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Employment (5)

Cold Spring Harbor Laboratory: Cold Spring Harbor, NY, US

2021-01-04 to present | Assistant Professor
Employment
Source: Self-asserted source
Paolo Cifani

Memorial Sloan-Kettering Cancer Center: New York, NY, US

2014-02-03 to present | Postdoctoral Research Fellow (Molecular pharmacology)
Employment
Source: Self-asserted source
Paolo Cifani

Lunds Universitet: Lund, SE

2013-06-01 to 2014-01-31 | Researcher (Immunteknologi)
Employment
Source: Self-asserted source
Paolo Cifani

Lunds Universitet: Lund, SE

2008-03 to 2008-11 | Project worker (Immunteknologi)
Employment
Source: Self-asserted source
Paolo Cifani

AB Analitica: Padova, Veneto, IT

2006 to 2008-03 | Researcher
Employment
Source: Self-asserted source
Paolo Cifani

Education and qualifications (3)

Lunds Universitet Tekniska Högskola: Lund, SE

2008 to 2013-05 | PhD in Immunotechnology - Proteomics (Immunteknologi)
Education
Source: Self-asserted source
Paolo Cifani

Università degli studi di Padova Facoltà di Scienze matematiche fisiche naturali: Padova, Veneto, IT

2003 to 2006-03 | M.Sc., Industrial Biotechnology (Biologia)
Education
Source: Self-asserted source
Paolo Cifani

Università degli studi di Padova Facoltà di Scienze matematiche fisiche naturali: Padova, Veneto, IT

2000 to 2003 | B.Sc., Biotechnology (Biologia)
Education
Source: Self-asserted source
Paolo Cifani

Funding (1)

Chemical proteomics of aberrant survival of acute myeloid leukemia for improved targeted therapy

2014-08 to 2016-07 | Award
American-Italian Cancer Foundation (NY, NY, US)
Source: Self-asserted source
Paolo Cifani

Works (34)

Integrative Proteogenomics Using ProteomeGenerator2

Journal of Proteome Research
2023-08-04 | Journal article
Contributors: Nathaniel Kwok; Zita Aretz; Sumiko Takao; Zheng Ser; Paolo Cifani; Alex Kentsis
Source: check_circle
Crossref

Integrative proteogenomics using ProteomeGenerator2

2023-01-04 | Preprint
Contributors: Nathaniel Kwok; Zita Aretz; Sumiko Takao; Zheng Ser; Paolo Cifani; Alex Kentsis
Source: check_circle
Crossref

Translesion DNA synthesis polymerase κ is essential to a carcinogen-induced nucleolar stress response

2022-10-27 | Preprint
Contributors: Shilpi Paul; Abbey Rebok; Paolo Cifani; Anirban Paul; Darryl Pappin; Tony T. Huang; Thomas E. Spratt
Source: check_circle
Crossref

Quantitative Cell Proteomic Atlas: Pathway-Scale Targeted Mass Spectrometry for High-Resolution Functional Profiling of Cell Signaling

Journal of Proteome Research
2022-10-07 | Journal article
Contributors: Paolo Cifani; Alex Kentsis
Source: check_circle
Crossref

Quantitative Cell Proteomic Atlas: Pathway-scale targeted mass spectrometry for high-resolution functional profiling of cell signaling

2022-04-14 | Preprint
Contributors: Paolo Cifani; Alex Kentsis
Source: check_circle
Crossref

Discovery of Protein Modifications Using Differential Tandem Mass Spectrometry Proteomics

Journal of Proteome Research
2021-04-02 | Journal article
Contributors: Paolo Cifani; Zhi Li; Danmeng Luo; Mark Grivainis; Andrew M. Intlekofer; David Fenyö; Alex Kentsis
Source: check_circle
Crossref

Optimized Cross-Linking Mass Spectrometry for in Situ Interaction Proteomics

Journal of Proteome Research
2019-06-07 | Journal article
Contributors: Zheng Ser; Paolo Cifani; Alex Kentsis
Source: check_circle
Crossref

Targeting the CALR interactome in myeloproliferative neoplasms

JCI Insight
2018-11-15 | Journal article
Contributors: Elodie Pronier; Paolo Cifani; Tiffany R. Merlinsky; Katharine Barr Berman; Amritha Varshini Hanasoge Somasundara; Raajit K. Rampal; John LaCava; Karen E. Wei; Friederike Pastore; Jesper L.V. Maag et al.
Source: check_circle
Crossref

Optimized cross-linking mass spectrometry for in situ interaction proteomics

2018-08 | Other
Contributors: Zheng Ser; Paolo Cifani; Alex Kentsis
Source: Self-asserted source
Paolo Cifani via Crossref Metadata Search

A Non-catalytic Function of SETD1A Regulates Cyclin K and the DNA Damage Response.

Cell
2018-02 | Journal article
Contributors: Hoshii T; Cifani P; Feng Z; Huang CH; Koche R; Chen CW; Delaney CD; Lowe SW; Kentsis A; Armstrong SA
Source: Self-asserted source
Paolo Cifani via Europe PubMed Central

MEF2C Phosphorylation Is Required for Chemotherapy Resistance in Acute Myeloid Leukemia.

Cancer discovery
2018-02 | Journal article
Contributors: Brown FC; Still E; Koche RP; Yim CY; Takao S; Cifani P; Reed C; Gunasekera S; Ficarro SB; Romanienko P et al.
Source: Self-asserted source
Paolo Cifani via Europe PubMed Central

ProteomeGenerator: A framework for comprehensive proteomics based on de novo transcriptome assembly and high-accuracy peptide mass spectral matching

2017 | Other
Contributors: Paolo Cifani; Avantika Dhabaria; Akihide Yoshimi; Omar Abdel-Wahab; John T Poirier; Alex Kentsis
Source: Self-asserted source
Paolo Cifani via Crossref Metadata Search

High sensitivity quantitative proteomics using automated multidimensional nano-flow chromatography and accumulated ion monitoring on quadrupole-Orbitrap-linear ion trap mass spectrometer.

Molecular & cellular proteomics : MCP
2017-08 | Journal article
Source: Self-asserted source
Paolo Cifani via Europe PubMed Central

High sensitivity quantitative proteomics using accumulated ion monitoring and automated multidimensional nano-flow chromatography

2017-04 | Other
Contributors: Paolo Cifani; Alex Kentsis
Source: Self-asserted source
Paolo Cifani via Crossref Metadata Search

ProteoModlR for functional proteomic analysis.

2017-03 | Journal article
Contributors: Cifani P; Shakiba M; Chhangawala S; Kentsis A
Source: Self-asserted source
Paolo Cifani via Europe PubMed Central

Genomics of primary chemoresistance and remission induction failure in paediatric and adult acute myeloid leukaemia.

2017-01 | Journal article
Contributors: Brown FC; Cifani P; Drill E; He J; Still E; Zhong S; Balasubramanian S; Pavlick D; Yilmazel B; Knapp KM et al.
Source: Self-asserted source
Paolo Cifani via Europe PubMed Central

Towards comprehensive and quantitative proteomics for diagnosis and therapy of human disease.

2017-01 | Journal article
Contributors: Cifani P; Kentsis A
Source: Self-asserted source
Paolo Cifani via Europe PubMed Central

Proteomic analysis of breast tumors confirms the mRNA intrinsic molecular subtypes using different classifiers: a large-scale analysis of fresh frozen tissue samples.

2016 | Journal article
Contributors: Waldemarson S; Kurbasic E; Krogh M; Cifani P; Berggård T; Borg Å; James P
Source: Self-asserted source
Paolo Cifani via Europe PubMed Central

Towards comprehensive and quantitative proteomics for diagnosis and therapy of human disease

2016-08 | Other
Contributors: Paolo Cifani; Alex Kentsis
Source: Self-asserted source
Paolo Cifani via Crossref Metadata Search

ProteoMdlR

2015-12 | Research tool
Source: Self-asserted source
Paolo Cifani

Native Proteome Extraction Protocol using poloxamer-based adaptive focused sonication

Protocol Exchange
2015-09 | Journal article
Part of ISSN: 2043-0116
Contributors: Kentsis ResearchGroup; Avantika Dhabaria; Paolo Cifani; Casie Reed; Alex Kentsis
Source: Self-asserted source
Paolo Cifani via Crossref Metadata Search

A High-Efficiency Cellular Extraction System for Biological Proteomics.

J Proteome Res.
2015-08-07 | Journal article
Source: Self-asserted source
Paolo Cifani

Molecular Portrait of Breast-Cancer-Derived Cell Lines Reveals Poor Similarity with Tumors

Journal of Proteome Research
2015-07-02 | Journal article
Source: Self-asserted source
Paolo Cifani

Fabrication of Nanoelectrospray Emitters for LC-MS

Protocol Exchange
2015-06-09 | Journal article
Part of ISSN: 2043-0116
Contributors: Kentsis ResearchGroup; Paolo Cifani; Avantika Dhabaria; Alex Kentsis
Source: Self-asserted source
Paolo Cifani via Crossref Metadata Search

Fabrication of Capillary Columns with Integrated Frits for Mass Spectrometry

Protocol Exchange
2015-06-02 | Journal article
Part of ISSN: 2043-0116
Contributors: Kentsis ResearchGroup; Avantika Dhabaria; Paolo Cifani; Alex Kentsis
Source: Self-asserted source
Paolo Cifani via Crossref Metadata Search

Fabrication of Nanoelectrospray Emitters for LC-MS

Protocol Exchange
2015-05 | Journal article
Part of ISSN: 2043-0116
Contributors: Paolo Cifani; Paolo Cifani; Avantika Dhabaria; Alex Kentsis
Source: Self-asserted source
Paolo Cifani via Crossref Metadata Search

Fabrication of Nanoelectrospray Emitters for LC-MS

Protocol Exchange
2015-05 | Journal article
Part of ISSN: 2043-0116
Contributors: Paolo Cifani; Paolo Cifani; Avantika Dhabaria; Alex Kentsis
Source: Self-asserted source
Paolo Cifani via Crossref Metadata Search

Pathway-centric analysis of the DNA damage response to chemotherapeutic agents in two breast cell lines

EuPA Open Proteomics
2015-05-27 | Journal article
DOI:

10.1016/j.euprot.2015.05.002

Source: Self-asserted source
Paolo Cifani

Building a map of the breast cancer proteome

2014 | Dissertation or Thesis
ISBN:

978-91-7473-529-1

Source: Self-asserted source
Paolo Cifani

Quantitative analysis of a phosphoproteome readily altered by the protein kinase CK2 inhibitor quinalizarin in HEK-293T cells

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
2014-09 | Journal article
DOI:

10.1016/j.bbapap.2014.09.017

Contributors: Cinzia Franchin; Luca Cesaro; Mauro Salvi; Renato Millioni; Elisabetta Iori; Paolo Cifani; Peter James; Giorgio Arrigoni; Lorenzo Pinna
Source: Self-asserted source
Paolo Cifani via Crossref Metadata Search

Critical Comparison of Multidimensional Separation Methods for Increasing Protein Expression Coverage

J. Proteome Res.
2012-05-04 | Journal article
DOI:

10.1021/pr201257y

Contributors: Linn Antberg; Paolo Cifani; Marianne Sandin; Fredrik Levander; Peter James
Source: Self-asserted source
Paolo Cifani via Crossref Metadata Search

Multimodel Pathway Enrichment Methods for Functional Evaluation of Expression Regulation

J. Proteome Res.
2012-05-04 | Journal article
DOI:

10.1021/pr300038b

Contributors: Ufuk Kirik; Paolo Cifani; Ann-Sofie Albrekt; Malin Lindstedt; Anders Heyden; Fredrik Levander
Source: Self-asserted source
Paolo Cifani via Crossref Metadata Search

Relative Quantification of Membrane Proteins in Wild-Type and Prion Protein (PrP)-Knockout Cerebellar Granule Neurons

J. Proteome Res.
2012-02-03 | Journal article
DOI:

10.1021/pr200759m

Contributors: Roberto Stella; Paolo Cifani; Caterina Peggion; Karin Hansson; Cristian Lazzari; Maria Bendz; Fredrik Levander; Maria Catia Sorgato; Alessandro Bertoli; Peter James
Source: Self-asserted source
Paolo Cifani via Crossref Metadata Search

Hunting for Protein Markers of Hypoxia by Combining Plasma Membrane Enrichment with a New Approach to Membrane Protein Analysis

J. Proteome Res.
2011-04 | Journal article
DOI:

10.1021/pr100982j

Contributors: Paolo Cifani; Maria Bendz; Kristofer Wårell; Karin Hansson; Fredrik Levander; Marianne Sandin; Morten Krogh; Marie Ovenberger; Erik Fredlund; Marica Vaapil et al.
Source: Self-asserted source
Paolo Cifani via Crossref Metadata Search

Peer review (2 reviews for 2 publications/grants)

Review activity for iScience. (1)
Review activity for Journal of proteome research. (1)