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Works (8)

Thrifty wide-context models of B cell receptor somatic hypermutation

2025-03-18 | Preprint
DOI: 10.7554/eLife.105471
Contributors: Kevin Sung; Mackenzie M Johnson; Will Dumm; Noah Simon; Hugh Haddox; Julia Fukuyama; Frederick A Matsen, IV
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Crossref

Thrifty wide-context models of B cell receptor somatic hypermutation

2025-03-18 | Preprint
DOI: 10.7554/eLife.105471.1
Contributors: Kevin Sung; Mackenzie M Johnson; Will Dumm; Noah Simon; Hugh Haddox; Julia Fukuyama; Frederick A Matsen, IV
Source: check_circle
Crossref

Thrifty wide-context models of B cell receptor somatic hypermutation

2024-12-01 | Preprint
DOI: 10.1101/2024.11.26.625407
Contributors: Kevin Sung; Mackenzie M. Johnson; Will Dumm; Noah Simon; Hugh Haddox; Julia Fukuyama; Frederick A Matsen, IV
Source: check_circle
Crossref

Multiscale analysis of count data through topic alignment

Biostatistics
2023-10-18 | Journal article
DOI: 10.1093/biostatistics/kxac018
Contributors: Julia Fukuyama; Kris Sankaran; Laura Symul
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Crossref

A convenient correspondence between k-mer-based metagenomic distances and phylogenetically-informed β-diversity measures

PLOS Computational Biology
2023-01-06 | Journal article
DOI: 10.1371/journal.pcbi.1010821
Contributors: Hongxuan Zhai; Luis Pedro Coelho; Julia Fukuyama
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Crossref

Local biplots for multidimensional scaling, with application to the microbiome

Journal of Computational and Graphical Statistics
2022-07-03 | Journal article
DOI: 10.1080/10618600.2021.2024438
Part of ISSN: 1061-8600
Part of ISSN: 1537-2715
Contributors: Julia Fukuyama
Source: Self-asserted source
Julia Fukuyama

Emphasis on the deep or shallow parts of the tree provides a new characterization of phylogenetic distances

Genome Biology
2019-12 | Journal article
DOI: 10.1186/s13059-019-1735-y
Contributors: Julia Fukuyama
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Crossref

Adaptive gPCA: A method for structured dimensionality reduction with applications to microbiome data

The Annals of Applied Statistics
2019-06-01 | Journal article
DOI: 10.1214/18-aoas1227
Part of ISSN: 1932-6157
Contributors: Julia Fukuyama
Source: Self-asserted source
Julia Fukuyama
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