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A Health-Sector-Specific Occupational Health and Safety Management System Model

Healthcare
2025-01-30 | Journal article
Contributors: Pınar Yeşilgöz; Kazım Yalçın Arga
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Genome-scale metabolic models in translational medicine: the current status and potential of machine learning in improving the effectiveness of the models

Molecular Omics
2024 | Journal article
Contributors: Beste Turanli; Gizem Gulfidan; Ozge Onluturk Aydogan; Ceyda Kula; Gurudeeban Selvaraj; Kazim Yalcin Arga
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Unlocking the Power of Immune Microenvironment in AML Therapy: Current Insight and Future Prospects

2024 | Book chapter
Contributors: Nurdan Kelesoglu; Kazim Yalcin Arga
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Casticin inhibits the hedgehog signaling and leads to apoptosis in AML stem-like KG1a and mature KG1 cells

Turkish Journal of Biochemistry
2024-12-03 | Journal article
Contributors: Tuğba Erkmen Doğru; Gizem Gülfidan; Halil Ateş; Kazım Yalçın Arga; Semra Koçtürk
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Exploring COVID-19 Pandemic Disparities with Transcriptomic Meta-analysis from the Perspective of Personalized Medicine

Journal of Microbiology
2024-09 | Journal article
Contributors: Medi Kori; Ceyda Kasavi; Kazim Yalcin Arga
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Tumor Mutation Burden as a Cornerstone in Precision Oncology Landscapes: Effect of Panel Size and Uncertainty in Cutoffs

OMICS: A Journal of Integrative Biology
2024-04-01 | Journal article
Contributors: Betul Budak; Kazim Yalcin Arga
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A 19-Gene Signature of Serous Ovarian Cancer Identified by Machine Learning and Systems Biology: Prospects for Diagnostics and Personalized Medicine

OMICS: A Journal of Integrative Biology
2024-02-01 | Journal article
Contributors: Medi Kori; Talip Yasir Demirtas; Betul Comertpay; Kazim Yalcin Arga; Raghu Sinha; Esra Gov
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Pharmacomicrobiomics-Guided Precision Oncology: A New Frontier of P4 (Predictive, Personalized, Preventive, and Participatory) Medicine and Microbiome-Based Therapeutics

OMICS: A Journal of Integrative Biology
2024-01-01 | Journal article
Contributors: Kazim Yalcin Arga; Heba Attia; Ramy K. Aziz
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Differential co‐expression network analysis elucidated genes associated with sensitivity to farnesyltransferase inhibitor and prognosis of acute myeloid leukemia

Cancer Medicine
2023-12 | Journal article
Contributors: Nurdan Kelesoglu; Medi Kori; Betul Karademir Yilmaz; Ozlem Ates Duru; Kazim Yalcin Arga
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A Differential Transcriptional Regulome Approach to Unpack Cancer Biology: Insights on Renal Cell Carcinoma Subtypes

OMICS: A Journal of Integrative Biology
2023-11-01 | Journal article
Contributors: Aysegul Caliskan; Kazim Yalcin Arga
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Three candidate anticancer drugs were repositioned by integrative analysis of the transcriptomes of species with different regenerative abilities after injury

Computational Biology and Chemistry
2023-10 | Journal article
Contributors: Elif Kubat Oktem; Ummuhan Demir; Metin Yazar; Kazim Yalcin Arga
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Toward Precision Oncology in Glioblastoma with a Personalized Cancer Genome Reporting Tool and Genetic Changes Identified by Whole Exome Sequencing

OMICS: A Journal of Integrative Biology
2023-09-01 | Journal article
Contributors: Onur Erdogan; Şeyma Çolakoğlu Özkaya; Can Erzik; Kaya Bilguvar; Kazım Yalçın Arga; Fatih Bayraklı
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The Versatility of Plectin in Cancer: A Pan-Cancer Analysis on Potential Diagnostic and Prognostic Impacts of Plectin Isoforms

OMICS: A Journal of Integrative Biology
2023-06-01 | Journal article
Contributors: Hulya Gundesli; Medi Kori; Kazim Yalcin Arga
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Çoklu-Omik Veri Entegrasyonu: Yöntem, Araç Ve Sağlık Uygulamaları

2023-04-06 | Book chapter
Contributors: Gizem Gülfidan; Kazım Yalçın Arga; Dilek Demircan Çeker; Abdullah Karadağ
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Systems Biomarkers, Artificial Intelligence, and One Health Vision Can Help Fight Antimicrobial Resistance

OMICS: A Journal of Integrative Biology
2023-04-01 | Journal article
Contributors: Ceyda Kula; Kazım Yalçın Arga
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A Transcriptomic and Reverse-Engineering Strategy Reveals Molecular Signatures of Arachidonic Acid Metabolism in 12 Cancers

OMICS: A Journal of Integrative Biology
2023-03-01 | Journal article
Contributors: Elif Kubat Oktem; Busra Aydin; Gizem Gulfidan; Kazim Yalcin Arga
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Potential Early Markers for Breast Cancer: A Proteomic Approach Comparing Saliva and Serum Samples in a Pilot Study

International Journal of Molecular Sciences
2023-02-19 | Journal article
Contributors: Indu Sinha; Rachel L. Fogle; Gizem Gulfidan; Anne E. Stanley; Vonn Walter; Christopher S. Hollenbeak; Kazim Y. Arga; Raghu Sinha
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Molecular Signatures in Acute Myeloid Leukemia: From Diagnosis to Targeted Therapy and Drug Repositioning

2022 | Book chapter
Contributors: Nurdan Kelesoglu; Betul Karademir-Yilmaz; Kazim Yalcin Arga
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A Pan-Cancer Atlas of Differentially Interacting Hallmarks of Cancer Proteins

Journal of Personalized Medicine
2022-11-17 | Journal article
Contributors: Medi Kori; Gullu Elif Ozdemir; Kazim Yalcin Arga; Raghu Sinha
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Human oncogenic viruses: an overview of protein biomarkers in viral cancers and their potential use in clinics

Expert Review of Anticancer Therapy
2022-11-02 | Journal article
Contributors: Medi Kori; Kazim Yalcin Arga
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Precision Oncology: An Ensembled Machine Learning Approach to Identify a Candidate mRNA Panel for Stratification of Patients with Breast Cancer

OMICS: A Journal of Integrative Biology
2022-09-01 | Journal article
Contributors: Fırat Kurt; Mustafa Agaoglu; Kazım Yalçın Arga
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Acute Myeloid Leukemia: New Multiomics Molecular Signatures and Implications for Systems Medicine Diagnostics and Therapeutics Innovation

OMICS: A Journal of Integrative Biology
2022-07-01 | Journal article
Contributors: Nurdan Kelesoglu; Medi Kori; Beste Turanli; Kazim Yalcin Arga; Betul Karademir Yilmaz; Ozlem Ates Duru
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Driving Precision Oncology to Clinical Practice: The Road Ahead from Biomarker Validation to Clinical Decision Systems

OMICS: A Journal of Integrative Biology
2022-06-01 | Journal article
Contributors: Betül Karademir Yılmaz; Kazım Yalçın Arğa
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Multiomics Data Integration Identifies New Molecular Signatures for Abdominal Aortic Aneurysm and Aortic Occlusive Disease: Implications for Early Diagnosis, Prognosis, and Therapeutic Targets

OMICS: A Journal of Integrative Biology
2022-05-01 | Journal article
Contributors: Medi Kori; Defne Cig; Kazim Yalcin Arga; Ceyda Kasavi
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Precision Diagnosis of Maturity-Onset Diabetes of the Young with Next-Generation Sequencing: Findings from the MODY-IST Study in Adult Patients

OMICS: A Journal of Integrative Biology
2022-04-01 | Journal article
Contributors: Hulya Yilmaz Aydogan; Nurdan Gul; Deniz Kanca Demirci; Ummu Mutlu; Gizem Gulfidan; Kazim Yalcin Arga; Aclan Ozder; Ahmet Adil Camli; Yildiz Tutuncu; Oguz Ozturk et al.
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Past, Present, and Future of Therapies for Pituitary Neuroendocrine Tumors: Need for Omics and Drug Repositioning Guidance

OMICS: A Journal of Integrative Biology
2022-03-01 | Journal article
Contributors: Busra Aydin; Esra Yildirim; Onur Erdogan; Kazim Yalcin Arga; Betul Karademir Yilmaz; Suheyla Uyar Bozkurt; Fatih Bayrakli; Beste Turanli
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Artificial Intelligence as Accelerator for Genomic Medicine and Planetary Health

OMICS: A Journal of Integrative Biology
2021-12-01 | Journal article
Contributors: Gizem Gulfidan; Hande Beklen; Kazim Yalcin Arga
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Overview of omics biomarkers in pituitary neuroendocrine tumors to design future diagnosis and treatment strategies

EPMA Journal
2021-09 | Journal article
Contributors: Busra Aydin; Aysegul Caliskan; Kazim Yalcin Arga
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Differential Protein Interactome in Esophageal Squamous Cell Carcinoma Offers Novel Systems Biomarker Candidates with High Diagnostic and Prognostic Performance

OMICS: A Journal of Integrative Biology
2021-08-01 | Journal article
Contributors: Gizem Gulfidan; Hande Beklen; Indu Sinha; Fulya Kucukalp; Buse Caloglu; Ipek Esen; Beste Turanli; Dilara Ayyildiz; Kazim Yalcin Arga; Raghu Sinha
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Monogenic Childhood Diabetes: Dissecting Clinical Heterogeneity by Next-Generation Sequencing in Maturity-Onset Diabetes of the Young

OMICS: A Journal of Integrative Biology
2021-07-01 | Journal article
Contributors: Deniz Kanca Demirci; Feyza Darendeliler; Sukran Poyrazoglu; Asli Derya Kardelen Al; Nurdan Gul; Yildiz Tutuncu; Gizem Gulfidan; Kazim Yalcin Arga; Canan Cacina; Oguz Ozturk et al.
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Thanatechnology and the Living Dead: New Concepts in Digital Transformation and Human-Computer Interaction

OMICS: A Journal of Integrative Biology
2021-07-01 | Journal article
Contributors: Vural Özdemir; Simon Springer; Arif Yıldırım; Şehmus Biçer; Aslıgül Kendirci; Semra Şardaş; Hakan Kılıç; Nezih Hekim; Tanja Kunej; Kazım Yalçın Arga et al.
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Cancer Stem Cell Transcriptome Profiling Reveals Seed Genes of Tumorigenesis: New Avenues for Cancer Precision Medicine

OMICS: A Journal of Integrative Biology
2021-06-01 | Journal article
Contributors: Betul Comertpay; Gizem Gulfidan; Kazim Yalcin Arga; Esra Gov
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Recent Developments in Cancer Systems Biology: Lessons Learned and Future Directions

Journal of Personalized Medicine
2021-04-04 | Journal article
Contributors: Kazim Y. Arga; Raghu Sinha
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Differential Interactome Proposes Subtype-Specific Biomarkers and Potential Therapeutics in Renal Cell Carcinomas

Journal of Personalized Medicine
2021-02-23 | Journal article
Contributors: Aysegul Caliskan; Gizem Gulfidan; Raghu Sinha; Kazim Yalcin Arga
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Current State of “Omics” Biomarkers in Pancreatic Cancer

Journal of Personalized Medicine
2021-02-14 | Journal article
Contributors: Beste Turanli; Esra Yildirim; Gizem Gulfidan; Kazim Yalcin Arga; Raghu Sinha
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ETS-Domain Transcription Factor Elk-1 Regulates Stemness Genes in Brain Tumors and CD133+ BrainTumor-Initiating Cells

Journal of Personalized Medicine
2021-02-14 | Journal article
Contributors: Melis Savasan Sogut; Chitra Venugopal; Basak Kandemir; Ugur Dag; Sujeivan Mahendram; Sheila Singh; Gizem Gulfidan; Kazim Yalcin Arga; Bayram Yilmaz; Isil Aksan Kurnaz
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Comprehensive Analysis of RNA-Seq Gene Expression Profiling of Brain Transcriptomes Reveals Novel Genes, Regulators, and Pathways in Autism Spectrum Disorder

Brain Sciences
2020-10-17 | Journal article
Contributors: Md Rezanur Rahman; Maria Cristina Petralia; Rosella Ciurleo; Alessia Bramanti; Paolo Fagone; Md Shahjaman; Lang Wu; Yanfa Sun; Beste Turanli; Kazim Yalcin Arga et al.
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<p>Omics-Driven Biomarkers of Psoriasis: Recent Insights, Current Challenges, and Future Prospects</p>

Clinical, Cosmetic and Investigational Dermatology
2020-08 | Journal article
Contributors: Busra Aydin; Kazim Yalcin Arga; Ayse Serap Karadag
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Discovery of therapeutic agents for prostate cancer using genome-scale metabolic modeling and drug repositioning

EBioMedicine
2019 | Journal article
EID:

2-s2.0-85063114920

Contributors: Turanli, B.; Zhang, C.; Kim, W.; Benfeitas, R.; Uhlen, M.; Arga, K.Y.; Mardinoglu, A.
Source: Self-asserted source
Kazim Yalcin Arga via Scopus - Elsevier

Identification of novel components of target-of-rapamycin signaling pathway by network-based multi-omics integrative analysis

OMICS A Journal of Integrative Biology
2019 | Journal article
EID:

2-s2.0-85065881694

Contributors: Dereli Eke, E.; Arga, K.Y.; Dikicioglu, D.; Eraslan, S.; Erkol, E.; Celik, A.; Kirdar, B.; Di Camillo, B.
Source: Self-asserted source
Kazim Yalcin Arga via Scopus - Elsevier

Network-based approach to identify molecular signatures and therapeutic agents in Alzheimer's disease

Computational Biology and Chemistry
2019 | Journal article
EID:

2-s2.0-85059230572

Contributors: Rahman, M.R.; Islam, T.; Turanli, B.; Zaman, T.; Faruquee, H.M.; Rahman, M.M.; Mollah, M.N.H.; Nanda, R.K.; Arga, K.Y.; Gov, E. et al.
Source: Self-asserted source
Kazim Yalcin Arga via Scopus - Elsevier

Novel genomic biomarker candidates for cervical cancer as identified by differential co-expression network analysis

OMICS A Journal of Integrative Biology
2019 | Journal article
EID:

2-s2.0-85065869977

Contributors: Kori, M.; Gov, E.; Arga, K.Y.
Source: Self-asserted source
Kazim Yalcin Arga via Scopus - Elsevier

Identification of Prognostic Biomarker Signatures and Candidate Drugs in Colorectal Cancer: Insights from Systems Biology Analysis

Medicina
2019-01-17 | Journal article
Contributors: Md. Rezanur Rahman; Tania Islam; Esra Gov; Beste Turanli; Gizem Gulfidan; Md. Shahjaman; Nilufa Akhter Banu; Md. Nurul Haque Mollah; Kazim Yalcin Arga; Mohammad Ali Moni
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A network-based cancer drug discovery: From integrated multi-omics approaches to precision medicine

Current Pharmaceutical Design
2018 | Journal article
EID:

2-s2.0-85060397141

Contributors: Turanli, B.; Karagoz, K.; Gulfidan, G.; Sinha, R.; Mardinoglu, A.; Arga, K.Y.
Source: Self-asserted source
Kazim Yalcin Arga via Scopus - Elsevier

Drug repositioning for effective prostate cancer treatment

Frontiers in Physiology
2018 | Journal article
EID:

2-s2.0-85047004631

Contributors: Turanli, B.; Grøtli, M.; Boren, J.; Nielsen, J.; Uhlen, M.; Arga, K.Y.; Mardinoglu, A.
Source: Self-asserted source
Kazim Yalcin Arga via Scopus - Elsevier

Drug Targeting and Biomarkers in Head and Neck Cancers: Insights from Systems Biology Analyses

OMICS A Journal of Integrative Biology
2018 | Journal article
EID:

2-s2.0-85049061035

Contributors: Islam, T.; Rahman, R.; Gov, E.; Turanli, B.; Gulfidan, G.; Haque, A.; Arga, K.Y.; Haque Mollah, N.
Source: Self-asserted source
Kazim Yalcin Arga via Scopus - Elsevier

Systems biomarkers in psoriasis: Integrative evaluation of computational and experimental data at transcript and protein levels

Gene
2018 | Journal article
EID:

2-s2.0-85041663621

Contributors: Sevimoglu, T.; Turanli, B.; Bereketoglu, C.; Arga, K.Y.; Karadag, A.S.
Source: Self-asserted source
Kazim Yalcin Arga via Scopus - Elsevier

The Genome-Based Metabolic Systems Engineering to Boost Levan Production in a Halophilic Bacterial Model

OMICS A Journal of Integrative Biology
2018 | Journal article
EID:

2-s2.0-85045447722

Contributors: Aydin, B.; Ozer, T.; Oner, E.T.; Arga, K.Y.
Source: Self-asserted source
Kazim Yalcin Arga via Scopus - Elsevier

Identification of Prognostic Biomarker Signatures and Candidate Drugs in Colorectal Cancer: Insights from Systems Biology Analysis

2018-12-29 | Other
Contributors: Rezanur Rahman; Tania Islam; Esra Gov; Beste Turanli; Gizem Gulfidan; Md. Shahjaman; Nilufa Akhter Banu; Nurul Haque Mollah; Kazim Yalcin Arga; Mohammad Ali Moni
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Identification of Prognostic Biomarker Signatures and Candidate Drugs in Colorectal Cancer: Insights from Systems Biology Analysis

2018-12-03 | Other
Contributors: Md. Rezanur Rahman; Tania Islam; Esra Gov; Beste Turanli; Md. Shahjaman; Nilufa Akhter Banu; Md. Nurul Haque Mollah; Kazim Yalcin Arga; Mohammad Ali Moni
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Peer review (1 review for 1 publication/grant)

Review activity for BMC bioinformatics (1)