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Loop profile: 1436214
Scopus Author ID: 57328121000

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Northumbria University: N/A, GB

2022-09-10
Employment
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Northumbria University

Works (26)

Comprehensive Analysis of SARS-CoV-2 Spike Evolution: Epitope Classification and Immune Escape Prediction

2024-12-09 | Preprint
DOI: 10.1101/2024.12.06.627164
Contributors: Natalia Fagundes Borges Teruel; Matthew Crown; Ricardo Rajsbaum; Matthew Bashton; Rafael Najmanovich
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Crossref

TRIM7 ubiquitinates SARS-CoV-2 membrane protein to limit apoptosis and viral replication

Nature Communications
2024-11-30 | Journal article | Author
DOI: 10.1038/s41467-024-54762-5
SOURCE-WORK-ID:

786c8405-d8ab-431b-9892-c1f886e2c87c

EID:

2-s2.0-85211150705

PMID: 39616206
Contributors: Maria Gonzalez-Orozco; Hsiang-chi Tseng; Adam Hage; Hongjie Xia; Padmanava Behera; Kazi Afreen; Yoatzin Peñaflor-Tellez; Maria I. Giraldo; Matthew Huante; Lucinda Puebla-Clark et al.
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Northumbria University

Spatial and temporal epidemiology of SARS-CoV-2 virus lineages in Teesside, UK, in 2020

Peer Community Journal
2024-09-04 | Journal article | Author
DOI: 10.24072/pcjournal.461
SOURCE-WORK-ID:

8958ba1a-0775-4988-8af2-c7b0106262b1

EID:

2-s2.0-85204189236
Contributors: E. D. Moss; S. P. Rushton; Paul Baker; Matthew Bashton; Matthew Crown; R. N. Dos Santos; Andrew Nelson; S. J. O’Brien; Z. Richards; R. A. Sanderson et al.
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Northumbria University

ProCogGraph: A Graph-Based Mapping of Cognate Ligand Domain Interactions

2024-08-09 | Preprint
DOI: 10.1101/2024.08.08.607191
Contributors: Matthew Crown; Matthew Bashton
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Crossref

Environmental microbiome in the home and daycare settings during the COVID-19 pandemic, and potential risk of non-communicable disease in children

Environmental Microbiology Reports
2024-02 | Journal article | Author
DOI: 10.1111/1758-2229.13233
SOURCE-WORK-ID:

8339edd7-2e05-46b2-836a-90c2dc321ea9

EID:

2-s2.0-85182148574

PMID: 38217304
Contributors: Jill Ann McKay; Matthew Crown; Matthew Bashton; David Pearce; Jane Entwistle ; Vartul Sangal
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Northumbria University

OMEinfo ENA Data Analysis

2024-01-16 | Dataset | Author
DOI: 10.6084/m9.figshare.25003217
SOURCE-WORK-ID:

25003217
Contributors: Matthew Crown
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figshare

OMEinfo v1 Data Packet

2024-01-16 | Dataset | Author
DOI: 10.6084/m9.figshare.25000025
SOURCE-WORK-ID:

25000025
Contributors: Matthew Crown
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figshare

OMEinfo v2 Data Packet

2024-01-16 | Dataset | Author
DOI: 10.6084/m9.figshare.25000343
SOURCE-WORK-ID:

25000343
Contributors: Matthew Crown
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figshare

OMEinfo: global geographic metadata for -omics experiments

Bioinformatics Advances
2024-01-05 | Journal article
DOI: 10.1093/bioadv/vbae025
Contributors: Matthew Crown; Matthew Bashton; Sofia Forslund
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Crossref

ProCogGraph: a graph-based mapping of cognate ligand domain interactions

Bioinformatics Advances
2024-01-05 | Journal article
DOI: 10.1093/bioadv/vbae161
Contributors: Matthew Crown; Matthew Bashton; Michael Gromiha
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Crossref

Adaptability of space habitats using the Rhythmic Buildings strategy

Acta Astronautica
2023-10 | Journal article
DOI: 10.1016/j.actaastro.2023.06.045
Contributors: Layla van Ellen; Ben Bridgens; Neil Burford; Matthew Crown; Oliver Heidrich
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Crossref
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OMEinfo: Global Geographic Metadata for -omics Experiments

2023-10-27 | Preprint
DOI: 10.1101/2023.10.23.563576
Contributors: Matthew Crown; Matthew Bashton
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Crossref

Investigation of hospital discharge cases and SARS-CoV-2 introduction into Lothian care homes

Journal of Hospital Infection
2023-05-01 | Journal article | Author
DOI: 10.1016/j.jhin.2023.02.010
SOURCE-WORK-ID:

93684c86-0d50-45f8-ae2d-950f5f4e31e0

EID:

2-s2.0-85151248667

PMID: 36906180
Contributors: S. Cotton; M. P. McHugh; R. Dewar; J. G. Haas; K. Templeton; The COVID-19 Genomics UK (COG-UK) Consortium; Samuel C. Robson; Thomas R. Connor; Nicholas J. Loman; Tanya Golubchik et al.
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Northumbria University

Multiple pathways of SARS-CoV-2 nosocomial transmission uncovered by integrated genomic and epidemiological analyses during the second wave of the COVID-19 pandemic in the UK

Frontiers in cellular and infection microbiology
2023-01-20 | Journal article | Author
DOI: 10.3389/fcimb.2022.1066390
SOURCE-WORK-ID:

d4ed050a-95ea-4680-9944-44107d71ff93

PMID: 36741977
EID:

2-s2.0-85147390358
Contributors: Kate F. Cook; Angela H. Beckett; Sharon Glaysher; Salman Goudarzi; Christopher Fearn; Katie F. Loveson; Scott Elliott; Sarah Wyllie; Allyson Lloyd; Kelly Bicknell et al.
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Northumbria University

Factors affecting turnaround time of SARS-CoV-2 sequencing for inpatient infection prevention and control decision making

Journal of Hospital Infection
2023-01-01 | Journal article | Author
DOI: 10.1016/j.jhin.2022.09.022
SOURCE-WORK-ID:

bdd1fdb2-c5ff-4ab2-b015-1e56b02cb39b

PMID: 36228768
EID:

2-s2.0-85141483239
Contributors: Hayley Colton; Matthew D. Parker; Oliver Stirrup; James Blackstone; Matthew Loose; C. Patrick McClure; Sunando Roy; Charlotte Williams; Julie McLeod; Darren Smith et al.
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Northumbria University

Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning

Scientific Reports
2022-12 | Journal article | Author
DOI: 10.1038/s41598-022-15661-1
SOURCE-WORK-ID:

4f73988a-c86e-4aad-9af4-7ab4b0b5441a

EID:

2-s2.0-85134374428

PMID: 35853960
Contributors: Sema Nickbakhsh; Joseph Hughes; Nicolaos Christofidis; Emily Griffiths; Sharif Shaaban; Jessica Enright; Katherine Smollett; Kyriaki Nomikou; Natasha Palmalux; Lily Tong et al.
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Northumbria University

SARS-CoV-2 lineage dynamics in England from September to November 2021

BMC Infectious Diseases
2022-12 | Journal article | Author
DOI: 10.1186/s12879-022-07628-4
SOURCE-WORK-ID:

2ca79132-902a-48a7-9379-13bb819ed6b9

EID:

2-s2.0-85135148943

PMID: 35896970
Contributors: Oliver Eales; Andrew J. Page; Leonardo de Oliveira Martins; Haowei Wang; Barbara Bodinier; David Haw; Jakob Jonnerby; Christina Atchison; The COVID-19 Genomics UK (COG-UK) Consortium; Deborah Ashby et al.
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Northumbria University

Genomics-informed outbreak investigations of SARS-CoV-2 using civet

PLOS Global Public Health
2022-12-09 | Journal article | Author
DOI: 10.1371/journal.pgph.0000704
SOURCE-WORK-ID:

bc9470f2-f28e-4727-ab09-03813feab8b2

EID:

2-s2.0-85195543047
Contributors: Áine O’Toole; Verity Hill; Ben Jackson; Rebecca Dewar; Nikita Sahadeo; Rachel Colquhoun; Stefan Rooke; J. T. McCrone; Kate Duggan; Martin P. McHugh et al.
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Northumbria University

COVID-19 due to the B.1.617.2 (Delta) variant compared to B.1.1.7 (Alpha) variant of SARS-CoV-2

Scientific Reports
2022-12-01 | Journal article | Author
DOI: 10.1038/s41598-022-14016-0
SOURCE-WORK-ID:

959c8395-4892-4347-837d-38bf0a5e523e

EID:

2-s2.0-85133106586

PMID: 35764879
Contributors: The COVID-19 Genomics UK (COG-UK) Consortium; Kerstin Kläser; Erika Molteni; Mark Graham; Liane S. Canas; Marc F. Österdahl; Michela Antonelli; Liyuan Chen; Jie Deng; Benjamin Murray et al.
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Northumbria University

Publisher Correction

Nature Microbiology
2022-10-01 | Other | Author
DOI: 10.1038/s41564-022-01241-6
SOURCE-WORK-ID:

2f3c4067-6a4f-4bbf-abb6-b736074c1f79

EID:

2-s2.0-85139215714

PMID: 36114232
Contributors: Brian J. Willett; Joe Grove; Oscar A. MacLean; Craig Wilkie; Giuditta De Lorenzo; Wilhelm Furnon; Diego Cantoni; Sam Scott; Nicola Logan; Shirin Ashraf et al.
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Northumbria University

Recurrent SARS-CoV-2 mutations in immunodeficient patients

Virus Evolution
2022-08-12 | Journal article | Author
DOI: 10.1093/ve/veac050
SOURCE-WORK-ID:

0c646b86-a802-4c16-8c15-00e8e25fc7fe

EID:

2-s2.0-85160028980
Contributors: The COVID-19 Genomics UK (COG-UK) Consortium; S. A.J. Wilkinson; Natalie Sparks; Beatrix Kele; Thomas P. Peacock; Samuel C. Robson; Thomas R. Connor; Nicholas J. Loman; Tanya Golubchik; Rocio T. Martinez Nunez et al.
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Northumbria University

SPEAR

Bioinformatics
2022-08-01 | Journal article | Author
DOI: 10.1093/bioinformatics/btac391
SOURCE-WORK-ID:

dd7e3648-d3f7-4c9f-aaf3-fd7552745fa1

EID:

2-s2.0-85135727294
Contributors: Matthew Crown; Natalia Teruel; Rafael Najmanovich; Matthew Bashton
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Northumbria University
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Preferred source (of 2)‎

SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway

Nature Microbiology
2022-07-07 | Journal article | Author
DOI: 10.1038/s41564-022-01143-7
SOURCE-WORK-ID:

2936b06e-93ba-4624-bd26-53fad1cfe247

EID:

2-s2.0-85133843705

PMID: 35798890
Contributors: Brian J. Willett; Joe Grove; Oscar A. MacLean; Craig Wilkie; Giuditta De Lorenzo; Wilhelm Furnon; Diego Cantoni; Sam Scott; Nicola Logan; Shirin Ashraf et al.
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Northumbria University

Descriptive comparison of admission characteristics between pandemic waves and multivariable analysis of the association of the Alpha variant (B.1.1.7 lineage) of SARS-CoV-2 with disease severity in inner London

BMJ Open
2022-02-08 | Journal article | Author
DOI: 10.1136/bmjopen-2021-055474
SOURCE-WORK-ID:

252e9525-b054-45d5-8b5c-d8d57192cfc6

EID:

2-s2.0-85124310326

PMID: 35135773
Contributors: The COVID-19 Genomics UK (COG-UK) Consortium; Luke B. Snell; Wenjuan Wang; Adela Alcolea-Medina; Themoula Charalampous; Rahul Batra; Leonardo De Jongh; Finola Higgins; Gaia Nebbia; Yanzhong Wang et al.
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Northumbria University

Computational analysis of the effect of SARS-CoV-2 variant Omicron Spike protein mutations on dynamics, ACE2 binding and propensity for immune escape

2021-12-15 | Preprint
DOI: 10.1101/2021.12.14.472622
Contributors: Natalia Teruel; Matthew Crown; Matthew Bashton; Rafael Najmanovich
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Crossref

Bacterial diversity in house dust

Frontiers in Environmental Science
2021-11-23 | Journal article | Author
DOI: 10.3389/fenvs.2021.754657
DOI: 10.3389/fenvs.2021.754657
SOURCE-WORK-ID:

14e0d183-c812-467f-9109-398e76047d0c

EID:

2-s2.0-85120887936

EID:

2-s2.0-85120887936
Contributors: Jane Entwistle ; Jonathan R. Thompson; Ariadne Argyraki; Matthew Bashton; Lindsay Bramwell; Matthew Crown; Andrew Hursthouse; Khadija Jabeen; Amélia P. Marinho-Reis; Anil Namdeo et al.
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Northumbria University

Peer review (1 review for 1 publication/grant)

Review activity for PLoS computational biology. (1)
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