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Works (17)

Metal-Responsive Transcription Factors Co-Regulate Anti-Sigma Factor (Rsd) and Ribosome Dimerization Factor Expression

International Journal of Molecular Sciences
2023-03-01 | Journal article
Contributors: Hideji Yoshida; Tomohiro Shimada; Akira Ishihama
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Genomic SELEX Reveals Pervasive Role of the Flagella Master Regulator FlhDC in Carbon Metabolism

International Journal of Molecular Sciences
2023-02-12 | Journal article
Contributors: Hiraku Takada; Kaede Kijima; Akira Ishiguro; Akira Ishihama; Tomohiro Shimada
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Transcription Factor SrsR (YgfI) Is a Novel Regulator for the Stress-Response Genes in Stationary Phase in Escherichia coli K-12

International Journal of Molecular Sciences
2022-05-27 | Journal article
Contributors: Ikki Kobayashi; Kenji Mochizuki; Jun Teramoto; Sousuke Imamura; Kazuhiro Takaya; Akira Ishihama; Tomohiro Shimada
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Regulatory role of CsuR (YiaU) in determination of cell surface properties of Escherichia coli K-12

Microbiology
2022-04-08 | Journal article
Contributors: Tomohiro Shimada; Rie Murayama; Tomoki Mashima; Natsuko Kawano; Akira Ishihama
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ALS-linked FUS mutations dysregulate G-quadruplex-dependent liquid–liquid phase separation and liquid-to-solid transition

Journal of Biological Chemistry
2021-11 | Journal article
Contributors: Akira Ishiguro; Jun Lu; Daisaku Ozawa; Yoshitaka Nagai; Akira Ishihama
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Whole set of constitutive promoters for RpoN sigma factor and the regulatory role of its enhancer protein NtrC in Escherichia coli K-12

Microbial Genomics
2021-11-30 | Journal article
Contributors: Tomohiro Shimada; Shun Furuhata; Akira Ishihama
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Hierarchy of transcription factor network in Escherichia coli K-12: H-NS-mediated silencing and Anti-silencing by global regulators

FEMS Microbiology Reviews
2021-11-23 | Journal article
Contributors: Akira Ishihama; Tomohiro Shimada
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Different recognition modes of G‐quadruplex RNA between two ALS/FTLD‐linked proteins TDP‐43 and FUS

FEBS Letters
2021-02 | Journal article
Contributors: Akira Ishiguro; Akira Katayama; Akira Ishihama
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The Molecular Basis of Sulfosugar Selectivity in Sulfoglycolysis

2021-02-09 | Preprint
Contributors: Mahima Sharma; Palika Abayakoon; Ruwan Epa; Yi Jin; James P. Lingford; Tomohiro Shimada; Masahiro Nakano; Janice Mui; Akira Ishihama; Ethan D. Goddard-Borger et al.
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The Molecular Basis of Sulfosugar Selectivity in Sulfoglycolysis

2021-02-09 | Other
Contributors: Mahima Sharma; Palika Abayakoon; Ruwan Epa; Yi Jin; James P. Lingford; Tomohiro Shimada; Masahiro Nakano; Janice Mui; Akira Ishihama; Ethan D. Goddard-Borger et al.
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Expanded roles of pyruvate-sensing PdhR in transcription regulation of the Escherichia coli K-12 genome: fatty acid catabolism and cell motility

Microbial Genomics
2020-10-01 | Journal article
Contributors: Takumi Anzai; Sousuke Imamura; Akira Ishihama; Tomohiro Shimada
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The Molecular Basis of Sulfosugar Selectivity in Sulfoglycolysis

2020-09-23 | Other
Contributors: Mahima Sharma; Palika Abayakoon; Yi Jin; Ruwan Epa; James P. Lingford; Tomohiro Shimada; Masahiro Nakano; Janice Mui; Akira Ishihama; Ethan D. Goddard-Borger et al.
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The Molecular Basis of Sulfosugar Selectivity in Sulfoglycolysis

2020-09-21 | Other
Contributors: Mahima Sharma; Palika Abayakoon; Yi Jin; Ruwan Epa; James P. Lingford; Tomohiro Shimada; Masahiro Nakano; Janice Mui; Akira Ishihama; Ethan D. Goddard-Borger et al.
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Cytotoxic Mechanism of Excess Polyamines Functions through Translational Repression of Specific Proteins Encoded by Polyamine Modulon

International Journal of Molecular Sciences
2020-03-31 | Journal article
Contributors: Akihiko Sakamoto; Junpei Sahara; Gota Kawai; Kaneyoshi Yamamoto; Akira Ishihama; Takeshi Uemura; Kazuei Igarashi; Keiko Kashiwagi; Yusuke Terui
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Coordinated Hibernation of Transcriptional and Translational Apparatus during Growth Transition of Escherichia coli to Stationary Phase

mSystems
2018-10-30 | Journal article
Contributors: Hideji Yoshida; Tomohiro Shimada; Akira Ishihama; Ileana M. Cristea
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The whole set of the constitutive promoters recognized by four minor sigma subunits of Escherichia coli RNA polymerase

PLOS ONE
2017-06-30 | Journal article
Contributors: Tomohiro Shimada; Dipankar Chatterji; Kan Tanaka; Akira Ishihama
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Differential Regulation of rRNA and tRNA Transcription from the rRNA-tRNA Composite Operon in Escherichia coli

PLOS ONE
2016-12-22 | Journal article
Contributors: Hiraku Takada; Christophe Herman; Tomohiro Shimada; Debashish Dey; M. Zuhaib Quyyum; Masahiro Nakano; Akira Ishiguro; Hideji Yoshida; Kaneyoshi Yamamoto; Ranjan Sen et al.
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Peer review (1 review for 1 publication/grant)

Review activity for Communications biology. (1)