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ResearcherID: P-3027-2014
Scopus Author ID: 23111686200

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Page 1 of 3

MINFLUX achieves molecular resolution with minimal photons

Nature Photonics
2025-03 | Journal article
DOI: 10.1038/s41566-025-01625-0
Contributors: Lukas Scheiderer; Zach Marin; Jonas Ries
Source: check_circle
Crossref

Build and operation of a custom 3D, multicolor, single-molecule localization microscope

Nature Protocols
2024-08 | Journal article
DOI: 10.1038/s41596-024-00989-x
Contributors: Rory M. Power; Aline Tschanz; Timo Zimmermann; Jonas Ries
Source: check_circle
Crossref

Simple and robust 3D MINFLUX excitation with a variable phase plate

Light: Science & Applications
2024-06-07 | Journal article
DOI: 10.1038/s41377-024-01487-1
Contributors: Takahiro Deguchi; Jonas Ries
Source: check_circle
Crossref

Skp1 proteins are structural components of the synaptonemal complex in C. elegans

Science Advances
2024-02-16 | Journal article
DOI: 10.1126/sciadv.adl4876
Contributors: Joshua M. Blundon; Brenda I. Cesar; Jung Woo Bae; Ivana Čavka; Jocelyn Haversat; Jonas Ries; Simone Köhler; Yumi Kim
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Crossref

Fast and robust 3D MINFLUX excitation with a variable phase plate

2023-11-01 | Preprint
DOI: 10.1101/2023.10.31.564945
Contributors: Takahiro Deguchi; Jonas Ries
Source: check_circle
Crossref

Automated 3D multi-color single-molecule localization microscopy

2023-10-24 | Preprint
DOI: 10.1101/2023.10.23.563122
Contributors: Rory M. Power; Aline Tschanz; Timo Zimmermann; Jonas Ries
Source: check_circle
Crossref

Nanoscale structural organization and stoichiometry of the budding yeast kinetochore

Journal of Cell Biology
2023-04-03 | Journal article
DOI: 10.1083/jcb.202209094
Contributors: Konstanty Cieslinski; Yu-Le Wu; Lisa Nechyporenko; Sarah Janice Hörner; Duccio Conti; Michal Skruzny; Jonas Ries
Source: check_circle
Crossref

Better than a lens? Increasing the signal-to-noise ratio through pupil splitting

Optica
2023-03-20 | Journal article
DOI: 10.1364/OPTICA.474947
Contributors: Jan Becker; Takahiro Deguchi; Alexander Jügler; Ronny Förster; Uwe Hübner; Jonas Ries; Rainer Heintzmann
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Crossref

Direct observation of motor protein stepping in living cells using MINFLUX

Science
2023-03-10 | Journal article | Author
DOI: 10.1126/science.ade2676
Part of ISSN: 0036-8075
Part of ISSN: 1095-9203
Contributors: takahiro deguchi; Malina K. Iwanski; Eva-Maria Schentarra; Christopher Heidebrecht; Lisa Schmidt; Jennifer Heck; Tobias Weihs; Sebastian Schnorrenberg; Philipp Hoess; Sheng Liu et al.
Source: Self-asserted source
Jonas Ries

Clathrin coats partially preassemble and subsequently bend during endocytosis

Journal of Cell Biology
2023-03-06 | Journal article
DOI: 10.1083/jcb.202206038
Contributors: Markus Mund; Aline Tschanz; Yu-Le Wu; Felix Frey; Johanna L. Mehl; Marko Kaksonen; Ori Avinoam; Ulrich S. Schwarz; Jonas Ries
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Crossref

Maximum-likelihood model fitting for quantitative analysis of SMLM data

Nature Methods
2023-01 | Journal article
DOI: 10.1038/s41592-022-01676-z
Contributors: Yu-Le Wu; Philipp Hoess; Aline Tschanz; Ulf Matti; Markus Mund; Jonas Ries
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Crossref

Reply to: Assessment of 3D MINFLUX data for quantitative structural biology in cells

Nature Methods
2023-01 | Journal article
DOI: 10.1038/s41592-022-01695-w
Contributors: Klaus C. Gwosch; Francisco Balzarotti; Jasmin K. Pape; Philipp Hoess; Jan Ellenberg; Jonas Ries; Ulf Matti; Roman Schmidt; Steffen J. Sahl; Stefan W. Hell
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Crossref

Direct observation of motor protein stepping in living cells using MINFLUX

2022-07 | Preprint
DOI: 10.1101/2022.07.25.500391
PPR: PPR523683
Contributors: Deguchi T; Iwanski MK; Schentarra E; Heidebrecht C; Schmidt L; Heck J; Weihs T; Schnorrenberg S; Hoess P; Liu S et al.
Source: Self-asserted source
Jonas Ries via Europe PubMed Central

Photon-free (s)CMOS camera characterization for artifact reduction in high- and super-resolution microscopy

Nature Communications
2022-06-11 | Journal article
DOI: 10.1038/s41467-022-30907-2
Contributors: Robin Diekmann; Joran Deschamps; Yiming Li; Takahiro Deguchi; Aline Tschanz; Maurice Kahnwald; Ulf Matti; Jonas Ries
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Crossref

MicroFPGA: an affordable FPGA platform for microscope control

2022-06-09 | Preprint
DOI: 10.1101/2022.06.07.495178
Contributors: Joran Deschamps; Christian Kieser; Philipp Hoess; Takahiro Deguchi; Jonas Ries
Source: check_circle
Crossref

Global fitting for high-accuracy multi-channel single-molecule localization

Nature Communications
2022-06-06 | Journal article
DOI: 10.1038/s41467-022-30719-4
Contributors: Yiming Li; Wei Shi; Sheng Liu; Ivana Cavka; Yu-Le Wu; Ulf Matti; Decheng Wu; Simone Koehler; Jonas Ries
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Crossref

Assessment of 3D MINFLUX data for quantitative structural biology in cells revisited

2022-05-17 | Preprint
DOI: 10.1101/2022.05.13.491065
Contributors: Klaus C. Gwosch; Francisco Balzarotti; Jasmin K. Pape; Philipp Hoess; Jan Ellenberg; Jonas Ries; Ulf Matti; Roman Schmidt; Steffen J. Sahl; Stefan W. Hell
Source: check_circle
Crossref

Simulating structurally variable Nuclear Pore Complexes for Microscopy

2022-05-17 | Preprint
DOI: 10.1101/2022.05.17.492295
Contributors: Maria Theiss; Jean-Karim Hériché; Craig Russell; David Helekal; Alisdair Soppitt; Jonas Ries; Jan Ellenberg; Alvis Brazma; Virginie Uhlmann
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Crossref

DRP1 interacts directly with BAX to induce its activation and apoptosis

The EMBO Journal
2022-04-19 | Journal article
DOI: 10.15252/embj.2021108587
Contributors: Andreas Jenner; Aida Peña‐Blanco; Raquel Salvador‐Gallego; Begoña Ugarte‐Uribe; Cristiana Zollo; Tariq Ganief; Jan Bierlmeier; Markus Mund; Jason E Lee; Jonas Ries et al.
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Crossref

Nanoscale structural organization and stoichiometry of the budding yeast kinetochore

2021-12-01 | Preprint
DOI: 10.1101/2021.12.01.469648
Contributors: Konstanty Cieslinski; Yu-Le Wu; Lisa Nechyporenko; Sarah Janice Hörner; Duccio Conti; Michal Skruzny; Jonas Ries
Source: check_circle
Crossref

Publisher Correction: Deep learning enables fast and dense single-molecule localization with high accuracy

Nature Methods
2021-11-21 | Journal article
DOI: 10.1038/s41592-021-01305-1
Contributors: Artur Speiser; Lucas-Raphael Müller; Philipp Hoess; Ulf Matti; Christopher J. Obara; Wesley R. Legant; Anna Kreshuk; Jakob H. Macke; Jonas Ries; Srinivas C. Turaga
Source: check_circle
Crossref

Superresolution microscopy reveals partial preassembly and subsequent bending of the clathrin coat during endocytosis

2021-10-13 | Preprint
DOI: 10.1101/2021.10.12.463947
Contributors: Markus Mund; Aline Tschanz; Yu-Le Wu; Felix Frey; Johanna L. Mehl; Marko Kaksonen; Ori Avinoam; Ulrich S. Schwarz; Jonas Ries
Source: check_circle
Crossref

Systematic Tuning of Rhodamine Spirocyclization for Super-resolution Microscopy

Journal of the American Chemical Society
2021-09-15 | Journal article
DOI: 10.1021/jacs.1c05004
Contributors: Nicolas Lardon; Lu Wang; Aline Tschanz; Philipp Hoess; Mai Tran; Elisa D’Este; Jonas Ries; Kai Johnsson
Source: check_circle
Crossref

Deep learning enables fast and dense single-molecule localization with high accuracy

Nature Methods
2021-09-03 | Journal article
DOI: 10.1038/s41592-021-01236-x
Contributors: Artur Speiser; Lucas-Raphael Müller; Philipp Hoess; Ulf Matti; Christopher J. Obara; Wesley R. Legant; Anna Kreshuk; Jakob H. Macke; Jonas Ries; Srinivas C. Turaga
Source: check_circle
Crossref

Maximum-likelihood model fitting for quantitative analysis of SMLM data

2021-08-31 | Other
DOI: 10.1101/2021.08.30.456756
Contributors: Yu-Le Wu; Philipp Hoess; Aline Tschanz; Ulf Matti; Markus Mund; Jonas Ries
Source: check_circle
Crossref

Site-Specifically-Labeled Antibodies for Super-Resolution Microscopy Reveal In Situ Linkage Errors

ACS Nano
2021-07-27 | Journal article
DOI: 10.1021/acsnano.1c03677
Contributors: Susanna M. Früh; Ulf Matti; Philipp R. Spycher; Marina Rubini; Sebastian Lickert; Thomas Schlichthaerle; Ralf Jungmann; Viola Vogel; Jonas Ries; Ingmar Schoen
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Crossref

3D super-resolution fluorescence microscopy maps the variable molecular architecture of the Nuclear Pore Complex

Molecular Biology of the Cell
2021-06-30 | Journal article
DOI: 10.1091/mbc.e20-11-0728
Part of ISSN: 1059-1524
Part of ISSN: 1939-4586
Source: Self-asserted source
Jonas Ries
grade
Preferred source (of 2)‎

Publisher Correction: 3D particle averaging and detection of macromolecular symmetry in localization microscopy

Nature Communications
2021-05-26 | Journal article
DOI: 10.1038/s41467-021-23767-9
Contributors: Hamidreza Heydarian; Maarten Joosten; Adrian Przybylski; Florian Schueder; Ralf Jungmann; Ben van Werkhoven; Jan Keller-Findeisen; Jonas Ries; Sjoerd Stallinga; Mark Bates et al.
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Crossref

Systematic Tuning of Rhodamine Spirocyclization for Super-Resolution Microscopy

2021-05-20 | Other
DOI: 10.1101/2021.05.20.444797
Contributors: Nicolas Lardon; Lu Wang; Aline Tschanz; Philipp Hoess; Mai Tran; Elisa D’Este; Jonas Ries; Kai Johnsson
Source: check_circle
Crossref

3D particle averaging and detection of macromolecular symmetry in localization microscopy

Nature Communications
2021-05-14 | Journal article
DOI: 10.1038/s41467-021-22006-5
Contributors: Hamidreza Heydarian; Maarten Joosten; Adrian Przybylski; Florian Schueder; Ralf Jungmann; Ben van Werkhoven; Jan Keller-Findeisen; Jonas Ries; Sjoerd Stallinga; Mark Bates et al.
Source: check_circle
Crossref

Photon-free (s)CMOS camera characterization for artifact reduction in high- and super-resolution microscopy

2021-04-16 | Preprint
DOI: 10.1101/2021.04.16.440125
Contributors: Robin Diekmann; Joran Deschamps; Yiming Li; Aline Tschanz; Maurice Kahnwald; Ulf Matti; Jonas Ries
Source: check_circle
Crossref

Direct supercritical angle localization microscopy for nanometer 3D superresolution

Nature Communications
2021-02-19 | Journal article
DOI: 10.1038/s41467-021-21333-x
Contributors: Anindita Dasgupta; Joran Deschamps; Ulf Matti; Uwe Hübner; Jan Becker; Sebastian Strauss; Ralf Jungmann; Rainer Heintzmann; Jonas Ries
Source: check_circle
Crossref

Quantitative Data Analysis in Single-Molecule Localization Microscopy

Trends in Cell Biology
2020-11 | Journal article
DOI: 10.1016/j.tcb.2020.07.005
Contributors: Yu-Le Wu; Aline Tschanz; Leonard Krupnik; Jonas Ries
Source: check_circle
Crossref

Deep learning enables fast and dense single-molecule localization with high accuracy

2020-10-26 | Preprint
DOI: 10.1101/2020.10.26.355164
Contributors: Artur Speiser; Lucas-Raphael Müller; Ulf Matti; Christopher J. Obara; Wesley R. Legant; Anna Kreshuk; Jakob H. Macke; Jonas Ries; Srinivas C. Turaga
Source: check_circle
Crossref

Functionalized bead assay to measure 3-dimensional traction forces during T-cell activation

2020-09-24 | Preprint
DOI: 10.1101/2020.09.23.310144
Contributors: Morteza Aramesh; Simon Mergenthal; Marcel Issler; Birgit Plochberger; Florian Weber; Xiao-Hua Qin; Robert Liska; Georg N. Duda; Johannes B. Huppa; Jonas Ries et al.
Source: check_circle
Crossref

SMAP: a modular super-resolution microscopy analysis platform for SMLM data

Nature Methods
2020-09-19 | Journal article
DOI: 10.1038/s41592-020-0938-1
Contributors: Jonas Ries
Source: check_circle
Crossref

Optimizing imaging speed and excitation intensity for single-molecule localization microscopy

Nature Methods
2020-09-02 | Journal article
DOI: 10.1038/s41592-020-0918-5
Contributors: Robin Diekmann; Maurice Kahnwald; Andreas Schoenit; Joran Deschamps; Ulf Matti; Jonas Ries
Source: check_circle
Crossref

SMAP – A Modular Superresolution Microscopy Analysis Platform for SMLM Data

2020-07-26 | Preprint
DOI: 10.1101/2020.07.24.219188
Contributors: Jonas Ries
Source: check_circle
Crossref

Accurate 4Pi single-molecule localization using an experimental PSF model

Optics Letters
2020-07-01 | Journal article
DOI: 10.1364/OL.397754
Contributors: Yiming Li; Elena Buglakova; Yongdeng Zhang; Jervis Vermal Thevathasan; Joerg Bewersdorf; Jonas Ries
Source: check_circle
Crossref

Direct Supercritical Angle Localization Microscopy for Nanometer 3D Superresolution

2020-06-26 | Preprint
DOI: 10.1101/2020.06.25.171058
Contributors: Anindita Dasgupta; Joran Deschamps; Ulf Matti; Uwe Hübner; Jan Becker; Sebastian Strauss; Ralf Jungmann; Rainer Heintzmann; Jonas Ries
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Crossref

Identification of novel synaptonemal complex components in C. elegans

Journal of Cell Biology
2020-05-04 | Journal article
DOI: 10.1083/jcb.201910043
Contributors: Matthew E. Hurlock; Ivana Čavka; Lisa E. Kursel; Jocelyn Haversat; Matthew Wooten; Zehra Nizami; Rashi Turniansky; Philipp Hoess; Jonas Ries; Joseph G. Gall et al.
Source: check_circle
Crossref

Accurate 4Pi single-molecule localization using an experimental PSF model

2020-03-19 | Preprint
DOI: 10.1101/2020.03.18.997163
Contributors: Yiming Li; Elena Buglakova; Yongdeng Zhang; Jervis Vermal Thevathasan; Joerg Bewersdorf; Jonas Ries
Source: check_circle
Crossref

EMU: reconfigurable graphical user interfaces for Micro-Manager

2020-03-19 | Preprint
DOI: 10.1101/2020.03.18.997494
Contributors: Joran Deschamps; Jonas Ries
Source: check_circle
Crossref

Nanoscale subcellular architecture revealed by multicolor three-dimensional salvaged fluorescence imaging

Nature Methods
2020-02-06 | Journal article
DOI: 10.1038/s41592-019-0676-4
Contributors: Yongdeng Zhang; Lena K. Schroeder; Mark D. Lessard; Phylicia Kidd; Jeeyun Chung; Yuanbin Song; Lorena Benedetti; Yiming Li; Jonas Ries; Jonathan B. Grimm et al.
Source: check_circle
Crossref

MINFLUX nanoscopy delivers 3D multicolor nanometer resolution in cells

Nature Methods
2020-02-02 | Journal article
DOI: 10.1038/s41592-019-0688-0
Contributors: Klaus C. Gwosch; Jasmin K. Pape; Francisco Balzarotti; Philipp Hoess; Jan Ellenberg; Jonas Ries; Stefan W. Hell
Source: check_circle
Crossref

Cost-efficient open source laser engine for microscopy

Biomedical Optics Express
2020-02-01 | Journal article
DOI: 10.1364/BOE.380815
Contributors: Daniel Schröder; Joran Deschamps; Anindita Dasgupta; Ulf Matti; Jonas Ries
Source: check_circle
Crossref

Topological data analysis quantifies biological nano-structure from single molecule localization microscopy

Bioinformatics
2019-10-18 | Journal article
DOI: 10.1093/bioinformatics/btz788
Part of ISSN: 1367-4803
Part of ISSN: 1460-2059
Source: Self-asserted source
Jonas Ries

A cost-efficient open source laser engine for microscopy

2019-10-15 | Other
DOI: 10.1101/796482
Contributors: Daniel Schröder; Joran Deschamps; Anindita Dasgupta; Ulf Matti; Jonas Ries
Source: check_circle
Crossref

Photoactivation of silicon rhodamines via a light-induced protonation

Nature Communications
2019-10-08 | Journal article
DOI: 10.1038/s41467-019-12480-3
Contributors: Michelle S. Frei; Philipp Hoess; Marko Lampe; Bianca Nijmeijer; Moritz Kueblbeck; Jan Ellenberg; Hubert Wadepohl; Jonas Ries; Stefan Pitsch; Luc Reymond et al.
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Crossref

Direct Visualization of Single Nuclear Pore Complex Proteins Using Genetically‐Encoded Probes for DNA‐PAINT

Angewandte Chemie
2019-09-09 | Journal article
DOI: 10.1002/ange.201905685
Contributors: Thomas Schlichthaerle; Maximilian T. Strauss; Florian Schueder; Alexander Auer; Bianca Nijmeijer; Moritz Kueblbeck; Vilma Jimenez Sabinina; Jervis V. Thevathasan; Jonas Ries; Jan Ellenberg et al.
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Crossref
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Peer review (11 reviews for 8 publications/grants)

Review activity for ACS chemical biology. (1)
Review activity for ACS nano. (1)
Review activity for ACS photonics. (1)
Review activity for Light, science & applications. (1)
Review activity for Nature biotechnology. (1)
Review activity for Nature communications (3)
Review activity for Nature methods. (2)
Review activity for TrAC. Trends in analytical chemistry (Regular ed.) (1)
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