Rehmannia chingii: An Autotrophic Species in the Orobanchaceae Family

Genes
2024-01-15 | Journal article
DOI: 10.3390/genes15010098
Contributors: Ying Han; Yan-Lei Feng; Jie Wang; Shan-Shan Zhu; Xin-Jie Jin; Zhi-Qiang Wu; Yong-Hua Zhang
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Crossref
grade
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The haplotype-resolved telomere-to-telomere carnation (Dianthus caryophyllus) genome reveals the correlation between genome architecture and gene expression

Horticulture Research
2024-01-10 | Journal article
DOI: 10.1093/hr/uhad244
Contributors: Lan Lan; Luhong Leng; Weichao Liu; Yonglin Ren; Wayne Reeve; Xiaopeng Fu; Zhiqiang Wu; Xiaoni Zhang
Source: check_circle
Crossref

The telomere-to-telomere (T2T) genome provides insights into the evolution of specialized centromere sequences in sandalwood

GigaScience
2024-01-02 | Journal article
DOI: 10.1093/gigascience/giae096
Contributors: Dan Peng; Zhou Hong; Shenglong Kan; Zhiqiang Wu; Xuezhu Liao
Source: check_circle
Crossref

Multi-integrated genomic data for Passiflora foetida provides insights into genome size evolution and floral development in Passiflora

Molecular Horticulture
2023-12-18 | Journal article
DOI: 10.1186/s43897-023-00076-x
Contributors: Yi Zou; Jie Wang; Dan Peng; Xiaoni Zhang; Luke R. Tembrock; Jinliang Yang; Jianli Zhao; Hong Liao; Zhiqiang Wu
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Crossref

Genomic analyses reveal natural selection on reproduction related genes between two closely related Populus (Salicaceae) species

Journal of Systematics and Evolution
2023-09 | Journal article
DOI: 10.1111/jse.12911
Contributors: Yang Tian; Shu‐Yu Liu; Pär K. Ingvarsson; Dan‐Dan Zhao; Li Wang; Baoerjiang Abuduhamiti; Jin‐Feng Cai; Zhi‐Qiang Wu; Jian‐Guo Zhang; Zhao‐Shan Wang
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Crossref

Multi-integrated genomic data for Passiflora foetida provides insights into genome size evolution and floral development in Passiflora

2023-09-27 | Preprint
DOI: 10.22541/au.169581651.11331667/v1
Contributors: Yi Zou; Jie Wang; Dan Peng; Xiaoni Zhang; Luke Tembrock; Jinliang Yang; Jianli Zhao; Hong Liao; Zhiqiang Wu
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Crossref

Comparative Plastomes of <i>Curcuma alismatifolia</i> (Zingiberaceae) Reveal Diversified Patterns among 56 Different Cut-Flower Cultivars

Genes
2023-08 | Journal article | Author
DOI: 10.3390/genes14091743
Contributors: Jie Wang; Xuezhu Liao; Yongyao Li; Yuanjun Ye; Guoming Xing; Kan Sheng-Long; Liyun Nie; Sen Li; Luke Tembrock; Zhiqiang Wu
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Multidisciplinary Digital Publishing Institute

Author Correction: Chromosome-level genome assemblies from two sandalwood species provide insights into the evolution of the Santalales

Communications Biology
2023-06-28 | Journal article
DOI: 10.1038/s42003-023-05062-z
Contributors: Zhou Hong; Dan Peng; Luke R. Tembrock; Xuezhu Liao; Daping Xu; Xiaojin Liu; Zhiqiang Wu
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Crossref

Chromosome-level genome assemblies from two sandalwood species provide insights into the evolution of the Santalales

Communications Biology
2023-06-01 | Journal article
DOI: 10.1038/s42003-023-04980-2
Contributors: Zhou Hong; Dan Peng; Luke R. Tembrock; Xuezhu Liao; Daping Xu; Xiaojin Liu; Zhiqiang Wu
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Crossref

Genome-Wide Identification of the MYB and bHLH Families in Carnations and Expression Analysis at Different Floral Development Stages

International Journal of Molecular Sciences
2023-05-30 | Journal article
DOI: 10.3390/ijms24119499
Contributors: Luhong Leng; Xiaoni Zhang; Weichao Liu; Zhiqiang Wu
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Crossref
grade
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The pan-plastome of tartary buckwheat (fagopyrum tataricum): key insights into genetic diversity and the history of lineage divergence

BMC Plant Biology
2023-04-24 | Journal article
DOI: 10.1186/s12870-023-04218-7
Part of ISSN: 1471-2229
Contributors: Jiawei Zhou; Wenchuang He; Jie Wang; Xuezhu Liao; Kunli Xiang; Mingchuan Ma; Zhang Liu; Yongyao Li; Luke R. Tembrock; Zhiqiang Wu et al.
Source: Self-asserted source
Zhiqiang Wu

A Genomic Quantitative Study on the Contribution of the Ancestral-State Bases Relative to Derived Bases in the Divergence and Local Adaptation of <i>Populus davidiana</i>

Genes
2023-03 | Journal article | Author
DOI: 10.3390/genes14040821
Contributors: Dandan Zhao; Jianguo Zhang; Nan Hui; Li Wang; Yang Tian; Wanning Ni; Jinhua Long; Li Jiang; Yi Li; Songfeng Diao et al.
Source: check_circle
Multidisciplinary Digital Publishing Institute

Mutational meltdown or controlled chain reaction: The dynamics of rapid plastome evolution in the hyperdiversity of Poaceae

Journal of Systematics and Evolution
2023-03 | Journal article
DOI: 10.1111/jse.12854
Contributors: Jie Wang; Gao‐Fei Fu; Luke R. Tembrock; Xue‐Zhu Liao; Song Ge; Zhi‐Qiang Wu
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Crossref

Transcriptomic thermal plasticity underlying gonadal development in a turtle with ZZ/ZW sex chromosomes despite canalized genotypic sex determination

Ecology and Evolution
2023-02 | Journal article
DOI: 10.1002/ece3.9854
Contributors: Thea B. Gessler; Zhiqiang Wu; Nicole Valenzuela
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Crossref

Variation in mitogenome structural conformation in wild and cultivated lineages of sorghum corresponds with domestication history and plastome evolution

BMC Plant Biology
2023-02-13 | Journal article
DOI: 10.1186/s12870-023-04104-2
Part of ISSN: 1471-2229
Contributors: Shuo Zhang; Jie Wang; Wenchuang He; Shenglong Kan; Xuezhu Liao; David R. Jordan; Emma S. Mace; Yongfu Tao; Alan W. Cruickshank; Robert Klein et al.
Source: Self-asserted source
Zhiqiang Wu

Master graph: an essential integrated assembly model for the plant mitogenome based on a graph-based framework

Briefings in Bioinformatics
2023-01-19 | Journal article
DOI: 10.1093/bib/bbac522
Contributors: Wenchuang He; Kunli Xiang; Caijin Chen; Jie Wang; Zhiqiang Wu
Source: check_circle
Crossref

Long‐read sequencing characterizes mitochondrial and plastid genome variants in Arabidopsis msh1 mutants

The Plant Journal
2022-11 | Journal article
DOI: 10.1111/tpj.15976
Contributors: Yi Zou; Weidong Zhu; Daniel B. Sloan; Zhiqiang Wu
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Crossref

Evaluation of Intracellular Gene Transfers from Plastome to Nuclear Genome across Progressively Improved Assemblies for Arabidopsis thaliana and Oryza sativa

Genes
2022-09-09 | Journal article
DOI: 10.3390/genes13091620
Contributors: Haoqi Wang; Xuezhu Liao; Luke R. Tembrock; Zuoren Yang; Zhiqiang Wu
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Crossref
grade
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Comparative Analyses of 35 Complete Chloroplast Genomes from the Genus Dalbergia (Fabaceae) and the Identification of DNA Barcodes for Tracking Illegal Logging and Counterfeit Rosewood

Forests
2022-04-16 | Journal article
DOI: 10.3390/f13040626
Contributors: Zhou Hong; Wenchuang He; Xiaojing Liu; Luke R. Tembrock; Zhiqiang Wu; Daping Xu; Xuezhu Liao
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Long-read sequencing characterizes mitochondrial and plastid genome variants in Arabidopsis msh1 mutants

2022-03-02 | Preprint
DOI: 10.1101/2022.02.28.481893
Contributors: Yi Zou; Weidong Zhu; Daniel B. Sloan; Zhiqiang Wu
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Crossref

Genomic architectural variation of plant mitochondria—A review of multichromosomal structuring

Journal of Systematics and Evolution
2022-01 | Journal article
DOI: 10.1111/jse.12655
Contributors: Zhi‐Qiang Wu; Xue‐Zhu Liao; Xiao‐Ni Zhang; Luke R. Tembrock; Amanda Broz
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Crossref

Comparative Analyses of 35 Complete Chloroplast Genomes from the Genus Dalbergia (Fabacaeae) and the Identification of DNA Barcodes for Tracking Illegal Logging and Counterfeit Rosewood

2021-05-26 | Preprint
DOI: 10.21203/rs.3.rs-271391/v1
Contributors: Zhou Hong; Dan Peng; Wenchuang He; Ningnan Zhang; Zengjiang Yang; Luke R Tembrock; Zhiqiang Wu; Xuezhu Liao; Daping Xu
Source: check_circle
Crossref

Detecting de novo mitochondrial mutations in angiosperms with highly divergent evolutionary rates

Genetics
2021-05-17 | Journal article
DOI: 10.1093/genetics/iyab039
Contributors: Amanda K Broz; Gus Waneka; Zhiqiang Wu; Matheus Fernandes Gyorfy; Daniel B Sloan; J Sekelsky
Source: check_circle
Crossref

Detecting de novo mitochondrial mutations in angiosperms with highly divergent evolutionary rates

2020-12-10 | Other
DOI: 10.1101/2020.12.09.418582
Contributors: Amanda K. Broz; Gus Waneka; Zhiqiang Wu; Matheus Fernandes Gyorfy; Daniel B. Sloan
Source: check_circle
Crossref

Karyotypic Evolution of Sauropsid Vertebrates Illuminated by Optical and Physical Mapping of the Painted Turtle and Slider Turtle Genomes

Genes
2020-08-12 | Journal article
DOI: 10.3390/genes11080928
Contributors: Ling Sze Lee; Beatriz M. Navarro-Domínguez; Zhiqiang Wu; Eugenia E. Montiel; Daleen Badenhorst; Basanta Bista; Thea B. Gessler; Nicole Valenzuela
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Crossref
grade
Preferred source (of 2)‎

MSH1 is required for maintenance of the low mutation rates in plant mitochondrial and plastid genomes

Proceedings of the National Academy of Sciences
2020-07-14 | Journal article
DOI: 10.1073/pnas.2001998117
Contributors: Zhiqiang Wu; Gus Waneka; Amanda K. Broz; Connor R. King; Daniel B. Sloan
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Crossref

The Tempo and Mode of Angiosperm Mitochondrial Genome Divergence Inferred from Intraspecific Variation in Arabidopsis thaliana

G3 Genes|Genomes|Genetics
2020-03-01 | Journal article
DOI: 10.1534/g3.119.401023
Contributors: Zhiqiang Wu; Gus Waneka; Daniel B Sloan
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Crossref

Recombination and intraspecific polymorphism for the presence and absence of entire chromosomes in mitochondrial genomes

Heredity
2019-05-24 | Journal article
DOI: 10.1038/s41437-018-0153-3
Contributors: Zhiqiang Wu; Daniel B. Sloan
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Crossref

Sex‐biased gene expression in flowers, but not leaves, reveals secondary sexual dimorphism in Populus balsamifera

New Phytologist
2019-01 | Journal article
DOI: 10.1111/nph.15421
Contributors: Brian J. Sanderson; Li Wang; Peter Tiffin; Zhiqiang Wu; Matthew S. Olson
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Crossref

Cytonuclear integration and co-evolution

Nature Reviews Genetics
2018-10-17 | Journal article
DOI: 10.1038/s41576-018-0035-9
Contributors: Daniel B. Sloan; Jessica M. Warren; Alissa M. Williams; Zhiqiang Wu; Salah E. Abdel-Ghany; Adam J. Chicco; Justin C. Havird
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Crossref
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Peer review (2 reviews for 2 publications/grants)

Review activity for BMC plant biology (1)
Review activity for Scientific data. (1)
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