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Funding (1)

Integrating genomic, serological and epidemiological information to understand the emergence, spread and establishment of novel SARS-CoV-2 variants

2022-03-31 to 2026-03-30 | Grant
Wellcome Trust (London, UK, GB)
GRANT_NUMBER:

224190/Z/21/Z

Part of GRANT_NUMBER:

PLM23173

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WT Grant Tracker

Works (27)

Revisiting immunity vs. exposure in schistosomiasis: A mathematical modeling study of delayed concomitant immunity

PNAS Nexus
2024-10-01 | Journal article
Contributors: Gregory C Milne; Rebecca C Oettle; Charles Whittaker; Narcis B Kabatereine; Maria-Gloria Basáñez; Joanne P Webster; Martin Walker; Shona Wilson; Zhiqiang An
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Crossref

Enhanced testing can substantially improve defence against several types of respiratory virus pandemic

2024-02-13 | Preprint
Contributors: James Petrie; James A. Hay; Oraya Srimokla; Jasmina Panovska-Griffiths; Charles Whittaker; Joanna Masel
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Crossref

Intrinsic randomness in epidemic modelling beyond statistical uncertainty

Communications Physics
2023-06-20 | Journal article
Contributors: Matthew J. Penn; Daniel J. Laydon; Joseph Penn; Charles Whittaker; Christian Morgenstern; Oliver Ratmann; Swapnil Mishra; Mikko S. Pakkanen; Christl A. Donnelly; Samir Bhatt
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Crossref

Alternative epidemic indicators for COVID-19 in three settings with incomplete death registration systems

Science Advances
2023-06-09 | Journal article
Contributors: Ruth McCabe; Charles Whittaker; Richard J. Sheppard; Nada Abdelmagid; Aljaile Ahmed; Israa Zain Alabdeen; Nicholas F. Brazeau; Abd Elhameed Ahmed Abd Elhameed; Abdulla Salem Bin-Ghouth; Arran Hamlet et al.
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Epidemiological and genomic investigation of chikungunya virus in Rio de Janeiro state, Brazil, between 2015 and 2018

2023-04-20 | Preprint
Contributors: Filipe Romero Rebello Moreira; Mariane Talon de Menezes; Clarisse Salgado-Benvindo; Charles Whittaker; Victoria Cox; Nilani Chandradeva; Hury Hellen Souza de Paula; André Frederico Martins; Raphael Rangel das Chagas; Rodrigo Decembrino Vargas Brasil et al.
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Crossref

Seasonal dynamics of Anopheles stephensi and its implications for mosquito detection and emergent malaria control in the Horn of Africa

Proceedings of the National Academy of Sciences
2023-02-21 | Journal article
Contributors: Charles Whittaker; Arran Hamlet; Ellie Sherrard-Smith; Peter Winskill; Gina Cuomo-Dannenburg; Patrick G. T. Walker; Marianne Sinka; Samuel Pironon; Ashwani Kumar; Azra Ghani et al.
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Crossref

The uncertainty of infectious disease outbreaks is underestimated

2023-01-17 | Preprint
Contributors: Matthew Penn; Daniel Laydon; Joseph penn; Charles Whittaker; Christian Morgenstern; Oliver Ratmann; Swapnil Mishra; Mikko Pakkanen; Christl Donnelly; Samir Bhatt
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Crossref

The interaction of transmission intensity, mortality, and the economy: a retrospective analysis of the COVID-19 pandemic

2022-11-04 | Preprint
Contributors: Christian Morgenstern; Daniel Laydon; Charles Whittaker; Swapnil Mishra; David Haw; Samir Bhatt; Neil Ferguson
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Crossref

Factors associated with variation in single-dose albendazole pharmacokinetics: A systematic review and modelling analysis

PLOS Neglected Tropical Diseases
2022-10-28 | Journal article
Contributors: Charles Whittaker; Husain Poonawala; Cédric B. Chesnais; Sébastien D. S. Pion; Joseph Kamgno; Martin Walker; Maria-Gloria Basáñez; Michel Boussinesq
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Understanding the Potential Impact of Different Drug Properties on Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Transmission and Disease Burden: A Modelling Analysis

Clinical Infectious Diseases
2022-08-24 | Journal article
Contributors: Charles Whittaker; Oliver J Watson; Carlos Alvarez-Moreno; Nasikarn Angkasekwinai; Adhiratha Boonyasiri; Luis Carlos Triana; Duncan Chanda; Lantharita Charoenpong; Methee Chayakulkeeree; Graham S Cooke et al.
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Author Correction: Spatial and temporal fluctuations in COVID-19 fatality rates in Brazilian hospitals

Nature Medicine
2022-07 | Journal article
Contributors: Andrea Brizzi; Charles Whittaker; Luciana M. S. Servo; Iwona Hawryluk; Carlos A. Prete, Jr; William M. de Souza; Renato S. Aguiar; Leonardo J. T. Araujo; Leonardo S. Bastos; Alexandra Blenkinsop et al.
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Spatial and temporal fluctuations in COVID-19 fatality rates in Brazilian hospitals

Nature Medicine
2022-07 | Journal article
Contributors: Andrea Brizzi; Charles Whittaker; Luciana M. S. Servo; Iwona Hawryluk; Carlos A. Prete, Jr; William M. de Souza; Renato S. Aguiar; Leonardo J. T. Araujo; Leonardo S. Bastos; Alexandra Blenkinsop et al.
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Crossref

Factors associated with variation in single-dose albendazole pharmacokinetics: A systematic review and modelling analysis

2022-05-20 | Preprint
Contributors: Charles Whittaker; Cédric B. Chesnais; Sébastien D.S. Pion; Joseph Kamgno; Martin Walker; Maria-Gloria Basáñez; Michel Boussinesq
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Crossref

Estimating the COVID-19 infection fatality ratio accounting for seroreversion using statistical modelling

Communications Medicine
2022-05-19 | Journal article
Contributors: Nicholas F. Brazeau; Robert Verity; Sara Jenks; Han Fu; Charles Whittaker; Peter Winskill; Ilaria Dorigatti; Patrick G. T. Walker; Steven Riley; Ricardo P. Schnekenberg et al.
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A novel statistical framework for exploring the population dynamics and seasonality of mosquito populations

Proceedings of the Royal Society B: Biological Sciences
2022-04-13 | Journal article
Contributors: Charles Whittaker; Peter Winskill; Marianne Sinka; Samuel Pironon; Claire Massey; Daniel J. Weiss; Michele Nguyen; Peter W. Gething; Ashwani Kumar; Azra Ghani et al.
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Altered demographic profile of hospitalizations during the second COVID-19 wave in Amazonas, Brazil

The Lancet Regional Health - Americas
2021-10 | Journal article
Contributors: Charles Whittaker; Oliver Ratmann; Christopher Dye; Ester C. Sabino; Nuno R. Faria
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Changing composition of SARS-CoV-2 lineages and rise of Delta variant in England

EClinicalMedicine
2021-09 | Journal article
Contributors: Swapnil Mishra; Sören Mindermann; Mrinank Sharma; Charles Whittaker; Thomas A Mellan; Thomas Wilton; Dimitra Klapsa; Ryan Mate; Martin Fritzsche; Maria Zambon et al.
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Modelling intensive care unit capacity under different epidemiological scenarios of the COVID-19 pandemic in three Western European countries

International Journal of Epidemiology
2021-07-09 | Journal article
Contributors: Ruth McCabe; Mara D Kont; Nora Schmit; Charles Whittaker; Alessandra Løchen; Marc Baguelin; Edward Knock; Lilith K Whittles; John Lees; Nicholas F Brazeau et al.
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Temperature and population density influence SARS-CoV-2 transmission in the absence of nonpharmaceutical interventions

Proceedings of the National Academy of Sciences
2021-06-22 | Journal article
Contributors: Thomas P. Smith; Seth Flaxman; Amanda S. Gallinat; Sylvia P. Kinosian; Michael Stemkovski; H. Juliette T. Unwin; Oliver J. Watson; Charles Whittaker; Lorenzo Cattarino; Ilaria Dorigatti et al.
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Within-country age-based prioritisation, global allocation, and public health impact of a vaccine against SARS-CoV-2: A mathematical modelling analysis

Vaccine
2021-05 | Journal article
Contributors: Alexandra B. Hogan; Peter Winskill; Oliver J. Watson; Patrick G.T. Walker; Charles Whittaker; Marc Baguelin; Nicholas F. Brazeau; Giovanni D. Charles; Katy A.M. Gaythorpe; Arran Hamlet et al.
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Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil

Science
2021-05-21 | Journal article
Contributors: Nuno R. Faria; Thomas A. Mellan; Charles Whittaker; Ingra M. Claro; Darlan da S. Candido; Swapnil Mishra; Myuki A. E. Crispim; Flavia C. S. Sales; Iwona Hawryluk; John T. McCrone et al.
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Leveraging community mortality indicators to infer COVID-19 mortality and transmission dynamics in Damascus, Syria

Nature Communications
2021-04-22 | Journal article
Contributors: Oliver J. Watson; Mervat Alhaffar; Zaki Mehchy; Charles Whittaker; Zack Akil; Nicholas F. Brazeau; Gina Cuomo-Dannenburg; Arran Hamlet; Hayley A. Thompson; Marc Baguelin et al.
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State-level tracking of COVID-19 in the United States

Nature Communications
2020-12-03 | Journal article
Contributors: H. Juliette T. Unwin; Swapnil Mishra; Valerie C. Bradley; Axel Gandy; Thomas A. Mellan; Helen Coupland; Jonathan Ish-Horowicz; Michaela A. C. Vollmer; Charles Whittaker; Sarah L. Filippi et al.
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Inference of COVID-19 epidemiological distributions from Brazilian hospital data

Journal of The Royal Society Interface
2020-11 | Journal article
Contributors: Iwona Hawryluk; Thomas A. Mellan; Henrique Hoeltgebaum; Swapnil Mishra; Ricardo P. Schnekenberg; Charles Whittaker; Harrison Zhu; Axel Gandy; Christl A. Donnelly; Seth Flaxman et al.
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Quantifying Plasmodium falciparum infections clustering within households to inform household-based intervention strategies for malaria control programs: An observational study and meta-analysis from 41 malaria-endemic countries

PLOS Medicine
2020-10-29 | Journal article
Contributors: Gillian Stresman; Lorenz von Seidlein; Charlie Whittaker; Hannah C. Slater; Teun Bousema; Jackie Cook
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The potential public health consequences of COVID-19 on malaria in Africa

Nature Medicine
2020-09 | Journal article
Contributors: Ellie Sherrard-Smith; Alexandra B. Hogan; Arran Hamlet; Oliver J. Watson; Charlie Whittaker; Peter Winskill; Fatima Ali; Audu B. Mohammad; Perpetua Uhomoibhi; Ibrahim Maikore et al.
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The impact of COVID-19 and strategies for mitigation and suppression in low- and middle-income countries

Science
2020-07-24 | Journal article
Contributors: Patrick G. T. Walker; Charles Whittaker; Oliver J. Watson; Marc Baguelin; Peter Winskill; Arran Hamlet; Bimandra A. Djafaara; Zulma Cucunubá; Daniela Olivera Mesa; Will Green et al.
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