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Works (37)

Functional and phylogenomic approaches reveal novel types of M42 peptidases with contrasted enzymatic properties in Archaea

2025-03-02 | Preprint
DOI: 10.1101/2025.02.26.640355
Contributors: Emilie Chagny; Najwa Taib; Daphna Fenel; Eric Girard; Simonetta Gribaldo; Didier Flament; Bruno Franzetti
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Horizontal gene transfer of the functional archaellum machinery to Bacteria

2025-02-02 | Preprint
DOI: 10.1101/2025.02.02.636118
Contributors: Shamphavi Sivabalasarma; Najwa Taib; Clara L Mollat; Marie Joest; Stefan Steimle; Simonetta Gribaldo; Sonja-Verena Albers
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Terrabacteria: redefining bacterial envelope diversity, biogenesis and evolution

Nature Reviews Microbiology
2025-01 | Journal article
DOI: 10.1038/s41579-024-01088-0
Contributors: Basile Beaud Benyahia; Najwa Taib; Christophe Beloin; Simonetta Gribaldo
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Sheaths are diverse and abundant cell surface layers in Archaea

2024-11-04 | Other
DOI: 10.1093/ismejo/wrae225
Contributors: Simonetta Gribaldo; Sofia Medvedeva; Guillaume Borrel
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Stable coexistence between an archaeal virus and the dominant methanogen of the human gut

Nature Communications
2024-09-04 | Journal article
DOI: 10.1038/s41467-024-51946-x
Contributors: Diana P. Baquero; Sofia Medvedeva; Camille Martin-Gallausiaux; Nika Pende; Anna Sartori-Rupp; Stéphane Tachon; Thierry Pedron; Laurent Debarbieux; Guillaume Borrel; Simonetta Gribaldo et al.
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Identification ofV. parvulaandS. gordoniiadhesins mediating co-aggregation and its impact on physiology and mixed biofilm structure

2024-07-16 | Preprint
DOI: 10.1101/2024.07.16.603716
Contributors: Louis Dorison; Nathalie Béchon; Camille Martin-Gallausiaux; Susan Chamorro-Rodriguez; Yakov Vitrenko; Rania Ouazahrou; Romain Villa; Julien Deschamps; Romain Briandet; Simonetta Gribaldo et al.
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Proteins containing photosynthetic reaction centre domains modulate FtsZ-based archaeal cell division

Nature Microbiology
2024-03-04 | Journal article
DOI: 10.1038/s41564-024-01600-5
Contributors: Phillip Nußbaum; Danguole Kureisaite-Ciziene; Dom Bellini; Chris van der Does; Marko Kojic; Najwa Taib; Anna Yeates; Maxime Tourte; Simonetta Gribaldo; Martin Loose et al.
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Diversification of division mechanisms in endospore-forming bacteria revealed by analyses of peptidoglycan synthesis in Clostridioides difficile

Nature Communications
2023-12-02 | Journal article
DOI: 10.1038/s41467-023-43595-3
Contributors: Shailab Shrestha; Najwa Taib; Simonetta Gribaldo; Aimee Shen
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Components of iron–Sulfur cluster assembly machineries are robust phylogenetic markers to trace the origin of mitochondria and plastids

PLOS Biology
2023-11-08 | Journal article
DOI: 10.1371/journal.pbio.3002374
Contributors: Pierre Simon Garcia; Filipa L. Sousa; Frédéric Barras; Simonetta Gribaldo
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Dual function of OmpM as outer membrane tether and nutrient uptake channel in diderm Firmicutes

Nature Communications
2023-11-06 | Journal article
DOI: 10.1038/s41467-023-42601-y
Contributors: Augustinas Silale; Yiling Zhu; Jerzy Witwinowski; Robert E. Smith; Kahlan E. Newman; Satya P. Bhamidimarri; Arnaud Baslé; Syma Khalid; Christophe Beloin; Simonetta Gribaldo et al.
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A compendium of viruses from methanogenic archaea reveals their diversity and adaptations to the gut environment

Nature Microbiology
2023-09-25 | Journal article
DOI: 10.1038/s41564-023-01485-w
Contributors: Sofia Medvedeva; Guillaume Borrel; Mart Krupovic; Simonetta Gribaldo
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An ancestral dual function of OmpM as outer membrane tether and nutrient uptake channel in diderm Firmicutes

2023-08-14 | Preprint
DOI: 10.1101/2023.08.14.552755
Contributors: Augustinas Silale; Yiling Zhu; Jerzy Witwinowski; Robert E. Smith; Kahlan E. Newman; Satya P. Bhamidimarri; Arnaud Baslé; Syma Khalid; Christophe Beloin; Simonetta Gribaldo et al.
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Two-million-year-old microbial communities from the Kap København Formation in North Greenland

2023-06-10 | Preprint
DOI: 10.1101/2023.06.10.544454
Contributors: Antonio Fernandez-Guerra; Lars Wörmer; Guillaume Borrel; Tom O Delmont; Bo Elberling; Marcus Elvert; A. Murat Eren; Simonetta Gribaldo; Rasmus Amund Henriksen; Kai-Uwe Hinrichs et al.
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A global virome of methanogenic archaea highlights novel diversity and adaptations to the gut environment

2023-02-09 | Preprint
DOI: 10.21203/rs.3.rs-2539466/v1
Contributors: Sofia Medvedeva; Guillaume Borrel; Mart Krupovic; Simonetta Gribaldo
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Publisher Correction: Ancient origin and constrained evolution of the division and cell wall gene cluster in Bacteria

Nature Microbiology
2023-01-04 | Journal article
DOI: 10.1038/s41564-022-01312-8
Contributors: Daniela Megrian; Najwa Taib; Alexander L. Jaffe; Jillian F. Banfield; Simonetta Gribaldo
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Ancient origin and constrained evolution of the division and cell wall gene cluster in Bacteria

Nature Microbiology
2022-11-21 | Journal article
DOI: 10.1038/s41564-022-01257-y
Contributors: Daniela Megrian; Najwa Taib; Alexander L. Jaffe; Jillian F. Banfield; Simonetta Gribaldo
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An early origin of iron–sulfur cluster biosynthesis machineries before Earth oxygenation

Nature Ecology & Evolution
2022-09-15 | Journal article
DOI: 10.1038/s41559-022-01857-1
Contributors: Pierre Simon Garcia; Francesca D’Angelo; Sandrine Ollagnier de Choudens; Macha Dussouchaud; Emmanuelle Bouveret; Simonetta Gribaldo; Frédéric Barras
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Localization and functional characterization of the alternative oxidase in Naegleria

Journal of Eukaryotic Microbiology
2022-07 | Journal article
DOI: 10.1111/jeu.12908
Contributors: Diego Cantoni; Ashley Osborne; Najwa Taib; Gary Thompson; Rubén Martín‐Escolano; Eleanna Kazana; Elizabeth Edrich; Ian R. Brown; Simonetta Gribaldo; Campbell W. Gourlay et al.
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An ancient divide in outer membrane tethering systems in bacteria suggests a mechanism for the diderm-to-monoderm transition

Nature Microbiology
2022-03-04 | Journal article
DOI: 10.1038/s41564-022-01066-3
Contributors: Jerzy Witwinowski; Anna Sartori-Rupp; Najwa Taib; Nika Pende; To Nam Tham; Daniel Poppleton; Jean-Marc Ghigo; Christophe Beloin; Simonetta Gribaldo
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Publisher Correction: A catalogue of 1,167 genomes from the human gut archaeome

Nature Microbiology
2022-01-10 | Journal article
DOI: 10.1038/s41564-022-01061-8
Contributors: Cynthia Maria Chibani; Alexander Mahnert; Guillaume Borrel; Alexandre Almeida; Almut Werner; Jean-François Brugère; Simonetta Gribaldo; Robert D. Finn; Ruth A. Schmitz; Christine Moissl-Eichinger
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A catalogue of 1,167 genomes from the human gut archaeome

Nature Microbiology
2021-12-30 | Journal article
DOI: 10.1038/s41564-021-01020-9
Contributors: Cynthia Maria Chibani; Alexander Mahnert; Guillaume Borrel; Alexandre Almeida; Almut Werner; Jean-François Brugère; Simonetta Gribaldo; Robert D. Finn; Ruth A. Schmitz; Christine Moissl-Eichinger
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Comparative genomic analysis of Methanimicrococcus blatticola provides insights into host adaptation in archaea and the evolution of methanogenesis

ISME Communications
2021-12-01 | Journal article
DOI: 10.1038/s43705-021-00050-y
Contributors: Courtney M Thomas; Najwa Taib; Simonetta Gribaldo; Guillaume Borrel
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Growth temperature is the principal driver of chromatinization in archaea

2021-07-08 | Other
DOI: 10.1101/2021.07.08.451601
Contributors: Antoine Hocher; Guillaume Borrel; Khaled Fadhlaoui; Jean-François Brugère; Simonetta Gribaldo; Tobias Warnecke
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An ancient divide in outer membrane tethering systems in Bacteria

2021-05-31 | Other
DOI: 10.1101/2021.05.31.446380
Contributors: Jerzy Witwinowski; Anna Sartori-Rupp; Najwa Taib; Nika Pende; To Nam Tham; Daniel Poppleton; Jean-Marc Ghigo; Christophe Beloin; Simonetta Gribaldo
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A third purine biosynthetic pathway encoded by aminoadenine-based viral DNA genomes

Science
2021-04-30 | Journal article
DOI: 10.1126/science.abe6494
Contributors: Dona Sleiman; Pierre Simon Garcia; Marion Lagune; Jerome Loc’h; Ahmed Haouz; Najwa Taib; Pascal Röthlisberger; Simonetta Gribaldo; Philippe Marlière; Pierre Alexandre Kaminski
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Histone variants in archaea and the evolution of combinatorial chromatin complexity

Proceedings of the National Academy of Sciences
2020-12-29 | Journal article
DOI: 10.1073/pnas.2007056117
Contributors: Kathryn M. Stevens; Jacob B. Swadling; Antoine Hocher; Corinna Bang; Simonetta Gribaldo; Ruth A. Schmitz; Tobias Warnecke
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A dynamic, ring-forming MucB / RseB-like protein influences spore shape in Bacillus subtilis

PLOS Genetics
2020-12-14 | Journal article
DOI: 10.1371/journal.pgen.1009246
Contributors: Johana Luhur; Daniel B. Kearns; Helena Chan; Benson Kachappilly; Ahmed Mohamed; Cécile Morlot; Milena Awad; Dena Lyras; Najwa Taib; Simonetta Gribaldo et al.
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The host-associated archaeome

Nature Reviews Microbiology
2020-11-20 | Journal article
DOI: 10.1038/s41579-020-0407-y
Contributors: Guillaume Borrel; Jean-François Brugère; Simonetta Gribaldo; Ruth A. Schmitz; Christine Moissl-Eichinger
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Author Correction: Roadmap for naming uncultivated Archaea and Bacteria

Nature Microbiology
2020-11-12 | Journal article
DOI: 10.1038/s41564-020-00827-2
Contributors: Alison E. Murray; John Freudenstein; Simonetta Gribaldo; Roland Hatzenpichler; Philip Hugenholtz; Peter Kämpfer; Konstantinos T. Konstantinidis; Christopher E. Lane; R. Thane Papke; Donovan H. Parks et al.
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Genome-wide analysis of the Firmicutes illuminates the diderm/monoderm transition

Nature Ecology & Evolution
2020-10-19 | Journal article
DOI: 10.1038/s41559-020-01299-7
Contributors: Najwa Taib; Daniela Megrian; Jerzy Witwinowski; Panagiotis Adam; Daniel Poppleton; Guillaume Borrel; Christophe Beloin; Simonetta Gribaldo
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SepF is the FtsZ-anchor in Archaea: implications for cell division in the Last Universal Common Ancestor

2020-10-06 | Preprint
DOI: 10.1101/2020.10.06.328377
Contributors: Nika Pende; Adrià Sogues; Daniela Megrian; Hayk Palabikyan; Anna Sartori-Rupp; Martín Graña; Simon K.-M. R. Rittmann; Anne Marie Wehenkel; Pedro M. Alzari; Simonetta Gribaldo
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Roadmap for naming uncultivated Archaea and Bacteria

Nature Microbiology
2020-06-08 | Journal article
DOI: 10.1038/s41564-020-0733-x
Contributors: Alison E. Murray; John Freudenstein; Simonetta Gribaldo; Roland Hatzenpichler; Philip Hugenholtz; Peter Kämpfer; Konstantinos T. Konstantinidis; Christopher E. Lane; R. Thane Papke; Donovan H. Parks et al.
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Autotransporters drive biofilm formation and auto-aggregation in the diderm FirmicuteVeillonella parvula

2020-04-16 | Preprint
DOI: 10.1101/2020.04.15.042101
Contributors: Nathalie Béchon; Alicia Jiménez-Fernández; Jerzy Witwinowski; Emilie Bierque; Najwa Taib; Thomas Cokelaer; Laurence Ma; Jean-Marc Ghigo; Simonetta Gribaldo; Christophe Beloin
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One or two membranes? Diderm Firmicutes challenge the Gram‐positive/Gram‐negative divide

Molecular Microbiology
2020-03 | Journal article
DOI: 10.1111/mmi.14469
Contributors: Daniela Megrian; Najwa Taib; Jerzy Witwinowski; Christophe Beloin; Simonetta Gribaldo
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Evolutionary relationships between Archaea and eukaryotes

Nature Ecology & Evolution
2019-12-13 | Journal article
DOI: 10.1038/s41559-019-1073-1
Contributors: Simonetta Gribaldo; Céline Brochier-Armanet
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An archaeal origin of the Wood–Ljungdahl H4MPT branch and the emergence of bacterial methylotrophy

Nature Microbiology
2019-08-26 | Journal article
DOI: 10.1038/s41564-019-0534-2
Contributors: Panagiotis S. Adam; Guillaume Borrel; Simonetta Gribaldo
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Phylogenomic analysis supports the ancestral presence of LPS-outer membranes in the Firmicutes

eLife
2016-08-31 | Journal article
DOI: 10.7554/eLife.14589
Contributors: Luisa CS Antunes; Daniel Poppleton; Andreas Klingl; Alexis Criscuolo; Bruno Dupuy; Céline Brochier-Armanet; Christophe Beloin; Simonetta Gribaldo
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Peer review (18 reviews for 7 publications/grants)

Review activity for Cell. (1)
Review activity for Current biology. (1)
Review activity for Nature (7)
Review activity for Nature communications (2)
Review activity for Nature ecology & evolution. (4)
Review activity for Nature microbiology. (2)
Review activity for PLOS genetics. (1)
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