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Scopus Author ID: 51161131000
Scopus Author ID: 51161131000
SciProfiles: 1777209

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Employment (1)

National Yang Ming Chiao Tung University: Hsinchu, TW

2025-02-01 to present | Assistant Professor (Department of Biological Science and Technology)
Employment
Source: Self-asserted source
Yi-Ju Chen

Education and qualifications (5)

National Yang Ming Chiao Tung University: Hsinchu, TW

2025-02-01 to present | Assistant Professor (Department of Biological Science and Technology)
Education
Source: Self-asserted source
Yi-Ju Chen

Academia Sinica: Taipei, Taiwan, TW

2021-05-25 to present | Research Specialist
Qualification
Source: Self-asserted source
Yi-Ju Chen

Academia Sinica: Taipei, Taiwan, TW

2017-08-01 to 2021-05-24 | Research Scholar & Project Manager
Qualification
Source: Self-asserted source
Yi-Ju Chen

Academia Sinica: Taipei, Taiwan, TW

2015-08-01 to 2017-07-31 | Distinguished Research Scholar
Qualification
Source: Self-asserted source
Yi-Ju Chen

Academia Sinica: Taipei, Taiwan, TW

2012-08-01 to 2015-07-31 | Postdoctoral Fellow (Institute of Chemistry)
Education
Source: Self-asserted source
Yi-Ju Chen

Works (50 of 60)

Items per page:
Page 1 of 2

Metal ion-enhanced ZIC-cHILIC StageTip for N-Glycoproteomic and Phosphoproteomic Profiling in EGFR-mutated Lung Cancer Cells

Molecular & Cellular Proteomics
2025-03 | Journal article
DOI: 10.1016/j.mcpro.2025.100957
Contributors: Yi-Ju Chen; Yan-Lin Chen; Kun-Hao Chang; Hsiang-Chun Cheng; Chiao-Chun Chang; Yu-Ju Chen
Source: check_circle
Crossref

A Boron-Dependent Antibiotic Derived from a Calcium-Dependent Antibiotic

Angewandte Chemie - International Edition
2024 | Journal article
DOI: 10.1002/anie.202317522
EID:

2-s2.0-85180704711

Part of ISSN: 15213773 14337851
Contributors: Chiou, S.-L.; Chen, Y.-J.; Lee, C.-T.; Ho, M.N.; Miao, J.; Kuo, P.-C.; Hsu, C.-C.; Lin, Y.-S.; Chu, J.
Source: Self-asserted source
Yi-Ju Chen via Scopus - Elsevier

Developing tyrosine phosphoproteome libraries and dual quantification using a hybrid DIA approach

Journal of the Chinese Chemical Society
2024 | Journal article
DOI: 10.1002/jccs.202400136
EID:

2-s2.0-85196323086

Part of ISSN: 21926549 00094536
Contributors: Chang, C.-C.; Tai, I.-Y.; Chan, S.-S.; Lin, Y.-H.; Chen, Y.-J.; Chen, Y.-J.
Source: Self-asserted source
Yi-Ju Chen via Scopus - Elsevier
grade
Preferred source (of 2)‎

NME3 is a gatekeeper for DRP1-dependent mitophagy in hypoxia

Nature Communications
2024 | Journal article
DOI: 10.1038/s41467-024-46385-7
EID:

2-s2.0-85187740568

Part of ISSN: 20411723
Contributors: Chen, C.-W.; Su, C.; Huang, C.-Y.; Huang, X.-R.; Cuili, X.; Chao, T.; Fan, C.-H.; Ting, C.-W.; Tsai, Y.-W.; Yang, K.-C. et al.
Source: Self-asserted source
Yi-Ju Chen via Scopus - Elsevier

Proteomic profiling of tumor microenvironment and prognosis risk prediction in stage I lung adenocarcinoma

Lung Cancer
2024 | Journal article
DOI: 10.1016/j.lungcan.2024.107791
EID:

2-s2.0-85190110598

Part of ISSN: 18728332 01695002
Contributors: Lu, Y.-F.; Chang, Y.-H.; Chen, Y.-J.; Hsieh, M.-S.; Lin, M.-W.; Hsu, H.-H.; Han, C.-L.; Chen, Y.-J.; Yu, S.-L.; Chen, J.-S. et al.
Source: Self-asserted source
Yi-Ju Chen via Scopus - Elsevier

Structure Prediction and Protein Engineering Yield New Insights into Microcin J25 Precursor Recognition

ACS Chemical Biology
2024 | Journal article
DOI: 10.1021/acschembio.4c00251
EID:

2-s2.0-85201696076

Part of ISSN: 15548937 15548929
Contributors: Tan, H.-N.; Liu, W.-Q.; Ho, J.; Chen, Y.-J.; Shieh, F.-J.; Liao, H.-T.; Wang, S.-P.; Hegemann, J.D.; Chang, C.-Y.; Chu, J.
Source: Self-asserted source
Yi-Ju Chen via Scopus - Elsevier

Wild mungbean resistance to the nematode Meloidogyne enterolobii involves the induction of phenylpropanoid metabolism and lignification

Physiologia Plantarum
2024 | Journal article
DOI: 10.1111/ppl.14533
EID:

2-s2.0-85205446413

Part of ISSN: 13993054 00319317
Contributors: Lee, S.-K.; Liao, P.-Z.; Lin, C.-Y.; Chen, H.-W.; Hsieh, M.-S.; Lin, Y.-P.; Chen, Y.-J.; Hong, J.-H.; Chiang, Y.-L.; Cheng, C.-P. et al.
Source: Self-asserted source
Yi-Ju Chen via Scopus - Elsevier

The branched N-glycan of PD-L1 predicts immunotherapy responses in patients with recurrent/metastatic HNSCC

Oncogenesis
2024-10-02 | Journal article
DOI: 10.1038/s41389-024-00532-3
Contributors: Huai-Cheng Huang; Yen-Lin Huang; Yi-Ju Chen; Hsin-Yi Wu; Chia-Lang Hsu; Hsiang-Fong Kao; Bin-Chi Liao; Min-Shu Hsieh; Neng-Yu Lin; Yu-Hao Liao et al.
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Data Independent Acquisition Mass Spectrometry Enhanced Personalized Glycosylation Profiling of Haptoglobin in Hepatocellular Carcinoma

Journal of Proteome Research
2024-08-02 | Journal article
DOI: 10.1021/acs.jproteome.4c00227
Contributors: Tiara Pradita; Yi-Ju Chen; Tung-Hung Su; Kun-Hao Chang; Pei-Jer Chen; Yu-Ju Chen
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Bioengineering vaccinia virus envelope protein to purify size-specific anticoagulant oligosaccharides from heterogeneous heparins

Research Square
2023 | Other
DOI: 10.21203/rs.3.rs-3031779
EID:

2-s2.0-85169710253
Contributors: Carillo, K.; Mernie, E.; Tamang, H.; Chen, Y.-J.; Tseng, M.-C.; Lou, Y.-C.; Chen, C.-C.; Chen, Y.-J.; Tzou, D.-L.
Source: Self-asserted source
Yi-Ju Chen via Scopus - Elsevier

Inducible chemical defenses in wild mungbean confer resistance to Spodoptera litura and possibly at the expense of drought tolerance

Environmental and Experimental Botany
2023 | Journal article
DOI: 10.1016/j.envexpbot.2022.105100
EID:

2-s2.0-85140314415

Part of ISSN: 00988472
Contributors: Chen, Y.-J.; Cheah, B.H.; Lin, C.-Y.; Ku, Y.-T.; Kuo, C.-H.; Zhang, Y.-Y.; Chen, B.-R.; Nean, O.; Hsieh, C.-H.; Yeh, P.-M. et al.
Source: Self-asserted source
Yi-Ju Chen via Scopus - Elsevier

Site-Specific and Multiple Fluorogenic Metabolic Glycan Labeling and Glycoproteomic Profiling in Live Cells

ChemBioChem
2023 | Journal article
DOI: 10.1002/cbic.202300522
EID:

2-s2.0-85167442250

Part of ISSN: 14397633 14394227
Contributors: Leong, S.K.; Chen, Y.-J.; Hsiao, J.-C.; Tsai, C.-Y.; Shie, J.-J.
Source: Self-asserted source
Yi-Ju Chen via Scopus - Elsevier

Tissue Proteogenomic Landscape Reveals the Role of Uncharacterized SEL1L3 in Progression and Immunotherapy Response in Lung Adenocarcinoma

Journal of Proteome Research
2023 | Journal article
DOI: 10.1021/acs.jproteome.2c00382
EID:

2-s2.0-85142001157

Part of ISSN: 15353907 15353893
Contributors: Shen, C.-Y.; Chang, W.-H.; Chen, Y.-J.; Weng, C.-W.; Regmi, P.; Kier, M.K.K.; Su, K.-Y.; Chang, G.-C.; Chen, J.-S.; Chen, Y.-J. et al.
Source: Self-asserted source
Yi-Ju Chen via Scopus - Elsevier
grade
Preferred source (of 2)‎

Investigating a Boronate-Affinity-Guided Acylation Reaction for Labelling Native Antibodies

Chemistry - A European Journal
2022 | Journal article
DOI: 10.1002/chem.202104178
EID:

2-s2.0-85124827809

Part of ISSN: 15213765 09476539
Contributors: Adak, A.K.; Huang, K.-T.; Liao, C.-Y.; Lee, Y.-J.; Kuo, W.-H.; Huo, Y.-R.; Li, P.-J.; Chen, Y.-J.; Chen, B.-S.; Chen, Y.-J. et al.
Source: Self-asserted source
Yi-Ju Chen via Scopus - Elsevier

Molecular Basis and Role of Siglec-7 Ligand Expression on Chronic Lymphocytic Leukemia B Cells

Frontiers in Immunology
2022 | Journal article
DOI: 10.3389/fimmu.2022.840388
EID:

2-s2.0-85132081370

Part of ISSN: 16643224
Contributors: Chang, L.-Y.; Liang, S.-Y.; Lu, S.-C.; Tseng, H.C.; Tsai, H.-Y.; Tang, C.-J.; Sugata, M.; Chen, Y.-J.; Chen, Y.-J.; Wu, S.-J. et al.
Source: Self-asserted source
Yi-Ju Chen via Scopus - Elsevier

Reduced symmetric dimethylation stabilizes vimentin and promotes metastasis in MTAP-deficient lung cancer

EMBO Reports
2022 | Journal article
DOI: 10.15252/embr.202154265
EID:

2-s2.0-85133023256

Part of ISSN: 14693178 1469221X
Contributors: Chang, W.-H.; Chen, Y.-J.; Hsiao, Y.-J.; Chiang, C.-C.; Wang, C.-Y.; Chang, Y.-L.; Hong, Q.-S.; Lin, C.-Y.; Lin, S.-U.; Chang, G.-C. et al.
Source: Self-asserted source
Yi-Ju Chen via Scopus - Elsevier
grade
Preferred source (of 2)‎

Unveiling a novel serpinB2-tripeptidyl peptidase II signaling axis during senescence

Journal of Cell Science
2022 | Journal article
DOI: 10.1242/jcs.259513
EID:

2-s2.0-85130660313

Part of ISSN: 14779137 00219533
Contributors: Liao, C.-L.; Hu, R.-C.; Liao, M.-S.; Chen, Y.-J.; Chen, Y.-P.; Hsieh, H.-H.; Tai, C.-H.; Chou, T.-C.; Chu, C.-Y.; Chen, Y.-J. et al.
Source: Self-asserted source
Yi-Ju Chen via Scopus - Elsevier

MITF functions as a tumor suppressor in non-small cell lung cancer beyond the canonically oncogenic role

Aging
2021 | Journal article
DOI: 10.18632/aging.202171
EID:

2-s2.0-85099537315

Part of ISSN: 19454589
Contributors: Hsiao, Y.-J.; Chang, W.-H.; Chen, H.-Y.; Hsu, Y.-C.; Chiu, S.-C.; Chiang, C.-C.; Chang, G.-C.; Chen, Y.-J.; Wang, C.-Y.; Chen, Y.-M. et al.
Source: Self-asserted source
Yi-Ju Chen via Scopus - Elsevier

Zic-chilic functionalized magnetic nanoparticle for rapid and sensitive glycopeptide enrichment from < 1 µl serum

Nanomaterials
2021 | Journal article
DOI: 10.3390/nano11092159
EID:

2-s2.0-85113815163

Part of ISSN: 20794991
Contributors: Pradita, T.; Chen, Y.-J.; Mernie, E.G.; Bendulo, S.N.; Chen, Y.-J.
Source: Self-asserted source
Yi-Ju Chen via Scopus - Elsevier
grade
Preferred source (of 3)‎

ZIC-cHILIC-Based StageTip for Simultaneous Glycopeptide Enrichment and Fractionation toward Large-Scale N-Sialoglycoproteomics

Analytical Chemistry
2021 | Journal article
DOI: 10.1021/acs.analchem.1c03224
EID:

2-s2.0-85119914453

Part of ISSN: 15206882 00032700
Contributors: Chen, Y.-J.; Yen, T.-C.; Lin, Y.-H.; Chen, Y.-L.; Khoo, K.-H.; Chen, Y.-J.
Source: Self-asserted source
Yi-Ju Chen via Scopus - Elsevier
grade
Preferred source (of 2)‎

Proteogenomics of Non-smoking Lung Cancer in East Asia Delineates Molecular Signatures of Pathogenesis and Progression

Cell
2020 | Journal article
DOI: 10.1016/j.cell.2020.06.012
EID:

2-s2.0-85087414083

Part of ISSN: 10974172 00928674
Contributors: Chen, Y.-J.; Roumeliotis, T.I.; Chang, Y.-H.; Chen, C.-T.; Han, C.-L.; Lin, M.-H.; Chen, H.-W.; Chang, G.-C.; Chang, Y.-L.; Wu, C.-T. et al.
Source: Self-asserted source
Yi-Ju Chen via Scopus - Elsevier

Proteogenomics of Non-smoking Lung Cancer in East Asia Delineates Molecular Signatures of Pathogenesis and Progression

Cell
2020-07-09 | Journal article
PMID: 32649875
Source: Self-asserted source
Yi-Ju Chen

Palmitoyl acyltransferase activity of ZDHHC13 regulates skin barrier development partly by controlling PADi3 and TGM1 protein stability.

The Journal of investigative dermatology
2019-10-25 | Journal article
DOI: 10.1016/j.jid.2019.09.017
PMID: 31669413
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 3)‎

High Glucose Triggers Nucleotide Imbalance through O-GlcNAcylation of Key Enzymes and Induces KRAS Mutation in Pancreatic Cells.

Cell metabolism
2019-03-04 | Journal article
DOI: 10.1016/j.cmet.2019.02.005
PMID: 30853214
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 2)‎

Glycoproteomic Alterations in Drug-Resistant Nonsmall Cell Lung Cancer Cells Revealed by Lectin Magnetic Nanoprobe-Based Mass Spectrometry.

Journal of proteome research
2018-10-17 | Journal article
DOI: 10.1021/acs.jproteome.8b00433
PMID: 30261726
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 2)‎

FAM198B Is Associated with Prolonged Survival and Inhibits Metastasis in Lung Adenocarcinoma via Blockage of ERK-Mediated MMP-1 Expression.

Clinical cancer research : an official journal of the American Association for Cancer Research
2017-12-07 | Journal article
DOI: 10.1158/1078-0432.ccr-17-1347
PMID: 29217529
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 2)‎

iTop-Q: an Intelligent Tool for Top-down Proteomics Quantitation Using DYAMOND Algorithm.

Analytical chemistry
2017-12-06 | Journal article
DOI: 10.1021/acs.analchem.7b02343
PMID: 29165996
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 2)‎

Identification of Siglec Ligands Using a Proximity Labeling Method.

Journal of proteome research
2017-09-22 | Journal article
DOI: 10.1021/acs.jproteome.7b00625
PMID: 28899088
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 2)‎

Role of S-Palmitoylation by ZDHHC13 in Mitochondrial function and Metabolism in Liver.

Scientific reports
2017-05-19 | Journal article
DOI: 10.1038/s41598-017-02159-4
PMID: 28526873
PMC: PMC5438363
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 3)‎

One-Pot Two-Nanoprobe Assay Uncovers Targeted Glycoprotein Biosignature.

Analytical chemistry
2017-03-21 | Journal article
DOI: 10.1021/acs.analchem.6b04396
PMID: 28323416
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 2)‎

K63-polyubiquitinated HAUSP deubiquitinates HIF-1α and dictates H3K56 acetylation promoting hypoxia-induced tumour progression.

Nature communications
2016-12-09 | Journal article
DOI: 10.1038/ncomms13644
PMID: 27934968
PMC: PMC5155157
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 2)‎

Temporal regulation of Lsp1 O-GlcNAcylation and phosphorylation during apoptosis of activated B cells.

Nature communications
2016-08-24 | Journal article
DOI: 10.1038/ncomms12526
PMID: 27555448
PMC: PMC4999498
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 2)‎

A photo-cleavable biotin affinity tag for the facile release of a photo-crosslinked carbohydrate-binding protein.

Bioorganic & medicinal chemistry
2016-01-27 | Journal article
DOI: 10.1016/j.bmc.2016.01.050
PMID: 26857483
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 2)‎

Slug is temporally regulated by cyclin e in cell cycle and controls genome stability

Oncogene
2015 | Journal article
DOI: 10.1038/onc.2014.58
EID:

2-s2.0-84928298274

Part of ISSN: 14765594 09509232
Contributors: Wang, W.-L.; Huang, H.-C.; Kao, S.-H.; Hsu, Y.-C.; Wang, Y.-T.; Li, K.-C.; Chen, Y.-J.; Yu, S.-L.; Wang, S.-P.; Hsiao, T.-H. et al.
Source: Self-asserted source
Yi-Ju Chen via Scopus - Elsevier

Mining Missing Membrane Proteins by High-pH Reverse-Phase StageTip Fractionation and Multiple Reaction Monitoring Mass Spectrometry.

Journal of proteome research
2015-08-06 | Journal article
DOI: 10.1021/acs.jproteome.5b00477
PMID: 26202522
PMC: PMC4761227
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 2)‎

Cyclic Alopecia and Abnormal Epidermal Cornification in Zdhhc13-Deficient Mice Reveal the Importance of Palmitoylation in Hair and Skin Differentiation.

The Journal of investigative dermatology
2015-06-29 | Journal article
DOI: 10.1038/jid.2015.240
PMID: 26121212
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 2)‎

GSHSite: exploiting an iteratively statistical method to identify s-glutathionylation sites with substrate specificity.

PloS one
2015-04-07 | Journal article
DOI: 10.1371/journal.pone.0118752
PMID: 25849935
PMC: PMC4388702
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 2)‎

Glutathionylspermidine in the modification of protein SH groups: the enzymology and its application to study protein glutathionylation.

Molecules (Basel, Switzerland)
2015-01-15 | Journal article
DOI: 10.3390/molecules20011452
PMID: 25599150
PMC: PMC6272389
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 2)‎

Characterization and identification of protein O-GlcNAcylation sites with substrate specificity.

BMC bioinformatics
2014-12-08 | Journal article
DOI: 10.1186/1471-2105-15-S16-S1
PMID: 25521204
PMC: PMC4290634
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 2)‎

dbSNO 2.0: a resource for exploring structural environment, functional and disease association and regulatory network of protein S-nitrosylation.

Nucleic acids research
2014-11-15 | Journal article
DOI: 10.1093/nar/gku1176
PMID: 25399423
PMC: PMC4383970
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 2)‎

Decoding the s-nitrosoproteomic atlas in individualized human colorectal cancer tissues using a label-free quantitation strategy.

Journal of proteome research
2014-08-04 | Journal article
DOI: 10.1021/pr5002675
PMID: 25040305
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 2)‎

An intelligent system for identifying acetylated lysine on histones and nonhistone proteins.

BioMed research international
2014-07-24 | Journal article
DOI: 10.1155/2014/528650
PMID: 25147802
PMC: PMC4132336
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 2)‎

Chromosome-centric Human Proteome Project (C-HPP): Chromosome 12.

Journal of proteome research
2014-06-24 | Journal article
DOI: 10.1021/pr500009j
PMID: 24831074
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 2)‎

dbGSH: a database of S-glutathionylation.

Bioinformatics (Oxford, England)
2014-04-29 | Journal article
DOI: 10.1093/bioinformatics/btu301
PMID: 24790154
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 2)‎

RegPhos 2.0: an updated resource to explore protein kinase-substrate phosphorylation networks in mammals.

Database : the journal of biological databases and curation
2014-04-25 | Journal article
DOI: 10.1093/database/bau034
PMID: 24771658
PMC: PMC3999940
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 2)‎

Palmitoyl acyltransferase, Zdhhc13, facilitates bone mass acquisition by regulating postnatal epiphyseal development and endochondral ossification: a mouse model.

PloS one
2014-03-17 | Journal article
DOI: 10.1371/journal.pone.0092194
PMID: 24637783
PMC: PMC3956893
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 2)‎

Methods for detection and characterization of protein S-nitrosylation.

Methods (San Diego, Calif.)
2013-04-27 | Journal article
DOI: 10.1016/j.ymeth.2013.04.016
PMID: 23628946
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 2)‎

DbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications.

Nucleic acids research
2012-11-27 | Journal article
DOI: 10.1093/nar/gks1229
PMID: 23193290
PMC: PMC3531199
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 2)‎

dbSNO: a database of cysteine S-nitrosylation.

Bioinformatics (Oxford, England)
2012-07-10 | Journal article
DOI: 10.1093/bioinformatics/bts436
PMID: 22782549
Source: Self-asserted source
Yi-Ju Chen
grade
Preferred source (of 2)‎

A genuine intramolecular proton relay system undergoing excited-state double proton transfer reaction

Journal of Physical Chemistry Letters
2011 | Journal article
DOI: 10.1021/jz201439w
EID:

2-s2.0-84863323580

Part of ISSN: 19487185
Contributors: Tang, K.-C.; Chen, C.-L.; Chuang, H.-H.; Chen, J.-L.; Chen, Y.-J.; Lin, Y.-C.; Shen, J.-Y.; Hu, W.-P.; Chou, P.-T.
Source: Self-asserted source
Yi-Ju Chen via Scopus - Elsevier
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