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Scopus Author ID: 57216390386

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Employment (2)

International Institute of Molecular and Cell Biology: Warsaw, PL

2023-11-01 to present | Researcher
Employment
Source: Self-asserted source
Bartłomiej Surpeta

International Institute of Molecular and Cell Biology: Warsaw, PL

2022-01-01 to 2023-10-31 | Research Assistant
Employment
Source: Self-asserted source
Bartłomiej Surpeta

Education and qualifications (3)

Adam Mickiewicz University in Poznań: Poznań, PL

2017-10-01 to 2023-10-27 | PhD, Biological Sciences (Faculty of Biology, Institute of Molecular Biology and Biotechnology, Department of Gene Expression, Laboratory of Biomolecular Interactions and Transport)
Education
Source: Self-asserted source
Bartłomiej Surpeta

Wrocław University of Technology: Wrocław, PL

2016-02-17 to 2017-07-17 | Master of Science, Bioinformatics (Faculty of Chemistry, Advanced Materials Engineering and Modelling Group)
Education
Source: Self-asserted source
Bartłomiej Surpeta

Wrocław University of Technology: Wrocław, PL

2012-10-01 to 2016-02-17 | Bachelor of Science, Biotechnology (Faculty of Chemistry)
Education
Source: Self-asserted source
Bartłomiej Surpeta

Funding (2)

Racjonalna inżynieria acylazy penicyliny G z E. coli w celu zwalczania bakterii w oparciu o wygaszanie kworum jako skutecznej strategii przeciwko antybiotykooporności i zanieczyszczeniu biologicznemu

2022-01-17 to 2023-01-16 | Grant
National Science Center (Krakow, PL)
URL: https://app.dimensions.ai/details/grant/grant.10023093
GRANT_NUMBER: 2021/41/N/NZ2/01365
Source: Self-asserted source
Bartłomiej Surpeta via DimensionsWizard

Opracowanie metody umożliwiającej rutynową i wiarygodną analizę tuneli transportowych w białkach

2018-10-01 to 2021-09-30 | Grant
National Science Center (Krakow, PL)
URL: https://app.dimensions.ai/details/grant/grant.7872039
GRANT_NUMBER:

2017/25/B/NZ1/01307
Source: Self-asserted source
Bartłomiej Surpeta via DimensionsWizard

Works (13)

Benchmarking coarse-grained simulation methods for investigation of transport tunnels in enzymes

2024-09-19 | Preprint
DOI: 10.1101/2024.09.16.613244
Contributors: Nishita Mandal; Jan A. Stevens; Adolfo B. Poma; Bartlomiej Surpeta; Carlos Sequeiros-Borja; Aravind Selvaram Thirunavukarasu; Siewert J. Marrink; Jan Brezovsky
Source: check_circle
Crossref

Reinforcing Tunnel Network Exploration in Proteins Using Gaussian Accelerated Molecular Dynamics

Journal of Chemical Information and Modeling
2024-08-26 | Journal article
DOI: 10.1021/acs.jcim.4c00966
Contributors: Nishita Mandal; Bartlomiej Surpeta; Jan Brezovsky
Source: check_circle
Crossref

Water will Find Its Way: Transport through Narrow Tunnels in Hydrolases

Journal of Chemical Information and Modeling
2024-08-12 | Journal article
DOI: 10.1021/acs.jcim.4c00094
Contributors: Carlos Sequeiros-Borja; Bartlomiej Surpeta; Aravind Selvaram Thirunavukarasu; Cedrix J. Dongmo Foumthuim; Igor Marchlewski; Jan Brezovsky
Source: check_circle
Crossref

Incorporating Prior Knowledge in the Seeds of Adaptive Sampling Molecular Dynamics Simulations of Ligand Transport in Enzymes with Buried Active Sites

Journal of Chemical Theory and Computation
2024-07-23 | Journal article
DOI: 10.1021/acs.jctc.4c00452
Contributors: Dheeraj Kumar Sarkar; Bartlomiej Surpeta; Jan Brezovsky
Source: check_circle
Crossref

Reinforcing Tunnel Network Exploration in Proteins Using Gaussian Accelerated Molecular Dynamics

2024-05-03 | Preprint
DOI: 10.1101/2024.04.30.591887
Contributors: Nishita Mandal; Bartlomiej Surpeta; Jan Brezovsky
Source: check_circle
Crossref

Divide-and-conquer approach to study protein tunnels in long molecular dynamics simulations

MethodsX
2023 | Journal article
DOI: 10.1016/j.mex.2022.101968
Part of ISSN: 2215-0161
Contributors: Carlos Sequeiros-Borja; Bartlomiej Surpeta; Igor Marchlewski; Jan Brezovsky
Source: Self-asserted source
Bartłomiej Surpeta

Incorporating prior knowledge to seeds of adaptive sampling molecular dynamics simulations of ligand transport in enzymes with buried active sites

2023-09-23 | Preprint
DOI: 10.1101/2023.09.21.558608
Contributors: Dheeraj Kumar Sarkar; Bartlomiej Surpeta; Jan Brezovsky
Source: check_circle
Crossref

Engineering dynamic gates in binding pocket of penicillin G acylase to selectively degrade bacterial signaling molecules

2023-05-09 | Preprint
DOI: 10.1101/2023.05.09.538545
Contributors: Michal Grulich; Bartlomiej Surpeta; Andrea Palyzova; Helena Maresova; Jiri Zahradnik; Jan Brezovsky
Source: check_circle
Crossref

Common Dynamic Determinants Govern Quorum Quenching Activity in N-Terminal Serine Hydrolases

ACS Catalysis
2022-06-03 | Journal article
DOI: 10.1021/acscatal.2c00569
Contributors: Bartlomiej Surpeta; Michal Grulich; Andrea Palyzová; Helena Marešová; Jan Brezovsky
Source: check_circle
Crossref

TransportTools: a library for high-throughput analyses of internal voids in biomolecules and ligand transport through them

Bioinformatics
2022-03-04 | Journal article
DOI: 10.1093/bioinformatics/btab872
Part of ISSN: 1367-4803
Part of ISSN: 1460-2059
Source: Self-asserted source
Bartłomiej Surpeta

Quorum Quenching Enzymes - Understanding Molecular Determinants Responsible for Activity of N-Terminal Serine Hydrolases to Increase their Strong Antibacterial Potency

Biophysical Journal
2021-02 | Journal article
DOI: 10.1016/j.bpj.2020.11.1942
Part of ISSN: 0006-3495
Contributors: Bartłomiej Surpeta; Bartlomiej Surpeta; Michal Grulich; Jan Brezovsky
Source: Self-asserted source
Bartłomiej Surpeta

Recent advances in user-friendly computational tools to engineer protein function

Briefings in Bioinformatics
2020-07-31 | Journal article
DOI: 10.1093/bib/bbaa150
Part of ISSN: 1467-5463
Part of ISSN: 1477-4054
Source: Self-asserted source
Bartłomiej Surpeta

Dynamics, a Powerful Component of Current and Future in Silico Approaches for Protein Design and Engineering

International Journal of Molecular Sciences
2020-04-14 | Journal article
DOI: 10.3390/ijms21082713
Part of ISSN: 1422-0067
Source: Self-asserted source
Bartłomiej Surpeta
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