Personal information

Activities

Employment (1)

National Institute of Advanced Industrial Science and Technology (AIST): Ikeda, Osaka, JP

2001-04-01 to present
Employment
Source: Self-asserted source
Tsutomu Nakamura

Education and qualifications (2)

Kyoto University: Kyoto, JP

1992-04-01 to 1997-03-31 | PhD (Graduate School of Science)
Education
Source: Self-asserted source
Tsutomu Nakamura

Kyoto University: Kyoto, JP

1988-04-01 to 1992-03-31 (Faculty of Science)
Education
Source: Self-asserted source
Tsutomu Nakamura

Works (44)

Functional analysis of the N‐terminal region of acetylxylan esterase from Caldanaerobacter subterraneus subsp. tengcongensis

FEBS Open Bio
2022-10 | Journal article
Contributors: Kohei Sasamoto; Tomoki Himiyama; Kunihiko Moriyoshi; Takashi Ohmoto; Koichi Uegaki; Tsutomu Nakamura; Yoshiaki Nishiya
Source: check_circle
Crossref

Crystal structure of acetylxylan esterase from Caldanaerobacter subterraneus subsp. tengcongensis

Acta Crystallographica Section F Structural Biology Communications
2021-11-01 | Journal article
Contributors: Kohei Sasamoto; Tomoki Himiyama; Kunihiko Moriyoshi; Takashi Ohmoto; Koichi Uegaki; Yoshiaki Nishiya; Tsutomu Nakamura
Source: check_circle
Crossref

Polyploid engineering by increasing mutant gene dosage in yeasts

Microbial Biotechnology
2021-05 | Journal article
Contributors: Nobuo Fukuda; Shinya Honda; Maki Fujiwara; Yuko Yoshimura; Tsutomu Nakamura
Source: check_circle
Crossref

Rebuilding Ring-Type Assembly of Peroxiredoxin by Chemical Modification

2020-09-30 | Preprint
Contributors: Tomoki Himiyama; Yuko Tsuchiya; Yasushige Yonezawa; Tsutomu Nakamura
Source: check_circle
Crossref

Rebuilding Ring-Type Assembly of Peroxiredoxin by Chemical Modification

2020-09-30 | Other
Contributors: Tomoki Himiyama; Yuko Tsuchiya; Yasushige Yonezawa; Tsutomu Nakamura
Source: check_circle
Crossref

Disassembly of the ring‐type decameric structure of peroxiredoxin from Aeropyrum pernix K1 by amino acid mutation

Protein Science
2020-05 | Journal article
Contributors: Tomoki Himiyama; Tsutomu Nakamura
Source: check_circle
Crossref

Distinct molecular assembly of homologous peroxiredoxins from Pyrococcus horikoshii and Thermococcus kodakaraensis

The Journal of Biochemistry
2019-07-01 | Journal article
Part of ISSN: 0021-924X
Part of ISSN: 1756-2651
Source: Self-asserted source
Tsutomu Nakamura

Application of chromosomal gene insertion into Escherichia coli for expression of recombinant proteins

Journal of Bioscience and Bioengineering
2018-08 | Journal article
Part of ISSN: 1389-1723
Contributors: Tsutomu Nakamura; Daisuke Koma; Maki Oshima; Hideto Hoshino; Takashi Ohmoto; Koichi Uegaki
Source: Self-asserted source
Tsutomu Nakamura via Crossref Metadata Search

Alteration of molecular assembly of peroxiredoxins from hyperthermophilic archaea.

Journal of biochemistry
2017-12 | Journal article
Contributors: Nakamura T; Oshima M; Yasuda M; Shimamura A; Morita J; Uegaki K
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Heat-induced native dimerization prevents amyloid formation by variable domain from immunoglobulin light-chain REI

The FEBS Journal
2017-09 | Journal article
Part of ISSN: 1742-464X
Source: Self-asserted source
Tsutomu Nakamura
grade
Preferred source (of 2)‎

Substrate recognition of N,N'-diacetylchitobiose deacetylase from Pyrococcus horikoshii.

Journal of structural biology
2016-09 | Journal article
Contributors: Nakamura T; Yonezawa Y; Tsuchiya Y; Niiyama M; Ida K; Oshima M; Morita J; Uegaki K
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Multiple crystal forms of N,N'-diacetylchitobiose deacetylase from Pyrococcus furiosus.

Acta crystallographica. Section F, Structural biology communications
2015-06 | Journal article
Contributors: Nakamura T; Niiyama M; Hashimoto W; Ida K; Abe M; Morita J; Uegaki K
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Expression from engineered Escherichia coli chromosome and crystallographic study of archaeal N,N'-diacetylchitobiose deacetylase.

The FEBS journal
2014-06 | Journal article
Contributors: Mine S; Niiyama M; Hashimoto W; Ikegami T; Koma D; Ohmoto T; Fukuda Y; Inoue T; Abe Y; Ueda T et al.
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Solution structure of the chitin-binding domain 1 (ChBD1) of a hyperthermophilic chitinase from Pyrococcus furiosus.

Journal of biochemistry
2014-02 | Journal article
Contributors: Mine S; Nakamura T; Sato T; Ikegami T; Uegaki K
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Structure of peroxiredoxin from the anaerobic hyperthermophilic archaeon Pyrococcus horikoshii.

Acta crystallographica. Section F, Structural biology and crystallization communications
2013-07 | Journal article
Contributors: Nakamura T; Mori A; Niiyama M; Matsumura H; Tokuyama C; Morita J; Uegaki K; Inoue T
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Characterization and crystal structure of the thermophilic ROK hexokinase from Thermus thermophilus.

Journal of bioscience and bioengineering
2012-08 | Journal article
Contributors: Nakamura T; Kashima Y; Mine S; Oku T; Uegaki K
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Expression, refolding, and purification of active diacetylchitobiose deacetylase from Pyrococcus horikoshii.

Protein expression and purification
2012-08 | Journal article
Contributors: Mine S; Ikegami T; Kawasaki K; Nakamura T; Uegaki K
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Crystallization and preliminary crystallographic analysis of a putative glucokinase/hexokinase from Thermus thermophilus.

Acta crystallographica. Section F, Structural biology and crystallization communications
2011-12 | Journal article
Contributors: Nakamura T; Kashima Y; Mine S; Oku T; Uegaki K
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Growth of Protein Crystals by Syringe-Type Top-Seeded Solution Growth

Crystal Growth & Design
2011-05-04 | Journal article
Part of ISSN: 1528-7483
Contributors: Hiroyoshi Matsumura; Keisuke Kakiniuchi; Tsutomu Nakamura; Shigeru Sugiyama; Mihoko Maruyama; Hiroaki Adachi; Kazufumi Takano; Satoshi Murakami; Tsuyoshi Inoue; Yusuke Mori
Source: Self-asserted source
Tsutomu Nakamura via Crossref Metadata Search

Crystal structure of the cambialistic superoxide dismutase from Aeropyrum pernix K1--insights into the enzyme mechanism and stability.

The FEBS journal
2011-02 | Journal article
Contributors: Nakamura T; Torikai K; Uegaki K; Morita J; Machida K; Suzuki A; Kawata Y
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Kinetic and crystallographic analyses of the catalytic domain of chitinase from Pyrococcus furiosus- the role of conserved residues in the active site.

The FEBS journal
2010-06 | Journal article
Contributors: Tsuji H; Nishimura S; Inui T; Kado Y; Ishikawa K; Nakamura T; Uegaki K
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Growth of large protein crystals by a large-scale hanging-drop method

Journal of Applied Crystallography
2010-05 | Journal article
Part of ISSN: 0021-8898
Contributors: Keisuke Kakinouchi; Tsutomu Nakamura; Taro Tamada; Hiroaki Adachi; Shigeru Sugiyama; Mihoko Maruyama; Yoshinori Takahashi; Kazufumi Takano; Satoshi Murakami; Tsuyoshi Inoue et al.
Source: Self-asserted source
Tsutomu Nakamura via Crossref Metadata Search

Crystal structure of peroxiredoxin from Aeropyrum pernix K1 complexed with its substrate, hydrogen peroxide.

Journal of biochemistry
2010-01 | Journal article
Contributors: Nakamura T; Kado Y; Yamaguchi T; Matsumura H; Ishikawa K; Inoue T
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Mass Spectrometric Analysis Using Ruthenium (II)-Labeling for Identification of Glycosyl Hydrolase Product

Bioscience, Biotechnology, and Biochemistry
2009-02-23 | Journal article
Part of ISSN: 0916-8451
Part of ISSN: 1347-6947
Source: Self-asserted source
Tsutomu Nakamura

Tertiary structure and carbohydrate recognition by the chitin-binding domain of a hyperthermophilic chitinase from Pyrococcus furiosus.

Journal of molecular biology
2008-09 | Journal article
Contributors: Nakamura T; Mine S; Hagihara Y; Ishikawa K; Ikegami T; Uegaki K
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate.

Proceedings of the National Academy of Sciences of the United States of America
2008-04 | Journal article
Contributors: Nakamura T; Yamamoto T; Abe M; Matsumura H; Hagihara Y; Goto T; Yamaguchi T; Inoue T
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

The first crystal structure of L-threonine dehydrogenase.

Journal of molecular biology
2007-02 | Journal article
Contributors: Ishikawa K; Higashi N; Nakamura T; Matsuura T; Nakagawa A
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Structure of the catalytic domain of the hyperthermophilic chitinase from Pyrococcus furiosus.

Acta crystallographica. Section F, Structural biology and crystallization communications
2007-01 | Journal article
Contributors: Nakamura T; Mine S; Hagihara Y; Ishikawa K; Uegaki K
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

NMR assignment of the chitin-binding domain of a hyperthermophilic chitinase from Pyrococcus furiosus.

Journal of biomolecular NMR
2006 | Journal article
Contributors: Mine S; Nakamura T; Hagihara Y; Ishikawa K; Ikegami T; Uegaki K
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Crystallization and X-ray diffraction analysis of a catalytic domain of hyperthermophilic chitinase from Pyrococcus furiosus.

Acta crystallographica. Section F, Structural biology and crystallization communications
2006-08 | Journal article
Contributors: Mine S; Nakamura T; Hirata K; Ishikawa K; Hagihara Y; Uegaki K
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Crystal structure of thioredoxin peroxidase from aerobic hyperthermophilic archaeon Aeropyrum pernix K1.

Proteins
2006-03 | Journal article
Contributors: Nakamura T; Yamamoto T; Inoue T; Matsumura H; Kobayashi A; Hagihara Y; Uegaki K; Ataka M; Kai Y; Ishikawa K
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Identification of the region responsible for fibril formation in the CAD domain of caspase-activated DNase.

Journal of biochemistry
2005-12 | Journal article
Contributors: Nakamura T; Kobayashi A; Hagihara Y; Takai T; Mine S; Yamazaki T; Yumoto N; Uegaki K
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Amyloid fibril formation by the CAD domain of caspase-activated DNase.

Biopolymers
2005-09 | Journal article
Contributors: Uegaki K; Nakamura T; Yamamoto H; Kobayashi A; Odahara T; Harata K; Hagihara Y; Ueyama N; Yamazaki T; Yumoto N
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Crystallization and preliminary X-ray diffraction analysis of a chitin-binding domain of hyperthermophilic chitinase from Pyrococcus furiosus.

Acta crystallographica. Section F, Structural biology and crystallization communications
2005-05 | Journal article
Contributors: Nakamura T; Ishikawa K; Hagihara Y; Oku T; Nakagawa A; Inoue T; Ataka M; Uegaki K
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Crystallization and preliminary X-ray diffraction analysis of thioredoxin peroxidase from the aerobic hyperthermophilic archaeon Aeropyrum pernix K1.

Acta crystallographica. Section F, Structural biology and crystallization communications
2005-03 | Journal article
Contributors: Nakamura T; Matsumura H; Inoue T; Kai Y; Uegaki K; Hagihara Y; Ataka M; Ishikawa K
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Screening for stable mutants with amino acid pairs substituted for the disulfide bond between residues 14 and 38 of bovine pancreatic trypsin inhibitor (BPTI).

The Journal of biological chemistry
2002-12 | Journal article
Contributors: Hagihara Y; Shiraki K; Nakamura T; Uegaki K; Takagi M; Imanaka T; Yumoto N
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Thermostable and active phosphoenolpyruvate carboxylase from Thermus sp. even after proteolytic cleavage

Journal of Molecular Catalysis B: Enzymatic
2002-06 | Journal article
Part of ISSN: 1381-1177
Source: Self-asserted source
Tsutomu Nakamura

Systematic circular permutation of an entire protein reveals essential folding elements.

Nature structural biology
2000-07 | Journal article
Contributors: Iwakura M; Nakamura T; Yamane C; Maki K
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Circular permutation analysis as a method for distinction of functional elements in the M20 loop of Escherichia coli dihydrofolate reductase.

The Journal of biological chemistry
1999-07 | Journal article
Contributors: Nakamura T; Iwakura M
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Topological mutation of Escherichia coli dihydrofolate reductase.

Journal of biochemistry
1998-10 | Journal article
PMID: 9756622
Contributors: Iwakura M; Takenawa T; Nakamura T
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Effects of the length of a glycine linker connecting the N-and C-termini of a circularly permuted dihydrofolate reductase.

Protein engineering
1998-08 | Journal article
PMID: 9749924
Contributors: Iwakura M; Nakamura T
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Phosphoenolpyruvate carboxylase of Thermus sp.: role of a divergent glycine-rich region

Biotechnology Letters
1997 | Journal article
Source: Self-asserted source
Tsutomu Nakamura

Purification and characterization of recombinant phosphoenolpyruvate carboxylase of Thermus sp.

Journal of biochemistry
1996-09 | Journal article
PMID: 8902615
Contributors: Nakamura T; Minoguchi S; Izui K
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Cloning and sequence analysis of the gene for phosphoenolpyruvate carboxylase from an extreme thermophile, Thermus sp.

Journal of biochemistry
1995-08 | Journal article
PMID: 8543565
Contributors: Nakamura T; Yoshioka I; Takahashi M; Toh H; Izui K
Source: Self-asserted source
Tsutomu Nakamura via Europe PubMed Central

Peer review (1 review for 1 publication/grant)

Review activity for Nature communications (1)