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Ciência ID: 001C-4DCC-C4DC

Keywords

Microbial Evolutionary Genomics, Human Gut Metagenomics

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Employment (2)

University Medical Center of the Johannes Gutenberg-University Mainz: Mainz, DE

2022-12-01 to present | Professor (Institute of Medical Microbiology and Hygiene)
Employment
Source: Self-asserted source
Vieira-Silva

Katholieke Universiteit Leuven Rega Institute for Medical Research: Leuven, BE

2014-05-01 to 2022-02-28
Employment
Source: Self-asserted source
Vieira-Silva

Works (50 of 62)

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Page 1 of 2

Differential contributions of the gut microbiota and metabolome to pathomechanisms in ulcerative colitis: an in vitro analysis

Gut Microbes
2024-12-31 | Journal article
DOI: 10.1080/19490976.2024.2424913
Contributors: Jonas Poppe; Leen Boesmans; Sara Vieira-Silva; Lise Deroover; Raul Tito; Doris Vandeputte; Greet Vandermeulen; Vicky De Preter; Jeroen Raes; Severine Vermeire et al.
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Microbiome confounders and quantitative profiling challenge predicted microbial targets in colorectal cancer development

Nature Medicine
2024-05 | Journal article
DOI: 10.1038/s41591-024-02963-2
Contributors: Raúl Y. Tito; Sara Verbandt; Marta Aguirre Vazquez; Leo Lahti; Chloe Verspecht; Verónica Lloréns-Rico; Sara Vieira-Silva; Janine Arts; Gwen Falony; Evelien Dekker et al.
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Oral dydrogesterone versus micronized vaginal progesterone for luteal phase support: a double-blind crossover study investigating pharmacokinetics and impact on the endometrium.

Human reproduction (Oxford, England)
2024-02 | Journal article
DOI: 10.1093/humrep/dead256
PMID: 38110714
Contributors: Loreti S; Thiele K; De Brucker M; Olsen C; Centelles-Lodeiro J; Bourgain C; Waelput W; Tournaye H; Griesinger G; Raes J et al.
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Vieira-Silva via Europe PubMed Central
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Dysbiosis and Associated Stool Features Improve Prediction of Response to Biological Therapy in Inflammatory Bowel Disease.

Gastroenterology
2023-12 | Journal article
DOI: 10.1053/j.gastro.2023.11.304
PMID: 38096956
Contributors: Caenepeel C; Falony G; Machiels K; Verstockt B; Goncalves PJ; Ferrante M; Sabino J; Raes J; Vieira-Silva S; Vermeire S
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Vieira-Silva via Europe PubMed Central
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Community Types of the Human Gut Virome are Associated with Endoscopic Outcome in Ulcerative Colitis.

Journal of Crohn's & colitis
2023-10 | Journal article
DOI: 10.1093/ecco-jcc/jjad061
PMID: 37052201
PMC: PMC10588789
Contributors: Jansen D; Falony G; Vieira-Silva S; Simsek C; Marcelis T; Caenepeel C; Machiels K; Raes J; Vermeire S; Matthijnssens J
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Vieira-Silva via Europe PubMed Central
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Evidence of a causal and modifiable relationship between kidney function and circulating trimethylamine N-oxide

Nature Communications
2023-09-20 | Journal article
DOI: 10.1038/s41467-023-39824-4
Contributors: Petros Andrikopoulos; Judith Aron-Wisnewsky; Rima Chakaroun; Antonis Myridakis; Sofia K. Forslund; Trine Nielsen; Solia Adriouch; Bridget Holmes; Julien Chilloux; Sara Vieira-Silva et al.
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Community types of the human gut virome are associated with endoscopic outcome in ulcerative colitis

2022-07-18 | Preprint
DOI: 10.1101/2022.07.17.22277421
Contributors: Daan Jansen; Gwen Falony; Sara Vieira-Silva; Ceren Simsek; Tine Marcelis; Clara Caenepeel; Kathleen Machiels; Jeroen Raes; Séverine Vermeire; Jelle Matthijnssens
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Microbiome and metabolome features of the cardiometabolic disease spectrum.

Nature medicine
2022-02 | Journal article
DOI: 10.1038/s41591-022-01688-4
PMID: 35177860
Contributors: Fromentin S; Forslund SK; Chechi K; Aron-Wisnewsky J; Chakaroun R; Nielsen T; Tremaroli V; Ji B; Prifti E; Myridakis A et al.
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Vieira-Silva via Europe PubMed Central
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Impairment of gut microbial biotin metabolism and host biotin status in severe obesity: effect of biotin and prebiotic supplementation on improved metabolism.

Gut
2022-01 | Journal article
DOI: 10.1136/gutjnl-2021-325753
PMID: 35017197
Contributors: Belda E; Voland L; Tremaroli V; Falony G; Adriouch S; Assmann KE; Prifiti E; Aron-Wisnewsky J; Debédat J; Le Roy T et al.
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Vieira-Silva via Europe PubMed Central
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Exploring the relationship between the gut microbiome and mental health outcomes in a posttraumatic stress disorder cohort relative to trauma-exposed controls.

European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology
2021-12 | Journal article
DOI: 10.1016/j.euroneuro.2021.11.009
PMID: 34923209
Contributors: Malan-Muller S; Valles-Colomer M; Foxx CL; Vieira-Silva S; van den Heuvel LL; Raes J; Seedat S; Lowry CA; Hemmings SMJ
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Vieira-Silva via Europe PubMed Central
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Successional Stages in Infant Gut Microbiota Maturation.

mBio
2021-12 | Journal article
DOI: 10.1128/mbio.01857-21
PMID: 34903050
Contributors: Beller L; Deboutte W; Falony G; Vieira-Silva S; Tito RY; Valles-Colomer M; Rymenans L; Jansen D; Van Espen L; Papadaki MI et al.
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Vieira-Silva via Europe PubMed Central
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Variation and transmission of the human gut microbiota across multiple familial generations

Nature Microbiology
2021-12-30 | Journal article
DOI: 10.1038/s41564-021-01021-8
Contributors: Mireia Valles-Colomer; Rodrigo Bacigalupe; Sara Vieira-Silva; Shinya Suzuki; Youssef Darzi; Raul Y. Tito; Takuji Yamada; Nicola Segata; Jeroen Raes; Gwen Falony
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Combinatorial, additive and dose-dependent drug–microbiome associations

Nature
2021-12-16 | Journal article
DOI: 10.1038/s41586-021-04177-9
Contributors: Sofia K. Forslund; Rima Chakaroun; Maria Zimmermann-Kogadeeva; Lajos Markó; Judith Aron-Wisnewsky; Trine Nielsen; Lucas Moitinho-Silva; Thomas S. B. Schmidt; Gwen Falony; Sara Vieira-Silva et al.
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Specific contributions of segmental transit times to gut microbiota composition.

Gut
2021-10 | Journal article
DOI: 10.1136/gutjnl-2021-325916
PMID: 34642242
Contributors: Steenackers N; Falony G; Augustijns P; Van der Schueren B; Vanuytsel T; Vieira-Silva S; Wauters L; Raes J; Matthys C
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Vieira-Silva via Europe PubMed Central
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Effect of obesity on gastrointestinal transit, pressure and pH using a wireless motility capsule.

European journal of pharmaceutics and biopharmaceutics : official journal of Arbeitsgemeinschaft fur Pharmazeutische Verfahrenstechnik e.V
2021-07 | Journal article
DOI: 10.1016/j.ejpb.2021.07.002
PMID: 34273543
Contributors: Steenackers N; Wauters L; Van der Schueren B; Augustijns P; Falony G; Koziolek M; Lannoo M; Mertens A; Meulemans A; Raes J et al.
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Vieira-Silva via Europe PubMed Central
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<i>Dysosmobacter welbionis</i> is a newly isolated human commensal bacterium preventing diet-induced obesity and metabolic disorders in mice.

Gut
2021-06 | Journal article
DOI: 10.1136/gutjnl-2020-323778
PMID: 34108237
Contributors: Le Roy T; Moens de Hase E; Van Hul M; Paquot A; Pelicaen R; Régnier M; Depommier C; Druart C; Everard A; Maiter D et al.
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Vieira-Silva via Europe PubMed Central
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Novel insights into the genetically obese (ob/ob) and diabetic (db/db) mice: two sides of the same coin.

Microbiome
2021-06 | Journal article
DOI: 10.1186/s40168-021-01097-8
PMID: 34183063
PMC: PMC8240277
Contributors: Suriano F; Vieira-Silva S; Falony G; Roumain M; Paquot A; Pelicaen R; Régnier M; Delzenne NM; Raes J; Muccioli GG et al.
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Vieira-Silva via Europe PubMed Central
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Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases

Nature Communications
2021-06-11 | Journal article
DOI: 10.1038/s41467-021-23821-6
Contributors: Verónica Lloréns-Rico; Sara Vieira-Silva; Pedro J. Gonçalves; Gwen Falony; Jeroen Raes
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Human and preclinical studies of the host-gut microbiome co-metabolite hippurate as a marker and mediator of metabolic health.

Gut
2021-05 | Journal article
DOI: 10.1136/gutjnl-2020-323314
PMID: 33975870
PMC: PMC8515120
Contributors: Brial F; Chilloux J; Nielsen T; Vieira-Silva S; Falony G; Andrikopoulos P; Olanipekun M; Hoyles L; Djouadi F; Neves AL et al.
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Vieira-Silva via Europe PubMed Central
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Large-scale association analyses identify host factors influencing human gut microbiome composition.

Nature genetics
2021-01 | Journal article
DOI: 10.1038/s41588-020-00763-1
PMID: 33462485
PMC: PMC8515199
Contributors: Kurilshikov A; Medina-Gomez C; Bacigalupe R; Radjabzadeh D; Wang J; Demirkan A; Le Roy CI; Raygoza Garay JA; Finnicum CT; Liu X et al.
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Vieira-Silva via Europe PubMed Central
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Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology.

Nature communications
2020-11 | Journal article
DOI: 10.1038/s41467-020-19589-w
PMID: 33208748
PMC: PMC7676231
Contributors: Molinaro A; Bel Lassen P; Henricsson M; Wu H; Adriouch S; Belda E; Chakaroun R; Nielsen T; Bergh PO; Rouault C et al.
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Vieira-Silva via Europe PubMed Central
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Review article: how the intestinal microbiota may reflect disease activity and influence therapeutic outcome in inflammatory bowel disease.

Alimentary pharmacology & therapeutics
2020-09 | Journal article
DOI: 10.1111/apt.16096
PMID: 32969507
Contributors: Caenepeel C; Sadat Seyed Tabib N; Vieira-Silva S; Vermeire S
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Vieira-Silva via Europe PubMed Central
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A synthesis of bacterial and archaeal phenotypic trait data.

Scientific data
2020-06 | Journal article
DOI: 10.1038/s41597-020-0497-4
PMID: 32503990
PMC: PMC7275036
Contributors: Madin JS; Nielsen DA; Brbic M; Corkrey R; Danko D; Edwards K; Engqvist MKM; Fierer N; Geoghegan JL; Gillings M et al.
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Vieira-Silva via Europe PubMed Central
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The reproductive microbiome - clinical practice recommendations for fertility specialists.

Reproductive biomedicine online
2020-06 | Journal article
DOI: 10.1016/j.rbmo.2020.06.014
PMID: 32753361
Contributors: García-Velasco JA; Budding D; Campe H; Malfertheiner SF; Hamamah S; Santjohanser C; Schuppe-Koistinen I; Nielsen HS; Vieira-Silva S; Laven J
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Vieira-Silva via Europe PubMed Central
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Genome-wide associations of human gut microbiome variation and implications for causal inference analyses

Nature Microbiology
2020-06-22 | Journal article
DOI: 10.1038/s41564-020-0743-8
Contributors: David A. Hughes; Rodrigo Bacigalupe; Jun Wang; Malte C. Rühlemann; Raul Y. Tito; Gwen Falony; Marie Joossens; Sara Vieira-Silva; Liesbet Henckaerts; Leen Rymenans et al.
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Statin therapy is associated with lower prevalence of gut microbiota dysbiosis

Nature
2020-05-21 | Journal article
DOI: 10.1038/s41586-020-2269-x
Contributors: Sara Vieira-Silva; Gwen Falony; Eugeni Belda; Trine Nielsen; Judith Aron-Wisnewsky; Rima Chakaroun; Sofia K. Forslund; Karen Assmann; Mireia Valles-Colomer; Thi Thuy Duyen Nguyen et al.
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Practical guidelines for gut microbiome analysis in microbiota-gut-brain axis research

Behavioral and Brain Sciences
2019 | Journal article
DOI: 10.1017/S0140525X18002881
Contributors: Mireia Valles-Colomer; Gwen Falony; Sara Vieira-Silva; Jeroen Raes
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Supplementation with Akkermansia muciniphila in overweight and obese human volunteers: a proof-of-concept exploratory study

Nature Medicine
2019-07-01 | Journal article
DOI: 10.1038/s41591-019-0495-2
Contributors: Clara Depommier; Amandine Everard; Céline Druart; Hubert Plovier; Matthias Van Hul; Sara Vieira-Silva; Gwen Falony; Jeroen Raes; Dominique Maiter; Nathalie M. Delzenne et al.
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Quantitative microbiome profiling disentangles inflammation- and bile duct obstruction-associated microbiota alterations across PSC/IBD diagnoses

Nature Microbiology
2019-06-17 | Journal article
DOI: 10.1038/s41564-019-0483-9
Contributors: Sara Vieira-Silva; João Sabino; Mireia Valles-Colomer; Gwen Falony; Gunter Kathagen; Clara Caenepeel; Isabelle Cleynen; Schalk van der Merwe; Séverine Vermeire; Jeroen Raes
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The human microbiome in health and disease: hype or hope

Acta Clinica Belgica
2019-03-04 | Journal article
DOI: 10.1080/17843286.2019.1583782
Contributors: Gwen Falony; Doris Vandeputte; Clara Caenepeel; Sara Vieira-Silva; Tanine Daryoush; Séverine Vermeire; Jeroen Raes
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The neuroactive potential of the human gut microbiota in quality of life and depression.

Nature microbiology
2019-02 | Journal article
DOI: 10.1038/s41564-018-0337-x
PMID: 30718848
Contributors: Valles-Colomer M; Falony G; Darzi Y; Tigchelaar EF; Wang J; Tito RY; Schiweck C; Kurilshikov A; Joossens M; Wijmenga C et al.
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Vieira-Silva via Europe PubMed Central
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Prebiotic Wheat Bran Fractions Induce Specific Microbiota Changes.

Frontiers in microbiology
2018 | Journal article
DOI: 10.3389/fmicb.2018.00031
PMID: 29416529
PMC: PMC5787670
Contributors: D'hoe K; Conterno L; Fava F; Falony G; Vieira-Silva S; Vermeiren J; Tuohy K; Raes J
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Vieira-Silva via Europe PubMed Central
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Gut microbiota dynamics and uraemic toxins: one size does not fit all.

Gut
2018-11 | Journal article
DOI: 10.1136/gutjnl-2018-317561
PMID: 30464044
Contributors: Joossens M; Faust K; Gryp T; Nguyen ATL; Wang J; Eloot S; Schepers E; Dhondt A; Pletinck A; Vieira-Silva S et al.
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Vieira-Silva via Europe PubMed Central
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A low-gluten diet induces changes in the intestinal microbiome of healthy Danish adults

Nature Communications
2018-11-13 | Journal article
DOI: 10.1038/s41467-018-07019-x
Contributors: Lea B. S. Hansen; Henrik M. Roager; Nadja B. Søndertoft; Rikke J. Gøbel; Mette Kristensen; Mireia Vallès-Colomer; Sara Vieira-Silva; Sabine Ibrügger; Mads V. Lind; Rasmus B. Mærkedahl et al.
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Multiomics Analyses to Deliver the Most Effective Treatment to Every Patient With Inflammatory Bowel Disease.

Gastroenterology
2018-08 | Journal article
DOI: 10.1053/j.gastro.2018.07.039
PMID: 30077628
Contributors: Weersma RK; Xavier RJ; IBD Multi Omics Consortium; Vermeire S; Barrett JC
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Vieira-Silva via Europe PubMed Central
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Population-level analysis of Blastocystis subtype prevalence and variation in the human gut microbiota.

Gut
2018-08 | Journal article
DOI: 10.1136/gutjnl-2018-316106
PMID: 30171064
PMC: PMC6582744
Contributors: Tito RY; Chaffron S; Caenepeel C; Lima-Mendez G; Wang J; Vieira-Silva S; Falony G; Hildebrand F; Darzi Y; Rymenans L et al.
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Vieira-Silva via Europe PubMed Central
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Richness and ecosystem development across faecal snapshots of the gut microbiota.

Nature microbiology
2018-05 | Journal article
DOI: 10.1038/s41564-018-0143-5
PMID: 29693658
Contributors: Falony G; Vieira-Silva S; Raes J
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Vieira-Silva via Europe PubMed Central
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Quantitative microbiome profiling links gut community variation to microbial load.

Nature
2017-11 | Journal article
DOI: 10.1038/nature24460
PMID: 29143816
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Vieira-Silva via Europe PubMed Central
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Nlrp6- and ASC-Dependent Inflammasomes Do Not Shape the Commensal Gut Microbiota Composition.

Immunity
2017-08 | Journal article
DOI: 10.1016/j.immuni.2017.07.011
PMID: 28801232
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Vieira-Silva via Europe PubMed Central
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Prebiotic inulin-type fructans induce specific changes in the human gut microbiota.

2017-02 | Journal article
DOI: 10.1136/gutjnl-2016-313271
PMID: 28213610
Contributors: Vandeputte D; Falony G; Vieira-Silva S; Wang J; Sailer M; Theis S; Verbeke K; Raes J
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Vieira-Silva via Europe PubMed Central
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Water activity does not shape the microbiota in the human colon.

2017-01 | Journal article
DOI: 10.1136/gutjnl-2016-313530
PMID: 28062523
Contributors: Vandeputte D; Falony G; D'hoe K; Vieira-Silva S; Raes J
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Vieira-Silva via Europe PubMed Central
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Faecal Metaproteomic Analysis Reveals a Personalized and Stable Functional Microbiome and Limited Effects of a Probiotic Intervention in Adults.

2016 | Journal article
DOI: 10.1371/journal.pone.0153294
PMID: 27070903
PMC: PMC4829149
Contributors: Kolmeder CA; Salojärvi J; Ritari J; de Been M; Raes J; Falony G; Vieira-Silva S; Kekkonen RA; Corthals GL; Palva A et al.
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Vieira-Silva via Europe PubMed Central
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Heritable components of the human fecal microbiome are associated with visceral fat.

2016-09 | Journal article
PMID: 27666579
PMC: PMC5036307
Contributors: Beaumont M; Goodrich JK; Jackson MA; Yet I; Davenport ER; Vieira-Silva S; Debelius J; Pallister T; Mangino M; Raes J et al.
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Human gut microbes impact host serum metabolome and insulin sensitivity.

2016-07 | Journal article
PMID: 27409811
Contributors: Pedersen HK; Gudmundsdottir V; Nielsen HB; Hyotylainen T; Nielsen T; Jensen BA; Forslund K; Hildebrand F; Prifti E; Falony G et al.
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Species–function relationships shape ecological properties of the human gut microbiome

Nature Microbiology
2016-06-13 | Journal article
DOI: 10.1038/nmicrobiol.2016.88
Contributors: Sara Vieira-Silva; Gwen Falony; Youssef Darzi; Gipsi Lima-Mendez; Roberto Garcia Yunta; Shujiro Okuda; Doris Vandeputte; Mireia Valles-Colomer; Falk Hildebrand; Samuel Chaffron et al.
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Primary sclerosing cholangitis is characterised by intestinal dysbiosis independent from IBD.

2016-05 | Journal article
DOI: 10.1136/gutjnl-2015-311004
PMID: 27207975
Contributors: Sabino J; Vieira-Silva S; Machiels K; Joossens M; Falony G; Ballet V; Ferrante M; Van Assche G; Van der Merwe S; Vermeire S et al.
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Vieira-Silva via Europe PubMed Central
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Towards biome-specific analysis of meta-omics data

The ISME Journal
2016-05 | Journal article
DOI: 10.1038/ismej.2015.188
Contributors: Youssef Darzi; Gwen Falony; Sara Vieira-Silva; Jeroen Raes
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Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity.

2016-04 | Journal article
DOI: 10.1126/science.aad3369
PMID: 27126040
Contributors: Zhernakova A; Kurilshikov A; Bonder MJ; Tigchelaar EF; Schirmer M; Vatanen T; Mujagic Z; Vila AV; Falony G; Vieira-Silva S et al.
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Population-level analysis of gut microbiome variation.

2016-04 | Journal article
DOI: 10.1126/science.aad3503
PMID: 27126039
Contributors: Falony G; Joossens M; Vieira-Silva S; Wang J; Darzi Y; Faust K; Kurilshikov A; Bonder MJ; Valles-Colomer M; Vandeputte D et al.
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Meta-omics in IBD research: applications, challenges and guidelines.

2016-01 | Journal article
PMID: 26802086
Contributors: Valles-Colomer M; Darzi Y; Vieira-Silva S; Falony G; Joossens M; Raes J
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Peer review (6 reviews for 5 publications/grants)

Review activity for Genome biology. (1)
Review activity for Gut (1)
Review activity for Microbiome (2)
Review activity for Nature communications (1)
Review activity for Nature microbiology. (1)
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