Personal information

bioinformatics, NGS
Australia

Activities

Employment (2)

Queensland Brain Institute: Saint Lucia, QLD, AU

2012-06-17 to present | Research Fellow (Bioinformatics)
Employment
Source: Self-asserted source
Qiongyi Zhao

Shanghai Institutes for Biological Sciences: Shanghai, Shanghai, CN

2010-07-01 to 2012-06-14 | Research Associate (Bioinformatics)
Employment
Source: Self-asserted source
Qiongyi Zhao

Education and qualifications (2)

Shanghai Institutes for Biological Sciences: Shanghai, Shanghai, CN

2004-09-01 to 2010-06-30 | PhD (Bioinformatics & molecular biology)
Education
Source: Self-asserted source
Qiongyi Zhao

Shanghai Jiao Tong University: Shanghai, CN

2000-09-01 to 2004-06-30 | Bachelor (Biological engineering)
Education
Source: Self-asserted source
Qiongyi Zhao

Works (50)

A robust unsupervised clustering approach for high-dimensional biological imaging data reveals shared drug-induced morphological signatures

2024-09-09 | Preprint
Contributors: Shaine Chenxin Bao; Dalia Mizikovsky; Kathleen Pishas; Karla J Cowley; Qiongyi Zhao; Evanny Marinovic; Mark Carey; Ian Campbell; Kaylene J Simpson; Dane Cheasley et al.
Source: check_circle
Crossref

DNA G-Quadruplex Is a Transcriptional Control Device That Regulates Memory

The Journal of Neuroscience
2024-04-10 | Journal article
Contributors: Paul R. Marshall; Joshua Davies; Qiongyi Zhao; Wei-Siang Liau; Yujin Lee; Dean Basic; Ambika Periyakaruppiah; Esmi L. Zajaczkowski; Laura J. Leighton; Sachithrani U. Madugalle et al.
Source: check_circle
Crossref

Chronically high stress hormone levels dysregulate sperm long noncoding RNAs and their embryonic microinjection alters development and affective behaviours

Molecular Psychiatry
2024-03 | Journal article
Contributors: L. B. Hoffmann; B. Li; Q. Zhao; W. Wei; L. J. Leighton; T. W. Bredy; T. Y. Pang; A. J. Hannan
Source: check_circle
Crossref

Fear extinction is regulated by the activity of long noncoding RNAs at the synapse

Nature Communications
2023-11-22 | Journal article
Contributors: Wei-Siang Liau; Qiongyi Zhao; Adekunle Bademosi; Rachel S. Gormal; Hao Gong; Paul R. Marshall; Ambika Periyakaruppiah; Sachithrani U. Madugalle; Esmi L. Zajaczkowski; Laura J. Leighton et al.
Source: check_circle
Crossref

Synapse-Enriched m6A-Modified Malat1 Interacts with the Novel m6A Reader, DPYSL2, and Is Required for Fear-Extinction Memory

The Journal of Neuroscience
2023-10-25 | Journal article
Contributors: Sachithrani U. Madugalle; Wei-Siang Liau; Qiongyi Zhao; Xiang Li; Hao Gong; Paul R. Marshall; Ambika Periyakaruppiah; Esmi L. Zajaczkowski; Laura J. Leighton; Haobin Ren et al.
Source: check_circle
Crossref

ADRAM is an experience-dependent long noncoding RNA that drives fear extinction through a direct interaction with the chaperone protein 14-3-3

Cell Reports
2022 | Journal article
EID:

2-s2.0-85126675638

Part of ISSN: 22111247
Contributors: Wei, W.; Zhao, Q.; Wang, Z.; Liau, W.-S.; Basic, D.; Ren, H.; Marshall, P.R.; Zajaczkowski, E.L.; Leighton, L.J.; Madugalle, S.U. et al.
Source: Self-asserted source
Qiongyi Zhao via Scopus - Elsevier
grade
Preferred source (of 2)‎

Divergent evolution of developmental timing in the neocortex revealed by marsupial and eutherian transcriptomes

Development (Cambridge)
2022 | Journal article
EID:

2-s2.0-85124440371

Part of ISSN: 14779129 09501991
Contributors: Kozulin, P.; Suárez, R.; Zhao, Q.-Y.; Paolino, A.; Richards, L.J.; Fenlon, L.R.
Source: Self-asserted source
Qiongyi Zhao via Scopus - Elsevier

Fear extinction is regulated by long noncoding RNA activity at the synapse

bioRxiv
2022 | Other
EID:

2-s2.0-85128818857

Part of ISSN: 26928205
Contributors: Liau, W.-S.; Zhao, Q.; Bademosi, A.; Gormal, R.; Gong, H.; Marshall, P.R.; Periyakaruppiah, A.; Madugalle, S.U.; Zajackowski, E.L.; Leighton, L.J. et al.
Source: Self-asserted source
Qiongyi Zhao via Scopus - Elsevier

Orphan C/D box snoRNAs modulate fear-related memory processes in mice

bioRxiv
2022 | Other
EID:

2-s2.0-85133012788

Part of ISSN: 26928205
Contributors: Leighton, L.J.; Zhao, Q.; Marshall, P.R.; Madugalle, S.U.; Chan, A.H.C.; Musgrove, M.R.B.; Ren, H.; Periyakaruppiah, A.; Edson, J.; Wei, W. et al.
Source: Self-asserted source
Qiongyi Zhao via Scopus - Elsevier

The people behind the papers - Peter Kozulin, Rodrigo Suárez, Qiong-Yi Zhao, Linda Richards and Laura Fenlon

Development (Cambridge)
2022 | Journal article
EID:

2-s2.0-85125062773

Part of ISSN: 14779129 09501991
Contributors: Kozulin, P.; Zhao, Q.-Y.; Richards, L.; Fenlon, L.; Suárez, R.
Source: Self-asserted source
Qiongyi Zhao via Scopus - Elsevier

Adolescent chronic intermittent toluene inhalation dynamically regulates the transcriptome and neuronal methylome within the rat medial prefrontal cortex

Addiction Biology
2021 | Journal article
EID:

2-s2.0-85087647618

Part of ISSN: 13691600 13556215
Contributors: Dick, A.L.W.; Zhao, Q.; Crossin, R.; Baker-Andresen, D.; Li, X.; Edson, J.; Roeh, S.; Marshall, V.; Bredy, T.W.; Lawrence, A.J. et al.
Source: Self-asserted source
Qiongyi Zhao via Scopus - Elsevier

On the discovery of ADRAM, an experience-dependent long noncoding RNA that drives fear extinction through a direct interaction with the chaperone protein 14-3-3

bioRxiv
2021 | Other
EID:

2-s2.0-85115045742

Part of ISSN: 26928205
Contributors: Li, X.; Zhao, Q.; Wang, Z.; Liau, W.-S.; Basic, D.; Ren, H.; Marshall, P.R.; Zajaczkowski, E.L.; Leighton, L.J.; Madugalle, S.U. et al.
Source: Self-asserted source
Qiongyi Zhao via Scopus - Elsevier

Splicing factor proline and glutamine rich intron retention, reduced expression and aggregate formation are pathological features of amyotrophic lateral sclerosis

Neuropathology and Applied Neurobiology
2021 | Journal article
EID:

2-s2.0-85111654711

Part of ISSN: 13652990 03051846
Contributors: Hogan, A.L.; Grima, N.; Fifita, J.A.; McCann, E.P.; Heng, B.; Fat, S.C.M.; Wu, S.; Maharjan, R.; Cain, A.K.; Henden, L. et al.
Source: Self-asserted source
Qiongyi Zhao via Scopus - Elsevier

Dynamic regulation of Z-DNA in the mouse prefrontal cortex by the RNA-editing enzyme Adar1 is required for fear extinction

Nature Neuroscience
2020 | Journal article
EID:

2-s2.0-85085096369

Part of ISSN: 15461726 10976256
Contributors: Marshall, P.R.; Zhao, Q.; Li, X.; Wei, W.; Periyakaruppiah, A.; Zajaczkowski, E.L.; Leighton, L.J.; Madugalle, S.U.; Basic, D.; Wang, Z. et al.
Source: Self-asserted source
Qiongyi Zhao via Scopus - Elsevier
grade
Preferred source (of 2)‎

Genome-wide microRNA profiling in brain and blood samples in a mouse model of epileptogenesis

Epilepsy Research
2020 | Journal article
EID:

2-s2.0-85086730750

Part of ISSN: 18726844 09201211
Contributors: Chen, M.; Zhao, Q.-Y.; Edson, J.; Zhang, Z.H.; Li, X.; Wei, W.; Bredy, T.; Reutens, D.C.
Source: Self-asserted source
Qiongyi Zhao via Scopus - Elsevier

Publisher Correction: Dynamic regulation of Z-DNA in the mouse prefrontal cortex by the RNA-editing enzyme Adar1 is required for fear extinction (Nature Neuroscience, (2020), 23, 6, (718-729), 10.1038/s41593-020-0627-5)

Nature Neuroscience
2020 | Journal article
EID:

2-s2.0-85086857654

Part of ISSN: 15461726 10976256
Contributors: Marshall, P.R.; Zhao, Q.; Li, X.; Wei, W.; Periyakaruppiah, A.; Zajaczkowski, E.L.; Leighton, L.J.; Madugalle, S.U.; Basic, D.; Wang, Z. et al.
Source: Self-asserted source
Qiongyi Zhao via Scopus - Elsevier
grade
Preferred source (of 2)‎

SFPQ intron retention, reduced expression and aggregate formation in central nervous system tissue are pathological features of amyotrophic lateral sclerosis

bioRxiv
2020 | Other
EID:

2-s2.0-85098901385

Part of ISSN: 26928205
Contributors: Hogan, A.L.; Grima, N.; Fifita, J.A.; McCann, E.P.; Heng, B.; Fat, S.C.M.; Maharjan, R.; Cain, A.K.; Henden, L.; Tarr, I. et al.
Source: Self-asserted source
Qiongyi Zhao via Scopus - Elsevier

Dynamic DNA structure states interact with the RNA editing enzyme ADAR1 to modulate fear extinction memory

bioRxiv
2019 | Other
EID:

2-s2.0-85095542318

Part of ISSN: 26928205
Contributors: Marshall, P.R.; Zhao, Q.; Li, X.; Wei, W.; Malathi, A.; Zajaczkowski, E.; Leighton, L.; Madugalle, S.; Basic, D.; Wang, Z. et al.
Source: Self-asserted source
Qiongyi Zhao via Scopus - Elsevier

Monozygotic twins and triplets discordant for amyotrophic lateral sclerosis display differential methylation and gene expression

Scientific Reports
2019 | Journal article
EID:

2-s2.0-85066619948

Part of ISSN: 20452322
Contributors: Tarr, I.S.; McCann, E.P.; Benyamin, B.; Peters, T.J.; Twine, N.A.; Zhang, K.Y.; Zhao, Q.; Zhang, Z.-H.; Rowe, D.B.; Nicholson, G.A. et al.
Source: Self-asserted source
Qiongyi Zhao via Scopus - Elsevier
grade
Preferred source (of 2)‎

The DNA modification N6-methyl-2'-deoxyadenosine (m6dA) drives activity-induced gene expression and is required for fear extinction.

Nature neuroscience
2019-02-18 | Journal article
Source: Self-asserted source
Qiongyi Zhao
grade
Preferred source (of 3)‎

Bioorthogonal Metabolic Labeling of Nascent RNA in Neurons Improves the Sensitivity of Transcriptome-Wide Profiling.

ACS chemical neuroscience
2018-06-15 | Journal article
Source: Self-asserted source
Qiongyi Zhao
grade
Preferred source (of 2)‎

A functional role for the epigenetic regulator ING1 in activity-induced gene expression in primary cortical neurons

bioRxiv
2017 | Other
EID:

2-s2.0-85095519369

Part of ISSN: 26928205
Contributors: Leighton, L.J.; Zhao, Q.; Li, X.; Dai, C.; Marshall, P.R.; Liu, S.; Wang, Y.; Zajaczkowski, E.L.; Khandelwal, N.; Kumar, A. et al.
Source: Self-asserted source
Qiongyi Zhao via Scopus - Elsevier

A Functional Role for the Epigenetic Regulator ING1 in Activity-induced Gene Expression in Primary Cortical Neurons.

Neuroscience
2017-11-20 | Journal article
Source: Self-asserted source
Qiongyi Zhao
grade
Preferred source (of 2)‎

Whole-exome sequencing in amyotrophic lateral sclerosis suggests NEK1 is a risk gene in Chinese.

Genome medicine
2017-11-17 | Journal article
Source: Self-asserted source
Qiongyi Zhao
grade
Preferred source (of 2)‎

Cross-ethnic meta-analysis identifies association of the GPX3-TNIP1 locus with amyotrophic lateral sclerosis.

Nature communications
2017-09-20 | Journal article
Source: Self-asserted source
Qiongyi Zhao
grade
Preferred source (of 3)‎

Whole exome sequencing and DNA methylation analysis in a clinical amyotrophic lateral sclerosis cohort.

Molecular genetics & genomic medicine
2017-06-12 | Journal article
Source: Self-asserted source
Qiongyi Zhao
grade
Preferred source (of 2)‎

De novo assembly of transcriptome from next-generation sequencing data

Quantitative Biology
2016 | Journal article
EID:

2-s2.0-85013276437

Part of ISSN: 20954697 20954689
Contributors: Li, X.; Kong, Y.; Zhao, Q.-Y.; Li, Y.-Y.; Hao, P.
Source: Self-asserted source
Qiongyi Zhao via Scopus - Elsevier

Mapping and differential expression analysis from short-read RNA-Seq data in model organisms

Quantitative Biology
2016 | Journal article
EID:

2-s2.0-85035811835

Part of ISSN: 20954697 20954689
Contributors: Zhao, Q.-Y.; Gratten, J.; Restuadi, R.; Li, X.
Source: Self-asserted source
Qiongyi Zhao via Scopus - Elsevier

Rare DNA variants in the brain-derived neurotrophic factor gene increase risk for attention-deficit hyperactivity disorder: a next-generation sequencing study.

Molecular psychiatry
2016-07-26 | Journal article
Source: Self-asserted source
Qiongyi Zhao
grade
Preferred source (of 3)‎

Experience-Dependent Accumulation of N6-Methyladenosine in the Prefrontal Cortex Is Associated with Memory Processes in Mice.

The Journal of neuroscience : the official journal of the Society for Neuroscience
2016-06-01 | Journal article
Source: Self-asserted source
Qiongyi Zhao
grade
Preferred source (of 3)‎

Persistent variations in neuronal DNA methylation following cocaine self-administration and protracted abstinence in mice.

Neuroepigenetics
2015-10-02 | Journal article
Source: Self-asserted source
Qiongyi Zhao
grade
Preferred source (of 2)‎

New data and an old puzzle: the negative association between schizophrenia and rheumatoid arthritis.

International journal of epidemiology
2015-10-01 | Journal article
Source: Self-asserted source
Qiongyi Zhao
grade
Preferred source (of 2)‎

Global transcriptome and gene regulation network for secondary metabolite biosynthesis of tea plant (Camellia sinensis).

BMC genomics
2015-07-29 | Journal article
Source: Self-asserted source
Qiongyi Zhao
grade
Preferred source (of 2)‎

Purification of neural precursor cells reveals the presence of distinct, stimulus-specific subpopulations of quiescent precursors in the adult mouse hippocampus.

The Journal of Neuroscience
2015-05-01 | Journal article
Source: Self-asserted source
Qiongyi Zhao
grade
Preferred source (of 3)‎

A Comparative Study of Techniques for Differential Expression Analysis on RNA-Seq Data.

PloS one
2014 | Journal article
DOI:

10.1371/journal.pone.0103207

Contributors: Zhang, Zong Hong; Jhaveri, Dhanisha J; Marshall, Vikki M; Bauer, Denis C; Edson, Janette; Narayanan, Ramesh K; Robinson, Gregory J; Lundberg, Andreas E; Bartlett, Perry F; Wray, Naomi R et al.
Source: Self-asserted source
Qiongyi Zhao via ResearcherID
grade
Preferred source (of 2)‎

Developing conversed microsatellite markers and their implications in evolutionary analysis of the Bemisia tabaci complex

Scientific Reports
2014 | Journal article
EID:

2-s2.0-84921680209

Part of ISSN: 20452322
Contributors: Wang, H.-L.; Yang, J.; Boykin, L.M.; Zhao, Q.-Y.; Wang, Y.-J.; Liu, S.-S.; Wang, X.-W.
Source: Self-asserted source
Qiongyi Zhao via Scopus - Elsevier

Development of SNP and InDel markers via de novo transcriptome assembly in Sesamum indicum L

Molecular Breeding
2014 | Journal article
EID:

2-s2.0-84914809734

Part of ISSN: 15729788 13803743
Contributors: Wei, L.; Miao, H.; Li, C.; Duan, Y.; Niu, J.; Zhang, T.; Zhao, Q.; Zhang, H.
Source: Self-asserted source
Qiongyi Zhao via Scopus - Elsevier

Neocortical Tet3-mediated accumulation of 5-hydroxymethylcytosine promotes rapid behavioral adaptation

Proceedings of the National Academy of Sciences of the United States of America
2014 | Journal article
DOI:

10.1073/pnas.1318906111

Contributors: Li, Xiang; Wei, Wei; Zhao, Qiong-Yi; Widagdo, Jocelyn; Baker-Andresen, Danay; Flavell, Charlotte R.; D'Alessio, Ana; Zhang, Yi; Bredy, Timothy W.
Source: Self-asserted source
Qiongyi Zhao via ResearcherID
grade
Preferred source (of 2)‎

Towards a molecular characterization of autism spectrum disorders: An exome sequencing and systems approach

Translational Psychiatry
2014 | Journal article
EID:

2-s2.0-84938493805

Part of ISSN: 21583188
Contributors: An, J.Y.; Cristino, A.S.; Zhao, Q.; Edson, J.; Williams, S.M.; Ravine, D.; Wray, J.; Marshall, V.M.; Hunt, A.; Whitehouse, A.J.O. et al.
Source: Self-asserted source
Qiongyi Zhao via Scopus - Elsevier

Towards a molecular characterization of autism spectrum disorders: an exome sequencing and systems approach.

Translational psychiatry
2014 | Journal article
DOI:

10.1038/tp.2014.38

Contributors: An, J Y; Cristino, A S; Zhao, Q; Edson, J; Williams, S M; Ravine, D; Wray, J; Marshall, V M; Hunt, A; Whitehouse, A J O et al.
Source: Self-asserted source
Qiongyi Zhao via ResearcherID
grade
Preferred source (of 2)‎

Transcriptomic analyses reveal the adaptive features and biological differences of guts from two invasive whitefly species

Bmc Genomics
2014 | Journal article
DOI:

10.1186/1471-2164-15-370

Contributors: Ye, Xiao-Dong; Su, Yun-Lin; Zhao, Qiong-Yi; Xia, Wen-Qiang; Liu, Shu-Sheng; Wang, Xiao-Wei
Source: Self-asserted source
Qiongyi Zhao via ResearcherID
grade
Preferred source (of 2)‎

Methyl CpG binding domain ultra-sequencing: a novel method for identifying inter-individual and cell-type-specific variation in DNA methylation.

Genes, brain, and behavior
2014-07-23 | Journal article
Source: Self-asserted source
Qiongyi Zhao
grade
Preferred source (of 2)‎

5-methyl ultra-sequencing (5-methyl ultra-seq): A method for identifying individual and cell-type specific variation in dna methylation

Society for Neuroscience Abstract Viewer and Itinerary Planner
2013 | Journal article
Contributors: Baker-Andresen, D.; Li, X.; Zhao, Q.; Zhang, Z.; Wei, W.; Marshall, V.; Bredy, T.
Source: Self-asserted source
Qiongyi Zhao via ResearcherID

Global transcriptome profiles of Camellia sinensis during cold acclimation

Bmc Genomics
2013 | Journal article
DOI:

10.1186/1471-2164-14-415

Contributors: Wang, Xin-Chao; Zhao, Qiong-Yi; Ma, Chun-Lei; Zhang, Zong-Hong; Cao, Hong-Li; Kong, Yi-Meng; Yue, Chuan; Hao, Xin-Yuan; Chen, Liang; Ma, Jian-Qiang et al.
Source: Self-asserted source
Qiongyi Zhao via ResearcherID
grade
Preferred source (of 2)‎

The characteristics and expression profiles of the mitochondrial genome for the Mediterranean species of the Bemisia tabaci complex

Bmc Genomics
2013 | Journal article
DOI:

10.1186/1471-2164-14-401

Contributors: Wang, Hua-Ling; Yang, Jiao; Boykin, Laura M.; Zhao, Qiong-Yi; Li, Qian; Wang, Xiao-Wei; Liu, Shu-Sheng
Source: Self-asserted source
Qiongyi Zhao via ResearcherID
grade
Preferred source (of 2)‎

Alternative splicing and trans-splicing events revealed by analysis of the Bombyx mori transcriptome

Rna-a Publication of the Rna Society
2012 | Journal article
DOI:

10.1261/rna.029751.111

Contributors: Shao, Wei; Zhao, Qiong-Yi; Wang, Xiu-Ye; Xu, Xin-Yan; Tang, Qing; Li, Muwang; Li, Xuan; Xu, Yong-Zhen
Source: Self-asserted source
Qiongyi Zhao via ResearcherID
grade
Preferred source (of 2)‎

Analysis of a native whitefly transcriptome and its sequence divergence with two invasive whitefly species

Bmc Genomics
2012 | Journal article
DOI:

10.1186/1471-2164-13-529

Contributors: Wang, Xiao-Wei; Zhao, Qiong-Yi; Luan, Jun-Bo; Wang, Yu-Jun; Yan, Gen-Hong; Liu, Shu-Sheng
Source: Self-asserted source
Qiongyi Zhao via ResearcherID
grade
Preferred source (of 2)‎

Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study

Bmc Bioinformatics
2011 | Journal article
DOI:

10.1186/1471-2105-12-S14-S2

Contributors: Zhao, Qiong-Yi; Wang, Yi; Kong, Yi-Meng; Luo, Da; Li, Xuan; Hao, Pei
Source: Self-asserted source
Qiongyi Zhao via ResearcherID
grade
Preferred source (of 2)‎

SNP genotyping methods for crops in post-genomic era

Molecular Plant Breeding
2010 | Journal article
Contributors: Zhao, Qiong-Yi; Li, Xin; Zhou, De-Gui; He, Fei; Zhou, Shao-Chuan; Luo, Da
Source: Self-asserted source
Qiongyi Zhao via ResearcherID

The Next Generation Sequencing and its Effect on the Rice Molecular Design Breeding

Molecular Plant Breeding
2008 | Journal article
Contributors: Zhou, De-Gui; Zhao, Qiong-Yi; Fu, Chong-Yun; Li, Hong Li; Cai, Xue-Fei; Luo, Da; Zhou, Shao-Chuan
Source: Self-asserted source
Qiongyi Zhao via ResearcherID

Peer review (6 reviews for 3 publications/grants)

Review activity for BMC genomics (1)
Review activity for Nature communications (1)
Review activity for The international journal of biochemistry & cell biology. (4)