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Systems Biology, Plant Nutrition, Nitrate signaling
Chile

Biography

I pioneered the combined use of classical experimental biology, functional genomics and bioinformatics approaches to unravel molecular mechanisms of plant form and function. I recognized early in my career that data organization, integration and analysis would be a major challenge for experimental biologists. It was also clear to me that a holistic view of molecular processes was needed to understand biological systems. In an effort to contribute to these challenges, I developed bioinformatics skills to create tools that facilitate data integration and analysis and enable plant systems biology research. Iteratively combining bioinformatics tools with functional genomics and classical molecular genetics approaches I have discovered important molecular mechanisms plants utilize to respond to changes in nitrogen (N) nutrient availability using Arabidopsis as a model system. In addition, my holistic approach has allowed connecting processes that have been classically studied independently (e.g. plant nutrition and circadian rhythms, plant nutrition and hormone signaling). I have started a strong and productive plant systems biology research program in Chile to understand mechanisms and regulatory network functions in the plant response to N nutrient/metabolites. This is essential for developing strategies that intervene in molecular networks for biotechnological purposes such as improving N use efficiency in plants or modifying the amino acid content of seeds, which are important issues for health, agriculture and human nutrition. It is of paramount importance for modern agriculture to improve crop N use efficiency as world population, food needs and crop use diversification (e.g. for biofuel production) will continue to increase.

Activities

Professional activities (1)

Faculty Opinions: London, GB

2019-01-04 to 2022-08-09 | Faculty Member
Invited position
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Faculty Opinions

Works (50 of 111)

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Page 1 of 3

Rhizochemistry and soil bacterial community are tailored to natural stress gradients

Soil Biology and Biochemistry
2025-03 | Journal article
Contributors: Thomas Dussarrat; Claudio Latorre; Millena C. Barros Santos; Constanza Aguado-Norese; Sylvain Prigent; Francisca P. Díaz; Dominique Rolin; Mauricio González; Caroline Müller; Rodrigo A. Gutiérrez et al.
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Effect of temperature on circadian clock functioning of trees in the context of global warming

New Phytologist
2025-01-08 | Journal article
Contributors: Maximiliano Estravis‐Barcala; Sofía Gaischuk; Marina Gonzalez‐Polo; Alejandro Martinez‐Meier; Rodrigo A. Gutiérrez; Marcelo J. Yanovsky; Nicolás Bellora; María Verónica Arana
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The Characterization of a Novel PrMADS11 Transcription Factor from Pinus radiata Induced Early in Bent Pine Stem

International Journal of Molecular Sciences
2024-06-30 | Journal article
Contributors: Tamara Méndez; Joselin Guajardo; Nicolás Cruz; Rodrigo A. Gutiérrez; Lorena Norambuena; Andrea Vega; María A. Moya-León; Raúl Herrera
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Nitrogen sensing and regulatory networks: it's about time and space

The Plant Cell
2024-05-01 | Journal article
Contributors: Carly M Shanks; Karin Rothkegel; Matthew D Brooks; Chia-Yi Cheng; José M Alvarez; Sandrine Ruffel; Gabriel Krouk; Rodrigo A Gutiérrez; Gloria M Coruzzi
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Crossref

Effect of temperature on circadian clock functioning of trees in the context of global warming

2024-03-27 | Preprint
Contributors: Maximiliano Estravis-Barcala; Sofía Gaischuk; Marina Gonzalez-Polo; Alejandro Martínez-Meier; Rodrigo A. Gutiérrez; Marcelo Yanovsky; Nicolás Bellora; María Verónica Arana
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Crossref

Phylogenetically diverse wild plant species use common biochemical strategies to thrive in the Atacama Desert

2024-03-12 | Other
Contributors: Rodrigo A Gutierrez; Thomas Dussarrat; Ricardo Nilo-Poyanco; Tomas C. Moyano; Sylvain Prigent; Tim L. Jeffers; Francisca P. Diaz; Guillaume Decros; Lauren Audi; Veronica M. Sondervan et al.
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Crossref

Convergent and divergent responses of the rhizosphere chemistry and bacterial communities to a stress gradient in the Atacama Desert

2023-10-19 | Preprint
Contributors: Thomas Dussarrat; Claudio Latorre; Millena C. Barros Santos; Constanza Aguado-Norese; Sylvain Prigent; Francisca P. Díaz; Dominique Rolin; Mauricio González; Caroline Müller; Rodrigo A Gutiérrez et al.
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Crossref

PIF4 enhances the expression of SAUR genes to promote growth in response to nitrate

Proceedings of the National Academy of Sciences
2023-09-26 | Journal article
Contributors: Matías Ezequiel Pereyra; Cecilia Costigliolo Rojas; Anne F. Jarrell; Austin S. Hovland; Stephen A. Snipes; Punita Nagpal; David Alabadí; Miguel A. Blázquez; Rodrigo A. Gutiérrez; Jason W. Reed et al.
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Crossref

Characterization of the signalling pathways involved in the repression of root nitrate uptake by nitrate in Arabidopsis thaliana

Journal of Experimental Botany
2023-08-03 | Journal article
Contributors: Valentin Chaput; Jianfu Li; David Séré; Pascal Tillard; Cécile Fizames; Tomas Moyano; Kaijing Zuo; Antoine Martin; Rodrigo A Gutiérrez; Alain Gojon et al.
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Crossref

Signaling pathways involved in the repression of root nitrate uptake by nitrate inArabidopsis thaliana

2022-10-10 | Preprint
Contributors: Valentin Chaput; Jianfu Li; David Séré; Pascal Tillard; Cécile Fizames; Tomas Moyano; Kaijing Zuo; Antoine Martin; Rodrigo A. Gutiérrez; Alain Gojon et al.
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Crossref

Partners to survive: Hoffmannseggia doellii root‐associated microbiome at the Atacama Desert

New Phytologist
2022-06 | Journal article
Contributors: Jonathan E. Maldonado; Alexis Gaete; Dinka Mandakovic; Constanza Aguado‐Norese; Melissa Aguilar; Rodrigo A. Gutiérrez; Mauricio González
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Crossref

Dynamic changes in mRNA nucleocytoplasmic localization in the nitrate response of Arabidopsis roots

2022-01-09 | Preprint
Contributors: Alejandro Fonseca; Tomás C. Moyano; Stefanie Rosa; Rodrigo A. Gutiérrez
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Crossref

Nitrate triggered phosphoproteome changes and a PIN2 phosphosite modulating root system architecture

EMBO reports
2021-09-06 | Journal article
Contributors: Andrea Vega; Isabel Fredes; José O’Brien; Zhouxin Shen; Krisztina Ötvös; Rashed Abualia; Eva Benkova; Steven P Briggs; Rodrigo A Gutiérrez
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Crossref

Genome-wide analysis in response to nitrogen and carbon identifies regulators for root AtNRT2 transporters

Plant Physiology
2021-05-27 | Journal article
Contributors: Sandrine Ruffel; Valentin Chaput; Jonathan Przybyla-Toscano; Ian Fayos; Catalina Ibarra; Tomas Moyano; Cécile Fizames; Pascal Tillard; Jose Antonio O’Brien; Rodrigo A Gutiérrez et al.
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Crossref

TGA class II transcription factors are essential to restrict oxidative stress in response to UV-B stress in Arabidopsis

Journal of Experimental Botany
2021-02-27 | Journal article
Contributors: Ariel Herrera-Vásquez; Alejandro Fonseca; José Manuel Ugalde; Liliana Lamig; Aldo Seguel; Tomás C Moyano; Rodrigo A Gutiérrez; Paula Salinas; Elena A Vidal; Loreto Holuigue et al.
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Crossref

Revealing hidden plant diversity in arid environments

Ecography
2021-01 | Journal article
Contributors: Gabriela Carrasco‐Puga; Francisca P. Díaz; Daniela C. Soto; Catalina Hernández‐Castro; Orlando Contreras‐López; Antonio Maldonado; Claudio Latorre; Rodrigo A. Gutiérrez
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Crossref

A simple RNA preparation method for SARS-CoV-2 detection by RT-qPCR

Scientific Reports
2020-12 | Journal article
Part of ISSN: 2045-2322
Source: Self-asserted source
Rodrigo A. Gutierrez

Transcriptomic profiles reveal differences in zinc metabolism, inflammation, and tight junction proteins in duodenum from cholesterol gallstone subjects

Scientific Reports
2020-12 | Journal article
Part of ISSN: 2045-2322
Source: Self-asserted source
Rodrigo A. Gutierrez

Downregulation of the Polycomb-Associated Methyltransferase Ezh2 during Maturation of Hippocampal Neurons Is Mediated by MicroRNAs Let-7 and miR-124

International Journal of Molecular Sciences
2020-11-11 | Journal article
Contributors: Laura Guajardo; Rodrigo Aguilar; Fernando J. Bustos; Gino Nardocci; Rodrigo A. Gutiérrez; Brigitte van Zundert; Martin Montecino
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BrumiR: A toolkit forde novodiscovery of microRNAs from sRNA-seq data

2020-08-07 | Preprint
Contributors: Carol Moraga; Evelyn Sanchez; Mariana Galvão Ferrarini; Rodrigo A. Gutierrez; Elena A. Vidal; Marie-France Sagot
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Crossref

Nitrate in 2020: Thirty Years from Transport to Signaling Networks

The Plant Cell
2020-07 | Journal article
Part of ISSN: 1040-4651
Part of ISSN: 1532-298X
Source: Self-asserted source
Rodrigo A. Gutierrez

Arabidopsis thalianainteraction withEnsifer melilotican support plant growth under N-deficiency

2020-07-26 | Preprint
Contributors: Grace Armijo; Tatiana Kraiser; María P. Medina; Diana E. Gras; Ana Zúñiga; Bernardo González; Rodrigo A. Gutiérrez
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Crossref

Nitrate Defines Shoot Size through Compensatory Roles for Endoreplication and Cell Division in Arabidopsis thaliana

Current Biology
2020-06 | Journal article
Part of ISSN: 0960-9822
Source: Self-asserted source
Rodrigo A. Gutierrez

Phosphoproteomics after nitrate treatments reveal an important role for PIN2 phosphorylation in control of root system architecture

2020-06-23 | Preprint
Contributors: Andrea Vega; Isabel Fredes; José O’Brien; Zhouxin Shen; Krisztina Ötvös; Eva Benkova; Steven P. Briggs; Rodrigo A. Gutiérrez
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Crossref

Nutrient dose-responsive transcriptome changes driven by Michaelis–Menten kinetics underlie plant growth rates

Proceedings of the National Academy of Sciences
2020-06-09 | Journal article
Contributors: Joseph Swift; Jose M. Alvarez; Viviana Araus; Rodrigo A. Gutiérrez; Gloria M. Coruzzi
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Crossref

Transcription factor TGA2 is essential for UV-B stress tolerance controlling oxidative stress in Arabidopsis

2020-05-27 | Other
Contributors: Ariel Herrera-Vásquez; Alejandro Fonseca; José Manuel Ugalde; Liliana Lamig; Aldo Seguel; Tomás C. Moyano; Rodrigo A. Gutiérrez; Paula Salinas; Elena A. Vidal; Loreto Holuigue
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Crossref

Copy number variants in lipid metabolism genes are associated with gallstones disease in men

European Journal of Human Genetics
2020-02 | Journal article
Part of ISSN: 1018-4813
Part of ISSN: 1476-5438
Source: Self-asserted source
Rodrigo A. Gutierrez

Nitrate Induction of Primary Root Growth Requires Cytokinin Signaling in Arabidopsis thaliana

Plant and Cell Physiology
2020-02-01 | Journal article
Part of ISSN: 0032-0781
Part of ISSN: 1471-9053
Source: Self-asserted source
Rodrigo A. Gutierrez

Ancient parasite DNA from late Quaternary Atacama Desert rodent middens

Quaternary Science Reviews
2019-12 | Journal article
Part of ISSN: 0277-3791
Source: Self-asserted source
Rodrigo A. Gutierrez

Induction of PrMADS10 on the lower side of bent pine tree stems: potential role in modifying plant cell wall properties and wood anatomy

Scientific Reports
2019-12 | Journal article
Part of ISSN: 2045-2322
Source: Self-asserted source
Rodrigo A. Gutierrez
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Preferred source (of 2)‎

Local Changes in Chromatin Accessibility and Transcriptional Networks Underlying the Nitrate Response in Arabidopsis Roots

Molecular Plant
2019-12 | Journal article
Part of ISSN: 1674-2052
Source: Self-asserted source
Rodrigo A. Gutierrez

Nitrate and hormonal signaling crosstalk for plant growth and development

Current Opinion in Plant Biology
2019-12 | Journal article
Part of ISSN: 1369-5266
Source: Self-asserted source
Rodrigo A. Gutierrez

Variants in ABCG8 and TRAF3 genes confer risk for gallstone disease in admixed Latinos with Mapuche Native American ancestry

Scientific Reports
2019-12 | Journal article
Part of ISSN: 2045-2322
Source: Self-asserted source
Rodrigo A. Gutierrez

Whole Genome Sequence, Variant Discovery and Annotation in Mapuche-Huilliche Native South Americans

Scientific Reports
2019-12 | Journal article
Part of ISSN: 2045-2322
Source: Self-asserted source
Rodrigo A. Gutierrez

Genome-wide Analysis In Response to N and C Identifies New Regulators for root AtNRT2 Transporters

2019-10-30 | Other
Contributors: Sandrine Ruffel; Valentin Chaput; Jonathan Przybyla-Toscano; Ian Fayos; Catalina Ibarra; Tomas Moyano; Cécile Fizames; Pascal Tillard; Jose Antonio O’Brien; Rodrigo A. Gutiérrez et al.
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Crossref

iPlant Systems Biology (iPSB): An International Network Hub in the Plant Community

Molecular Plant
2019-06 | Journal article
Part of ISSN: 1674-2052
Source: Self-asserted source
Rodrigo A. Gutierrez

Multiscale climate change impacts on plant diversity in the Atacama Desert

Global Change Biology
2019-05 | Journal article
Contributors: Francisca P. Díaz; Claudio Latorre; Gabriela Carrasco‐Puga; Jamie R. Wood; Janet M. Wilmshurst; Daniela C. Soto; Theresa L. Cole; Rodrigo A. Gutiérrez
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Crossref

Loop assembly: a simple and open system for recursive fabrication of DNA circuits

New Phytologist
2019-04 | Journal article
Part of ISSN: 0028-646X
Part of ISSN: 1469-8137
Source: Self-asserted source
Rodrigo A. Gutierrez

Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions

Nature Communications
2019-04-05 | Journal article
Contributors: Matthew D. Brooks; Jacopo Cirrone; Angelo V. Pasquino; Jose M. Alvarez; Joseph Swift; Shipra Mittal; Che-Lun Juang; Kranthi Varala; Rodrigo A. Gutiérrez; Gabriel Krouk et al.
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Crossref

Nitrate signaling and the control of Arabidopsis growth and development

Current Opinion in Plant Biology
2019-02 | Journal article
Part of ISSN: 1369-5266
Source: Self-asserted source
Rodrigo A. Gutierrez

Bacterial communities associated to Chilean altiplanic native plants from the Andean grasslands soils

Scientific Reports
2019-01-31 | Journal article
Contributors: Beatriz Fernández-Gómez; Jonathan Maldonado; Dinka Mandakovic; Alexis Gaete; Rodrigo A. Gutiérrez; Alejandro Maass; Veronica Cambiazo; Mauricio González
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Crossref

The ambivalent regulator: the construction of a regulatory style for genetically modified crops in Chile

Tapuya: Latin American Science, Technology and Society
2019-01-01 | Journal article
Contributors: Maite P. Salazar; Daniel Valenzuela; Manuel Tironi; Rodrigo A. Gutiérrez
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Crossref

Step-by-Step Construction of Gene Co-expression Networks from High-Throughput Arabidopsis RNA Sequencing Data

Methods in Molecular Biology
2018 | Book chapter
Part of ISBN: 9781493977468
Part of ISBN: 9781493977475
Part of ISSN: 1064-3745
Part of ISSN: 1940-6029
Source: Self-asserted source
Rodrigo A. Gutierrez

Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience

Scientific Reports
2018-12 | Journal article
Part of ISSN: 2045-2322
Source: Self-asserted source
Rodrigo A. Gutierrez

Plant pathogen responses to Late Pleistocene and Holocene climate change in the central Atacama Desert, Chile

Scientific Reports
2018-11-21 | Journal article
Contributors: Jamie R. Wood; Francisca P. Díaz; Claudio Latorre; Janet M. Wilmshurst; Olivia R. Burge; Rodrigo A. Gutiérrez
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Crossref

MicroRNA Profiling and Bioinformatics Target Analysis in Dorsal Hippocampus of Chronically Stressed Rats: Relevance to Depression Pathophysiology

Frontiers in Molecular Neuroscience
2018-08-06 | Journal article
Part of ISSN: 1662-5099
Source: Self-asserted source
Rodrigo A. Gutierrez

SMZ/SNZ and gibberellin signaling are required for nitrate-elicited delay of flowering time in Arabidopsis thaliana

Journal of Experimental Botany
2018-01-23 | Journal article
Part of ISSN: 0022-0957
Part of ISSN: 1460-2431
Source: Self-asserted source
Rodrigo A. Gutierrez

GENIUS: web server to predict local gene networks and key genes for biological functions

Bioinformatics
2017 | Journal article
WOSUID:

WOS:000397265300022

Contributors: Puelma, Tomas; Araus, Viviana; Canales, Javier; Vidal, Elena A.; Cabello, Juan M.; Soto, Alvaro; Gutierrez, Rodrigo A.
Source: Self-asserted source
Rodrigo A. Gutierrez via ResearcherID

Global gene expression analysis provides insight into local adaptation to geothermal streams in tadpoles of the Andean toad Rhinella spinulosa

Scientific Reports
2017 | Journal article
WOSUID:

WOS:000401406700041

Contributors: Pastenes, Luis; Valdivieso, Camilo; Di Genova, Alex; Travisany, Dante; Hart, Andrew; Montecino, Martin; Orellana, Ariel; Gonzalez, Mauricio; Gutierrez, Rodrigo A.; Allende, Miguel L. et al.
Source: Self-asserted source
Rodrigo A. Gutierrez via ResearcherID

Nitrate signaling and early responses in Arabidopsis roots

Journal of Experimental Botany
2017 | Journal article
WOSUID:

WOS:000404131000008

Contributors: Undurraga, Soledad F.; Ibarra-Henriquez, Catalina; Fredes, Isabel; Miguel Alvarez, Jose; Gutierrez, Rodrigo A.
Source: Self-asserted source
Rodrigo A. Gutierrez via ResearcherID
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Peer review (10 reviews for 7 publications/grants)

Review activity for Faculty Opinions (2)
Review activity for Nature (1)
Review activity for Nature communications (1)
Review activity for Nature plants. (2)
Review activity for Plant physiology. (2)
Review activity for Science. (1)
Review activity for The plant cell. (1)