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Scopus Author ID: 57192554101

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Employment (2)

Sage Bionetworks: Seattle, WA, US

2022-02-01 to present | Associate Director of Data Processing & Engineering (Data & Tooling)
Employment
Source: Self-asserted source
Thomas Yu

Sage Bionetworks: Seattle, Washington, US

2021-02-01 to 2022-02-01 | Senior Bioinformatics Engineer (Informatics & Biocomputing)
Employment
Source: Self-asserted source
Thomas Yu

Education and qualifications (1)

University of Washington: Seattle, WA, US

2010-09-25 to 2014-12-18 | BS (Applied Mathematics)
Education
Source: Self-asserted source
Thomas Yu

Works (23)

A Scalable Quality Assurance Process for Curating Oncology Electronic Health Records: The Project GENIE Biopharma Collaborative Approach

JCO Clinical Cancer Informatics
2022-02 | Journal article
DOI: 10.1200/cci.21.00105
Part of ISSN: 2473-4276
Source: Self-asserted source
Thomas Yu

A Continuously Benchmarked and Crowdsourced Challenge for Rapid Development and Evaluation of Models to Predict COVID-19 Diagnosis and Hospitalization

JAMA Network Open
2021-10 | Journal article
DOI: 10.1001/jamanetworkopen.2021.24946
Part of ISSN: 2574-3805
Source: Self-asserted source
Thomas Yu

A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery

Cell Systems
2021-06 | Journal article
DOI: 10.1016/j.cels.2021.05.021
Part of ISSN: 2405-4712
Source: Self-asserted source
Thomas Yu

Crowdsourcing assessment of maternal blood multi-omics for predicting gestational age and preterm birth

Cell Reports Medicine
2021-06 | Journal article
DOI: 10.1016/j.xcrm.2021.100323
Part of ISSN: 2666-3791
Source: Self-asserted source
Thomas Yu

Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data

Life Science Alliance
2020-11 | Journal article
DOI: 10.26508/lsa.202000867
Part of ISSN: 2575-1077
Source: Self-asserted source
Thomas Yu

Key Parameters of Tumor Epitope Immunogenicity Revealed Through a Consortium Approach Improve Neoantigen Prediction

Cell
2020-10 | Journal article
DOI: 10.1016/j.cell.2020.09.015
Part of ISSN: 0092-8674
Source: Self-asserted source
Thomas Yu

Linked Entity Attribute Pair (LEAP): A Harmonization Framework for Data Pooling

JCO Clinical Cancer Informatics
2020-08 | Journal article
DOI: 10.1200/cci.20.00037
Part of ISSN: 2473-4276
Source: Self-asserted source
Thomas Yu

Piloting a model-to-data approach to enable predictive analytics in health care through patient mortality prediction

Journal of the American Medical Informatics Association
2020-07-08 | Journal article
DOI: 10.1093/jamia/ocaa083
Part of ISSN: 1067-5027
Part of ISSN: 1527-974X
Source: Self-asserted source
Thomas Yu

Evaluation of Combined Artificial Intelligence and Radiologist Assessment to Interpret Screening Mammograms

JAMA Network Open
2020-03-02 | Journal article
DOI: 10.1001/jamanetworkopen.2020.0265
Part of ISSN: 2574-3805
Source: Self-asserted source
Thomas Yu

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

Nature Communications
2019-12 | Journal article
DOI: 10.1038/s41467-019-09799-2
Part of ISSN: 2041-1723
Source: Self-asserted source
Thomas Yu

Reproducible biomedical benchmarking in the cloud: lessons from crowd-sourced data challenges

Genome Biology
2019-12 | Journal article
DOI: 10.1186/s13059-019-1794-0
Part of ISSN: 1474-760X
Source: Self-asserted source
Thomas Yu

Crowdsourced High-Risk Classifiers for Multiple Myeloma Patients Commonly Identify PHF19 As a Robust Progression Biomarker

Blood
2019-11-13 | Journal article
DOI: 10.1182/blood-2019-127362
Part of ISSN: 0006-4971
Part of ISSN: 1528-0020
Source: Self-asserted source
Thomas Yu

Leveraging crowdsourcing to accelerate global health solutions

Nature Biotechnology
2019-08 | Journal article
DOI: 10.1038/s41587-019-0180-5
Part of ISSN: 1087-0156
Part of ISSN: 1546-1696
Source: Self-asserted source
Thomas Yu

Abstract 1690: A tumor deconvolution DREAM Challenge: Inferring immune infiltration from bulk gene expression data

Molecular and Cellular Biology / Genetics
2019-07-01 | Journal article
DOI: 10.1158/1538-7445.am2019-1690
Source: Self-asserted source
Thomas Yu

A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection

Nature Communications
2018-12 | Journal article
DOI: 10.1038/s41467-018-06735-8
Part of ISSN: 2041-1723
Source: Self-asserted source
Thomas Yu
grade
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Semantic workflows for benchmark challenges: Enhancing comparability, reusability and reproducibility

Biocomputing 2019
2018-11 | Journal article
DOI: 10.1142/9789813279827_0019
ISBN: 9789813279810
ISBN: 9789813279827
Source: Self-asserted source
Thomas Yu

Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open clinical trial data

The Lancet Oncology
2017 | Journal article
DOI: 10.1016/S1470-2045(16)30560-5
EID:

2-s2.0-85006765760
Contributors: Guinney, J.; Wang, T.; Laajala, T.D.; Winner, K.K.; Bare, J.C.; Neto, E.C.; Khan, S.A.; Peddinti, G.; Airola, A.; Pahikkala, T. et al.
Source: Self-asserted source
Thomas Yu via Scopus - Elsevier

A high-throughput molecular data resource for cutaneous neurofibromas

Scientific Data
2017-12 | Journal article
DOI: 10.1038/sdata.2017.45
Part of ISSN: 2052-4463
Source: Self-asserted source
Thomas Yu

A DREAM Challenge to Build Prediction Models for Short-Term Discontinuation of Docetaxel in Metastatic Castration-Resistant Prostate Cancer

JCO Clinical Cancer Informatics
2017-11 | Journal article
DOI: 10.1200/cci.17.00018
Part of ISSN: 2473-4276
Source: Self-asserted source
Thomas Yu

AACR Project GENIE: Powering Precision Medicine through an International Consortium

Cancer Discovery
2017-08 | Journal article
DOI: 10.1158/2159-8290.cd-17-0151
Part of ISSN: 2159-8274
Part of ISSN: 2159-8290
Source: Self-asserted source
Thomas Yu

Abstract 4725: Multiple Myeloma DREAM Challenge: A crowd-sourced challenge to improve identification of high-risk patients

Clinical Research (Excluding Clinical Trials)
2017-07-01 | Conference abstract
DOI: 10.1158/1538-7445.am2017-4725
Source: Self-asserted source
Thomas Yu

Abstract 772: The molecular landscape of dermal neurofibromatosis

Bioinformatics and Systems Biology
2016-07-15 | Journal article
DOI: 10.1158/1538-7445.am2016-772
Source: Self-asserted source
Thomas Yu

Reducing overfitting in challenge-based competitions

2016-07-01 | Preprint
ARXIV: arXiv:1607.00091v1
Source: Self-asserted source
Thomas Yu
How many people are using ORCID?