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ChatGPT 4.0--friend or foe?

2024 | Journal article
Contributors: Knapp, Bernhard
Source: Self-asserted source
Bernhard Knapp

ChatGPT--Freund oder Feind?

2024 | Journal article
Contributors: Knapp, Bernhard
Source: Self-asserted source
Bernhard Knapp

ChatGPT as a medical doctor? A diagnostic accuracy study on common and rare diseases

medRxiv
2023 | Journal article
Contributors: Mehnen, Lars; Gruarin, Stefanie; Vasileva, Mina; Knapp, Bernhard
Source: Self-asserted source
Bernhard Knapp

Correlating global trends in COVID-19 cases with online symptom checker self-assessments

Plos one
2023 | Journal article
Contributors: Zobel, Marc; Knapp, Bernhard; Nateqi, Jama; Martin, Alistair
Source: Self-asserted source
Bernhard Knapp

Short-term incentives of research evaluations: Evidence from the UK Research Excellence Framework

Research Policy
2023 | Journal article
Contributors: Groen-Xu, Moqi; Bös, Gregor; Teixeira, Pedro A; Voigt, Thomas; Knapp, Bernhard
Source: Self-asserted source
Bernhard Knapp

Symptoms associated with a COVID-19 infection among a non-hospitalized cohort in Vienna

Wiener Klinische Wochenschrift
2022 | Journal article
Contributors: Munsch, Nicolas; Gruarin, Stefanie; Nateqi, Jama; Lutz, Thomas; Binder, Michael; Aberle, Judith H; Martin, Alistair; Knapp, Bernhard
Source: Self-asserted source
Bernhard Knapp

Why Many Molecular Simulation Research Findings Might Be False: An Analysis of Inter-Simulations Differences Based on Simulation Time and Number of Replicas

bioRxiv
2022 | Journal article
Contributors: Knapp, Bernhard; Deane, Charlotte M
Source: Self-asserted source
Bernhard Knapp

Authors’ Reply to: Screening Tools: Their Intended Audiences and Purposes. Comment on “Diagnostic Accuracy of Web-Based COVID-19 Symptom Checkers: Comparison Study”

Journal of Medical Internet Research
2021 | Journal article
Contributors: Munsch, Nicolas; Martin, Alistair; Gruarin, Stefanie; Nateqi, Jama; Abdarahmane, Isselmou; Weingartner-Ortner, Rafael; Knapp, Bernhard; others
Source: Self-asserted source
Bernhard Knapp

COVID-19 symptom frequency comparison: non-hospitalised positively and negatively tested persons with flu-like symptoms in Austria

medRxiv
2021 | Journal article
Contributors: Munsch, Nicolas; Gruarin, Stefanie; Martin, Alistair; Nateqi, Jama; Lutz, Thomas; Binder, Michael; Aberle, Judith H; Knapp, Bernhard
Source: Self-asserted source
Bernhard Knapp

How research evaluations can damage scientific quality: 23 years of evidence from the UK Research Excellence Framework

Available at SSRN 3083692
2021 | Journal article
Contributors: Groen-Xu, Moqi; Boes, Gregor; Teixeira, Pedro A; Voigt, Thomas; Knapp, Bernhard
Source: Self-asserted source
Bernhard Knapp

A benchmark of online COVID-19 symptom checkers

medRxiv
2020 | Journal article
Contributors: Munsch, Nicolas; Martin, Alistair; Gruarin, Stefanie; Nateqi, Jama; Abdarahmane, Isselmou; Weingartner-Ortner, Rafael; Knapp, Bernhard
Source: Self-asserted source
Bernhard Knapp

An artificial intelligence-based first-line defence against COVID-19: digitally screening citizens for risks via a chatbot

Scientific reports
2020 | Journal article
Contributors: Martin, Alistair; Nateqi, Jama; Gruarin, Stefanie; Munsch, Nicolas; Abdarahmane, Isselmou; Zobel, Marc; Knapp, Bernhard
Source: Self-asserted source
Bernhard Knapp

CD4 T Cell Determinants in West Nile Virus Disease and Asymptomatic Infection

Frontiers in Immunology
2020 | Journal article
Contributors: Koblischke, Maximilian; Spitzer, Felicia S; Florian, David M; Aberle, Stephan W; Malafa, Stefan; Fae, Ingrid; Cassaniti, Irene; Jungbauer, Christof; Knapp, Bernhard; Laferl, Hermann et al.
Source: Self-asserted source
Bernhard Knapp

Diagnostic accuracy of web-based COVID-19 symptom checkers: comparison study

Journal of medical Internet research
2020 | Journal article
Contributors: Munsch, Nicolas; Martin, Alistair; Gruarin, Stefanie; Nateqi, Jama; Abdarahmane, Isselmou; Weingartner-Ortner, Rafael; Knapp, Bernhard
Source: Self-asserted source
Bernhard Knapp

Predicting Global Trends in COVID-19 Cases Via Online Symptom Checkers Self-Assessments

Available at SSRN 3729913
2020 | Journal article
Contributors: Zobel, Marc; Martin, Alistair; Nateqi, Jama; Knapp, Bernhard
Source: Self-asserted source
Bernhard Knapp

Predicting Global Trends in COVID-19 Cases Via Online Symptom Checkers Self-Assessments (preprint)

2020 | Journal article
Contributors: Zobel, Marc; Martin, Alistair; Nateqi, Jama; Knapp, Bernhard
Source: Self-asserted source
Bernhard Knapp

HLA-DM Stabilizes the Empty MHCII Binding Groove: A Model Using Customized Natural Move Monte Carlo

Journal of Chemical Information and Modeling
2019 | Journal article
Contributors: Demharter, Samuel; Knapp, Bernhard; Deane, Charlotte; Minary, Peter
Source: Self-asserted source
Bernhard Knapp

How peptide/MHC presence affects the dynamics of the LC13 T-cell receptor

Scientific Reports
2019 | Journal article
Contributors: Dominguez, Jose Luis; Knapp, Bernhard
Source: Self-asserted source
Bernhard Knapp

MHC binding affects the dynamics of different T-cell receptors in different ways

Plos Computational Biology
2019 | Journal article
Contributors: Knapp, Bernhard; van der Merwe, P Anton; Dushek, Omer; Deane, Charlotte M
Source: Self-asserted source
Bernhard Knapp

Proteomic identification of a marker signature for MAPK i resistance in melanoma

The EMBO journal
2019 | Journal article
Contributors: Paulitschke, Verena; Eichhoff, Ossia; Gerner, Christopher; Paulitschke, Philipp; Bileck, Andrea; Mohr, Thomas; Cheng, Phil F; Leitner, Alexander; Guenova, Emmanuella; Saulite, Ieva et al.
Source: Self-asserted source
Bernhard Knapp

Avoiding false positive conclusions in molecular simulation: the importance of replicas

Journal of Chemical Theory and Computation
2018 | Journal article
Contributors: Knapp, Bernhard; Ospina, Luis; Deane, Charlotte M
Source: Self-asserted source
Bernhard Knapp

Computational Research in T-Cell Receptor/Peptide/Major Histocompatibility Complex Interaction and Immunoinformatics

Peptide/Major Histocompatibility Complex Interaction and Immunoinformatics (February 15, 2018)
2018 | Journal article
Contributors: Knapp, Bernhard
Source: Self-asserted source
Bernhard Knapp

Diez reglas sencillas para una exitosa colaboración transdisciplinar

TransJus Working Papers; 4/2018
2018 | Journal article
Contributors: Knapp, Bernhard; Bardenet, Rémi; Bernabeu, Miguel O; Bordas, Rafel; Bruna, Maria; Calderhead, Ben; Cooper, Jonathan; Fletcher, Alexander G; Groen, Derek; Kuijper, Bram et al.
Source: Self-asserted source
Bernhard Knapp

In silico structural modeling of multiple epigenetic marks on DNA

Bioinformatics
2018 | Journal article
Contributors: Krawczyk, Konrad; Demharter, Samuel; Knapp, Bernhard; Deane, Charlotte M; Minary, Peter
Source: Self-asserted source
Bernhard Knapp

Looming REF deadlines lead to a rush in publication of lower quality research

Impact of Social Sciences Blog
2018 | Journal article
Contributors: Groen-Xu, Moqi; Teixeira, Pedro; Voigt, Thomas; Knapp, Bernhard
Source: Self-asserted source
Bernhard Knapp

pyHVis3D: Visualising Molecular Simulation deduced H-bond networks in 3D: Application to T-cell receptor interactions

Bioinformatics
2018 | Journal article
Contributors: Knapp, Bernhard; Alcala, Marta; Zhang, Hao; West, Clare E; van der Merwe, P Anton; Deane, Charlotte M
Source: Self-asserted source
Bernhard Knapp

Exploring metabolic configurations of single cells within complex tissue microenvironments

Cell metabolism
2017 | Journal article
Contributors: Miller, Anne; Nagy, Csörsz; Knapp, Bernhard; Laengle, Johannes; Ponweiser, Elisabeth; Groeger, Marion; Starkl, Philipp; Bergmann, Michael; Wagner, Oswald; Haschemi, Arvand
Source: Self-asserted source
Bernhard Knapp

Measurement of the WZ production cross section in pp collisions at [Formula: see text] and 8 [Formula: see text] and search for anomalous triple gauge couplings at [Formula: see text].

The European physical journal. C, Particles and fields
2017 | Journal article
Contributors: Khachatryan, V; Sirunyan, AM; Tumasyan, A; Adam, W; Asilar, E; Bergauer, T; Brandstetter, J; Brondolin, E; Dragicevic, M; Erö, J et al.
Source: Self-asserted source
Bernhard Knapp

Short-Termism in Science: Evidence from the UK Research Excellence Framework

SSRN Electronic Journal
2017 | Journal article
Contributors: Groen-Xu, Moqi; Teixeira, PA; Voigt, Thomas; Knapp, Bernhard
Source: Self-asserted source
Bernhard Knapp

Ten simple rules for surviving an interdisciplinary PhD

PLoS Computational Biology
2017 | Other
Contributors: Demharter, Samuel; Pearce, Nicholas; Beattie, Kylie; Frost, Isabel; Leem, Jinwoo; Martin, Alistair; Oppenheimer, Robert; Regep, Cristian; Rukat, Tammo; Skates, Alexander et al.
Source: Self-asserted source
Bernhard Knapp

Variable regions of antibodies and T-cell Receptors may not be sufficient in molecular simulations investigating binding

Journal of chemical theory and computation
2017 | Journal article
Contributors: Knapp, Bernhard; Dunbar, James; Alcala, Marta; Deane, Charlotte M
Source: Self-asserted source
Bernhard Knapp

Exploring peptide/MHC detachment processes using hierarchical natural move Monte Carlo

Bioinformatics
2016 | Journal article
Contributors: Knapp, Bernhard; Demharter, Samuel; Deane, Charlotte M; Minary, Peter
Source: Self-asserted source
Bernhard Knapp

Modeling functional motions of biological systems by customized natural moves

Biophysical Journal
2016 | Journal article
Contributors: Demharter, Samuel; Knapp, Bernhard; Deane, Charlotte M; Minary, Peter
Source: Self-asserted source
Bernhard Knapp

Modelling functional motions of biological systems by customised natural moves

Biophysical Journal
2016 | Journal article
Contributors: Minary, P; Demharter, S; Knapp, B; Deane, C
Source: Self-asserted source
Bernhard Knapp

Progress and challenges in predicting protein interfaces

Briefings in bioinformatics
2016 | Journal article
Contributors: Esmaielbeiki, Reyhaneh; Krawczyk, Konrad; Knapp, Bernhard; Nebel, Jean-Christophe; Deane, Charlotte M
Source: Self-asserted source
Bernhard Knapp

T-cell receptor binding affects the dynamics of the peptide/MHC-I complex

Journal of Chemical Information and Modeling
2016 | Journal article
Contributors: Knapp, Bernhard; Deane, Charlotte M
Source: Self-asserted source
Bernhard Knapp

Tertiary element interaction in HIV-1 TAR

Journal of Chemical Information and Modeling
2016 | Journal article
Contributors: Krawczyk, Konrad; Sim, Adelene YL; Knapp, Bernhard; Deane, Charlotte M; Minary, Peter
Source: Self-asserted source
Bernhard Knapp

The contribution of major histocompatibility complex contacts to the affinity and kinetics of T cell receptor binding

Scientific Reports
2016 | Journal article
Contributors: Zhang, Hao; Lim, Hong-Sheng; Knapp, Bernhard; Deane, Charlotte M.; Aleksic, Milos; Dushek, Omer; van der Merwe, P. Anton
Source: Self-asserted source
Bernhard Knapp

172 pMHC MD simulations of Knapp et al. 2015

2015 | Journal article
Contributors: Knapp, B
Source: Self-asserted source
Bernhard Knapp

Current status and future challenges in T-cell receptor/peptide/MHC molecular dynamics simulations

Briefings in bioinformatics
2015 | Journal article
Contributors: Knapp, Bernhard; Demharter, Samuel; Esmaielbeiki, Reyhaneh; Deane, Charlotte M
Source: Self-asserted source
Bernhard Knapp

Rapid, precise, and reproducible prediction of peptide--MHC binding affinities from molecular dynamics that correlate well with experiment

Journal of chemical theory and computation
2015 | Journal article
Contributors: Wan, Shunzhou; Knapp, Bernhard; Wright, David W; Deane, Charlotte M; Coveney, Peter V
Source: Self-asserted source
Bernhard Knapp

Ten simple rules for a successful cross-disciplinary collaboration

PLoS Computational Biology
2015 | Other
Contributors: Knapp, Bernhard; Bardenet, Rémi; Bernabeu, Miguel O; Bordas, Rafel; Bruna, Maria; Calderhead, Ben; Cooper, Jonathan; Fletcher, Alexander G; Groen, Derek; Kuijper, Bram et al.
Source: Self-asserted source
Bernhard Knapp

Vemurafenib resistance signature by proteome analysis offers new strategies and rational therapeutic concepts

Molecular cancer therapeutics
2015 | Journal article
Contributors: Paulitschke, Verena; Berger, Walter; Paulitschke, Philipp; Hofstätter, Elisabeth; Knapp, Bernhard; Dingelmaier-Hovorka, Ruth; Födinger, Dagmar; Jäger, Walter; Szekeres, Thomas; Meshcheryakova, Anastasia et al.
Source: Self-asserted source
Bernhard Knapp

Crowdsourcing yields a new standard for kinks in protein helices

Journal of chemical information and modeling
2014 | Journal article
Contributors: Wilman, Henry R; Ebejer, Jean-Paul; Shi, Jiye; Deane, Charlotte M; Knapp, Bernhard
Source: Self-asserted source
Bernhard Knapp

Examining variable domain orientations in antigen receptors gives insight into TCR-like antibody design

PLoS computational biology
2014 | Journal article
Contributors: Dunbar, James; Knapp, Bernhard; Fuchs, Angelika; Shi, Jiye; Deane, Charlotte M
Source: Self-asserted source
Bernhard Knapp

Gro2mat: A package to efficiently read Gromacs output in Matlab

2014 | Other
Contributors: Dien, Hung; Deane, Charlotte M; Knapp, Bernhard
Source: Self-asserted source
Bernhard Knapp

Large scale characterization of the LC13 TCR and HLA-B8 structural landscape in reaction to 172 altered peptide ligands: a molecular dynamics simulation study

PLoS computational biology
2014 | Journal article
Contributors: Knapp, Bernhard; Dunbar, James; Deane, Charlotte M
Source: Self-asserted source
Bernhard Knapp

Specificities of Human CD4+ T cell Responses to an Inactivated Flavivirus Vaccine and Infection: Correlation with Structure and 2 Epitope Prediction 3

2014 | Journal article
Contributors: Schwaiger, Julia; Aberle, Judith H; Stiasny, Karin; Knapp, Bernhard; Schreiner, Wolfgang; Fae, Ingrid; Fischer, Gottfried; Scheinost, Ondrej; Chmelik, Vaclav; Heinz, Franz X
Source: Self-asserted source
Bernhard Knapp

Specificities of human CD4+ T cell responses to an inactivated flavivirus vaccine and infection: correlation with structure and epitope prediction

Journal of virology
2014 | Journal article
Contributors: Schwaiger, Julia; Aberle, Judith H; Stiasny, Karin; Knapp, Bernhard; Schreiner, Wolfgang; Fae, Ingrid; Fischer, Gottfried; Scheinost, Ondrej; Chmelik, Vaclav; Heinz, Franz X
Source: Self-asserted source
Bernhard Knapp

Ten simple rules for effective computational research

PLoS Computational Biology
2014 | Journal article
Contributors: Osborne, James M; Bernabeu, Miguel O; Bruna, Maria; Calderhead, Ben; Cooper, Jonathan; Dalchau, Neil; Dunn, Sara-Jane; Fletcher, Alexander G; Freeman, Robin; Groen, Derek et al.
Source: Self-asserted source
Bernhard Knapp
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