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Employment (1)

IBM Research - Almaden: San Jose, California, US

2015-07-27 to present
Employment
Source: Self-asserted source
Kristen L. Beck

Works (18)

Development and evaluation of statistical and artificial intelligence approaches with microbial shotgun metagenomics data as an untargeted screening tool for use in food production

mSystems
2024-11-19 | Journal article
Contributors: Kristen L. Beck; Niina Haiminen; Akshay Agarwal; Anna Paola Carrieri; Matthew Madgwick; Jennifer Kelly; Victor Pylro; Ban Kawas; Martin Wiedmann; Erika Ganda et al.
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Commensal or pathogen: computationally vectorizing microbial genomes forde novorisk assessment and virulence feature discovery inKlebsiella pneumoniae

2024-05-13 | Preprint
Contributors: Kristen L. Beck; Akshay Agarwal; Alison Laufer Halpin; L. Clifford McDonald; Susannah L. McKay; Alyssa G. Kent; James H. Kaufman; Vandana Mukherjee; Christopher A. Elkins; Edward Seabolt
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Crossref

Predicting Epitope Candidates for SARS-CoV-2

Viruses
2022-08-21 | Journal article
Contributors: Akshay Agarwal; Kristen L. Beck; Sara Capponi; Mark Kunitomi; Gowri Nayar; Edward Seabolt; Gandhar Mahadeshwar; Simone Bianco; Vandana Mukherjee; James H. Kaufman
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Development and evaluation of statistical and Artificial Intelligence approaches with microbial shotgun metagenomics data as an untargeted screening tool for use in food production

2022-08-17 | Preprint
Contributors: Kristen L. Beck; Niina Haiminen; Akshay Agarwal; Anna Paola Carrieri; Matthew Madgwick; Jennifer Kelly; Victor Pylro; Ban Kawas; Martin Wiedmann; Erika Ganda
Source: check_circle
Crossref

BioAct: Biomedical Knowledge Base Construction using Active Learning

2022-04-15 | Preprint
Contributors: Dustin Wright; Anna Lisa Gentile; Noel Faux; Kristen L. Beck
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Functional Genomics Platform, A Cloud-Based Platform for Studying Microbial Life at Scale

IEEE/ACM Transactions on Computational Biology and Bioinformatics
2022-03-01 | Journal article
Contributors: Edward E. Seabolt; Gowri Nayar; Harsha Krishnareddy; Akshay Agarwal; Kristen L. Beck; Ignacio Terrizzano; Eser Kandogan; Mark Kunitomi; Mary Roth; Vandana Mukherjee et al.
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Crossref

Bacterial metatranscriptomes in wastewater can differentiate virally infected human populations

2022-02-24 | Preprint
Contributors: Rodolfo A Salido; Cameron Martino; Smruthi Karthikeyan; Shi Huang; Gibraan Rahman; Antonio Gonzalez; Livia S. Zaramela; Kristen L Beck; Shrikant Bhute; Kalen Cantrell et al.
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Crossref

Predicting Epitope Candidates for SARS-CoV-2

2022-02-10 | Preprint
Contributors: Akshay Agarwal; Kristen L. Beck; Sara Capponi; Mark Kunitomi; Gowri Nayar; Edward Seabolt; Gandhar Mahadeshwar; Simone Bianco; Vandana Mukherjee; James H. Kaufman
Source: check_circle
Crossref

Semi-Supervised Pipeline for Autonomous Annotation of SARS-CoV-2 Genomes

Viruses
2021-12-03 | Journal article
Contributors: Kristen L. Beck; Edward Seabolt; Akshay Agarwal; Gowri Nayar; Simone Bianco; Harsha Krishnareddy; Timothy A. Ngo; Mark Kunitomi; Vandana Mukherjee; James H. Kaufman
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Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes

Genome Research
2021-11-03 | Journal article
Contributors: George Armstrong; Kalen Cantrell; Shi Huang; Daniel McDonald; Niina Haiminen; Anna Paola Carrieri; Qiyun Zhu; Antonio Gonzalez; Imran McGrath; Kristen L. Beck et al.
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Crossref

Correction for Vangay et al., “Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities”

mSystems
2021-06-29 | Journal article
Contributors: Pajau Vangay; Josephine Burgin; Anjanette Johnston; Kristen L. Beck; Daniel C. Berrios; Kai Blumberg; Shane Canon; Patrick Chain; John-Marc Chandonia; Danielle Christianson et al.
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Crossref

DNA Extraction and Host Depletion Methods Significantly Impact and Potentially Bias Bacterial Detection in a Biological Fluid

mSystems
2021-06-29 | Journal article
Contributors: Erika Ganda; Kristen L. Beck; Niina Haiminen; Justin D. Silverman; Ban Kawas; Brittany D. Cronk; Renee R. Anderson; Laura B. Goodman; Martin Wiedmann; Sean M. Gibbons
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Semi-supervised identification of SARS-CoV-2 molecular targets

2021-05-04 | Other
Contributors: Kristen L. Beck; Ed Seabolt; Akshay Agarwal; Gowri Nayar; Simone Bianco; Harsha Krishnareddy; Vandana Mukherjee; James H. Kaufman
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Crossref

Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

mSystems
2021-02-23 | Journal article
Contributors: Pajau Vangay; Josephine Burgin; Anjanette Johnston; Kristen L. Beck; Daniel C. Berrios; Kai Blumberg; Shane Canon; Patrick Chain; John-Marc Chandonia; Danielle Christianson et al.
Source: check_circle
Crossref

Monitoring the microbiome for food safety and quality using deep shotgun sequencing

npj Science of Food
2021-02-08 | Journal article
Contributors: Kristen L. Beck; Niina Haiminen; David Chambliss; Stefan Edlund; Mark Kunitomi; B. Carol Huang; Nguyet Kong; Balasubramanian Ganesan; Robert Baker; Peter Markwell et al.
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Crossref

Analysis and Forecasting of Global RT-PCR Primers for SARS-CoV-2

2020-12-28 | Preprint
Contributors: Gowri Nayar; Edward E. Seabolt; Mark Kunitomi; Akshay Agarwal; Kristen L. Beck; Vandana Mukherjee; James H. Kaufman
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Crossref

DNA extraction and host depletion methods significantly impact and potentially bias bacterial detection in a biological fluid

2020-08-23 | Preprint
Contributors: Erika Ganda; Kristen L. Beck; Niina Haiminen; Justin D. Silverman; Ban Kawas; Brittany Cronk; Renee R. Anderson; Laura B. Goodman; Martin Wiedmann
Source: check_circle
Crossref

Monitoring the microbiome for food safety and quality using deep shotgun sequencing

2020-05-19 | Preprint
Contributors: Kristen L. Beck; Niina Haiminen; David Chambliss; Stefan Edlund; Mark Kunitomi; B. Carol Huang; Nguyet Kong; Balasubramanian Ganesan; Robert Baker; Peter Markwell et al.
Source: check_circle
Crossref

Peer review (1 review for 1 publication/grant)

Review activity for Clinical proteomics (1)