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Employment (2)

Okinawa Institute of Science and Technology Graduate University: Onna, JP

2017-07-01 to present
Employment
Source: Self-asserted source
Simone Pigolotti

Okinawa Institute of Science and Technology Graduate University: Onna, Okinawa, JP

2017-07-01 to present | Associate Professor (Pigolotti Unit)
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OIST via ORCID Member Portal

Works (50 of 93)

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Page 1 of 2

Single-molecule detection of transient dimerization of opioid receptors 1: Homodimers’ effect on signaling and internalization

2024-08-29 | Preprint
Contributors: Peng Zhou; Taka A. Tsunoyama; Rinshi S. Kasai; Koichiro M. Hirosawa; Ziya Kalay; Amine Aladag; Takahiro K. Fujiwara; Simone Pigolotti; Akihiro Kusumi
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Crossref

Single-molecule detection of transient dimerization of opioid receptors 2: Heterodimer blockage reduces morphine tolerance

2024-08-29 | Preprint
Contributors: Peng Zhou; Rinshi S. Kasai; Wakako Fujita; Taka A. Tsunoyama; Hiroshi Ueda; Simone Pigolotti; Takahiro K. Fujiwara; Akihiro Kusumi
Source: check_circle
Crossref

Single-molecule detection of transient dimerization of opioid receptors 1: Homodimers' effect on signaling and internalization

2024-07-25 | Preprint
Contributors: Peng Zhou; Taka Aki Tsunoyama; Rinshi S Kasai; Koichiro M Hirosawa; Ziya Kalay; Amine Aladag; Takahiro Fujiwara; Simone Pigolotti; Akihiro Kusumi
Source: check_circle
Crossref

Single-molecule detection of transient dimerization of opioid receptors 2: Heterodimer blockage reduces morphine tolerance

2024-07-25 | Preprint
Contributors: Peng Zhou; Rinshi S. Kasai; Wakako Fujita; Taka A. Tsunoyama; Hiroshi Ueda; Simone Pigolotti; Takahiro K. Fujiwara; Akihiro Kusumi
Source: check_circle
Crossref

Hyperdisordered cell packing on a growing surface

2024-05-20 | Preprint
Contributors: R. J. H. Ross; Giovanni D. Masucci; Chun Yen Lin; Teresa L. Iglesias; Sam Reiter; Simone Pigolotti
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Crossref

Blocking uncertain mispriming errors of PCR

2024-04-23 | Preprint
Contributors: Takumi Takahashi; Hiroyuki Aoyanagi; Simone Pigolotti; Shoichi Toyabe
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Crossref

Target search in the CRISPR/Cas9 system: facilitated diffusion with target cues

New Journal of Physics
2024-04-01 | Journal article
Contributors: Qiao Lu (路桥); Simone Pigolotti
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Crossref

Genome replication in asynchronously growing microbial populations

PLOS Computational Biology
2024-01-05 | Journal article
Contributors: Florian G. Pflug; Oleg A Igoshin; Deepak Bhat; Simone Pigolotti
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Crossref

Thermodynamic bounds on time-reversal asymmetry

Physical Review E
2023-12-12 | Journal article
Contributors: Shiling Liang; Simone Pigolotti
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Crossref

Genome replication in asynchronously growing microbial populations

2023-08-25 | Preprint
Contributors: Florian Pflug; Deepak Bhat; Simone Pigolotti
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Crossref

Correction: Speed variations of bacterial replisomes

eLife
2023-04-19 | Journal article
Contributors: Deepak Bhat; Samuel Hauf; Charles Plessy; Yohei Yokobayashi; Simone Pigolotti
Source: check_circle
Crossref

Pareto optimal fronts of kinetic proofreading

New Journal of Physics
2023-04-01 | Journal article
Contributors: Davide Chiuchiu; Shrabani Mondal; Simone Pigolotti
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Crossref

Coalescent dynamics of planktonic communities

Physical Review E
2022-10-17 | Journal article
Contributors: Paula Villa Martín; Anzhelika Koldaeva; Simone Pigolotti
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Crossref

Speed variations of bacterial replisomes

eLife
2022-07-25 | Journal article
Contributors: Deepak Bhat; Samuel Hauf; Charles Plessy; Yohei Yokobayashi; Simone Pigolotti
Source: check_circle
Crossref

Error-suppression mechanism of PCR by blocker strands

2022-06-04 | Preprint
Contributors: Hiroyuki Aoyanagi; Simone Pigolotti; Shinji Ono; Shoichi Toyabe
Source: check_circle
Crossref

Optimization and Fabrication of Multi-Level Microchannels for Long-Term Imaging of Bacterial Growth and Expansion

Micromachines
2022-04-07 | Journal article
Contributors: Hsieh-Fu Tsai; Daniel Carlson; Anzhelika Koldaeva; Simone Pigolotti; Amy Shen
Source: check_circle
Crossref

Population genetics in microchannels

Proceedings of the National Academy of Sciences
2022-03-22 | Journal article
Contributors: Anzhelika Koldaeva; Hsieh-Fu Tsai; Amy Q. Shen; Simone Pigolotti
Source: check_circle
Crossref

Enhanced Mutation Rate, Relaxed Selection, and the "domino Effect" are associated with Gene Loss in Blattabacterium, A Cockroach Endosymbiont

Molecular Biology and Evolution
2021 | Journal article
EID:

2-s2.0-85114700033

Part of ISSN: 15371719 07374038
Contributors: Kinjo, Y.; Lo, N.; Martín, P.V.; Tokuda, G.; Pigolotti, S.; Bourguignon, T.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier

Generalized Euler-Lotka equation for correlated cell divisions

Physical Review E
2021 | Journal article
EID:

2-s2.0-85109019399

Part of ISSN: 24700053 24700045
Contributors: Pigolotti, S.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier

Population genetics in microchannels

arXiv
2021 | Other
EID:

2-s2.0-85106080576

Part of ISSN: 23318422
Contributors: Koldaeva, A.; Tsai, H.-F.; Shen, A.Q.; Pigolotti, S.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier

Search and Localization Dynamics of the CRISPR-Cas9 System

Physical Review Letters
2021 | Journal article
EID:

2-s2.0-85119099861

Part of ISSN: 10797114 00319007
Contributors: Lu, Q.; Bhat, D.; Stepanenko, D.; Pigolotti, S.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier

Speed fluctuations of bacterial replisomes

2021-10-15 | Preprint
Contributors: Deepak Bhat; Samuel Hauf; Charles Plessy; Yohei Yokobayashi; Simone Pigolotti
Source: check_circle
Crossref
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Length Scales in Brownian yet Non-Gaussian Dynamics

Physical Review X
2021-07-02 | Journal article
Contributors: José M. Miotto; Simone Pigolotti; Aleksei V. Chechkin; Sándalo Roldán-Vargas
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Crossref
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Physical bioenergetics: Energy fluxes, budgets, and constraints in cells

Proceedings of the National Academy of Sciences
2021-06-29 | Journal article
Contributors: Xingbo Yang; Matthias Heinemann; Jonathon Howard; Greg Huber; Srividya Iyer-Biswas; Guillaume Le Treut; Michael Lynch; Kristi L. Montooth; Daniel J. Needleman; Simone Pigolotti et al.
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Generalized Euler-Lotka equation for correlated cell divisions

2021-01-13 | Preprint
Contributors: Simone Pigolotti
Source: check_circle
Crossref

Bifractal nature of chromosome contact maps

Physical Review Research
2020 | Journal article
EID:

2-s2.0-85114125788

Part of ISSN: 26431564
Contributors: Pigolotti, S.; Jensen, M.H.; Zhan, Y.; Tiana, G.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier

Increased Mutation Rate Is Linked to Genome Reduction in Prokaryotes

Current Biology
2020 | Journal article
EID:

2-s2.0-85090059476

Part of ISSN: 18790445 09609822
Contributors: Bourguignon, T.; Kinjo, Y.; Villa-Martín, P.; Coleman, N.V.; Tang, Q.; Arab, D.A.; Wang, Z.; Tokuda, G.; Hongoh, Y.; Ohkuma, M. et al.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier

Stochastic thermodynamics: Experiment and theory

Journal of Statistical Mechanics: Theory and Experiment
2020 | Journal article
EID:

2-s2.0-85087132665

Part of ISSN: 17425468
Contributors: Bechhoefer, J.; Ciliberto, S.; Pigolotti, S.; Roldán, E.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier

Ocean currents promote rare species diversity in protists

Science Advances
2020-07-17 | Journal article
Contributors: Paula Villa Martín; Aleš Buček; Thomas Bourguignon; Simone Pigolotti
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Crossref
grade
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Assembly of heteropolymers via a network of reaction coordinates

Physical Review E
2019 | Journal article
EID:

2-s2.0-85077229887

Part of ISSN: 24700053 24700045
Contributors: Chiuchiù, D.; Ferrare, J.; Pigolotti, S.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier

Error-Speed Correlations in Biopolymer Synthesis

Physical Review Letters
2019 | Journal article
EID:

2-s2.0-85069959699

Part of ISSN: 10797114 00319007
Contributors: Chiuchiú, D.; Tu, Y.; Pigolotti, S.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier

Hyperaccurate currents in stochastic thermodynamics

Physical Review E
2019 | Journal article
EID:

2-s2.0-85077228898

Part of ISSN: 24700053 24700045
Contributors: Busiello, D.M.; Pigolotti, S.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier

Integral fluctuation relations for entropy production at stopping times

Journal of Statistical Mechanics: Theory and Experiment
2019 | Journal article
EID:

2-s2.0-85076753330

Part of ISSN: 17425468
Contributors: Neri, I.; Roldán, É.; Pigolotti, S.; Jülicher, F.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier

Bet-hedging strategies in expanding populations

PLOS Computational Biology
2019-04-18 | Journal article
Contributors: Paula Villa Martín; David Alonso; Miguel A. Muñoz; Simone Pigolotti
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Crossref
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Arcsine Laws in Stochastic Thermodynamics

Physical Review Letters
2018 | Journal article
EID:

2-s2.0-85053137491

Part of ISSN: 10797114 00319007
Contributors: Barato, A.C.; Roldán, É.; Martínez, I.A.; Pigolotti, S.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier

Energetic funnel facilitates facilitated diffusion

Nucleic Acids Research
2018 | Journal article
EID:

2-s2.0-85044333700

Part of ISSN: 13624962 03051048
Contributors: Cencini, M.; Pigolotti, S.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier

Evolution of complex asexual reproductive strategies in Jellyfish

American Naturalist
2018 | Journal article
EID:

2-s2.0-85046085126

Part of ISSN: 00030147
Contributors: Schnedler-Meyer, N.A.; Pigolotti, S.; Mariani, P.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier

Mapping of uncertainty relations between continuous and discrete time

Physical Review E
2018 | Journal article
EID:

2-s2.0-85044102296

Part of ISSN: 24700053 24700045
Contributors: Chiuchiù, D.; Pigolotti, S.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier

Stochastic Spatial Models in Ecology: A Statistical Physics Approach

Journal of Statistical Physics
2018-07 | Journal article
Contributors: Simone Pigolotti; Massimo Cencini; Daniel Molina; Miguel A. Muñoz
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Generic Properties of Stochastic Entropy Production

Physical Review Letters
2017 | Journal article
EID:

2-s2.0-85030773054

Part of ISSN: 10797114 00319007
Contributors: Pigolotti, S.; Neri, I.; Roldán, É.; Jülicher, F.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier

Competition between fast- and slow-diffusing species in non-homogeneous environments

Journal of Theoretical Biology
2016 | Journal article
EID:

2-s2.0-84959036232

Part of ISSN: 10958541 00225193
Contributors: Pigolotti, S.; Benzi, R.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier

Protocols for Copying and Proofreading in Template-Assisted Polymerization

Journal of Statistical Physics
2016 | Journal article
EID:

2-s2.0-84959109487

Part of ISSN: 00224715
Contributors: Pigolotti, S.; Sartori, P.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier

Competing Neutral Populations of Different Diffusivity

Trends in Mathematics
2015 | Book chapter
EID:

2-s2.0-84975748218

Part of ISSN: 2297024X 22970215
Contributors: Pigolotti, S.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier

Numerical and experimental study of the effects of noise on the permutation entropy

New Journal of Physics
2015 | Journal article
EID:

2-s2.0-84943533827

Part of ISSN: 13672630
Contributors: Quintero-Quiroz, C.; Pigolotti, S.; Torrent, M.C.; Masoller, C.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier

Stochasticity enhances the gaining of bet-hedging strategies in contact-process-like dynamics

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics
2015 | Journal article
EID:

2-s2.0-84924787535

Part of ISSN: 15502376 15393755
Contributors: Hidalgo, J.; Pigolotti, S.; Muñoz, M.A.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier

Thermodynamics of Error Correction

Physical Review X
2015 | Journal article
EID:

2-s2.0-85042896780

Part of ISSN: 21603308
Contributors: Sartori, P.; Pigolotti, S.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier

Analysis of self-overlap reveals trade-offs in plankton swimming trajectories

Journal of the Royal Society Interface
2014 | Journal article
EID:

2-s2.0-84901443694

Part of ISSN: 17425662 17425689
Contributors: Bianco, G.; Mariani, P.; Visser, A.W.; Mazzocchi, M.G.; Pigolotti, S.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier

Erratum: Analysis of self-overlap reveals trade-offs in plankton swimming trajectories (Journal of The Royal Society Interface (2014) 11 (20140479))

Journal of the Royal Society Interface
2014 | Journal article
EID:

2-s2.0-84903555095

Part of ISSN: 17425662 17425689
Contributors: Bianco, G.; Mariani, P.; Visser, A.W.; Mazzocchi, M.G.; Pigolotti, S.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier

Inherent directionality explains the lack of feedback loops in empirical networks

Scientific Reports
2014 | Journal article
EID:

2-s2.0-84923366921

Part of ISSN: 20452322
Contributors: Domínguez-García, V.; Pigolotti, S.; Muñoz, M.A.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier

Selective advantage of diffusing faster

Physical Review Letters
2014 | Journal article
EID:

2-s2.0-84900440545

Part of ISSN: 10797114 00319007
Contributors: Pigolotti, S.; Benzi, R.
Source: Self-asserted source
Simone Pigolotti via Scopus - Elsevier
Items per page:
Page 1 of 2

Peer review (7 reviews for 5 publications/grants)

Review activity for Journal of chemical physics. (1)
Review activity for Journal of statistical physics. (1)
Review activity for Nature communications (2)
Review activity for PLoS computational biology. (1)
Review activity for The journal of physical chemistry. (2)